And deleted some files from autotool-chain.

AMDiS/autogen.sh

-#!/bin/sh
-
-echo "--> Running aclocal"
-aclocal
-if test "$?" != "0" ; then
-    echo "*** aclocal failed"
-    exit 1
-fi
-
-if test "`grep AC_CONFIG_HEADER configure.ac`" != "" -o \
-        "`grep AM_CONFIG_HEADER configure.ac`" != "" ; then
-    # if we use CONFIG_HEADER, then make sure to run autoheader
-    echo "--> Running autoheader"
-    autoheader
-    if test "$?" != "0" ; then
-        echo "*** autoheader failed"
-        exit 1
-    fi
-else
-    echo "--> autoheader not needed"
-fi
-
-echo "--> Running autoconf"
-autoconf
-if test "$?" != "0" ; then
-    echo "*** autoconf failed"
-    exit 1
-fi
-
-echo "--> Running libtoolize"
-libtoolize --automake --copy
-if test "$?" != "0" ; then
-    echo "*** libtoolize failed"
-    exit 1
-fi
-
-echo "--> Running automake"
-automake -a --copy --include-deps
-if test "$?" != "0" ; then
-    echo "*** automake failed"
-    exit 1
-fi
-
-echo;
-echo "Running ./configure $@"
-echo;
-./configure $@

AMDiS/depcomp

-#! /bin/sh
-# depcomp - compile a program generating dependencies as side-effects
-
-scriptversion=2005-07-09.11
-
-# Copyright (C) 1999, 2000, 2003, 2004, 2005 Free Software Foundation, Inc.
-
-# This program is free software; you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation; either version 2, or (at your option)
-# any later version.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-
-# You should have received a copy of the GNU General Public License
-# along with this program; if not, write to the Free Software
-# Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA
-# 02110-1301, USA.
-
-# As a special exception to the GNU General Public License, if you
-# distribute this file as part of a program that contains a
-# configuration script generated by Autoconf, you may include it under
-# the same distribution terms that you use for the rest of that program.
-
-# Originally written by Alexandre Oliva <oliva@dcc.unicamp.br>.
-
-case $1 in
-  '')
-     echo "$0: No command.  Try \`$0 --help' for more information." 1>&2
-     exit 1;
-     ;;
-  -h | --h*)
-    cat <<\EOF
-Usage: depcomp [--help] [--version] PROGRAM [ARGS]
-
-Run PROGRAMS ARGS to compile a file, generating dependencies
-as side-effects.
-
-Environment variables:
-  depmode     Dependency tracking mode.
-  source      Source file read by `PROGRAMS ARGS'.
-  object      Object file output by `PROGRAMS ARGS'.
-  DEPDIR      directory where to store dependencies.
-  depfile     Dependency file to output.
-  tmpdepfile  Temporary file to use when outputing dependencies.
-  libtool     Whether libtool is used (yes/no).
-
-Report bugs to <bug-automake@gnu.org>.
-EOF
-    exit $?
-    ;;
-  -v | --v*)
-    echo "depcomp $scriptversion"
-    exit $?
-    ;;
-esac
-
-if test -z "$depmode" || test -z "$source" || test -z "$object"; then
-  echo "depcomp: Variables source, object and depmode must be set" 1>&2
-  exit 1
-fi
-
-# Dependencies for sub/bar.o or sub/bar.obj go into sub/.deps/bar.Po.
-depfile=${depfile-`echo "$object" |
-  sed 's|[^\\/]*$|'${DEPDIR-.deps}'/&|;s|\.\([^.]*\)$|.P\1|;s|Pobj$|Po|'`}
-tmpdepfile=${tmpdepfile-`echo "$depfile" | sed 's/\.\([^.]*\)$/.T\1/'`}
-
-rm -f "$tmpdepfile"
-
-# Some modes work just like other modes, but use different flags.  We
-# parameterize here, but still list the modes in the big case below,
-# to make depend.m4 easier to write.  Note that we *cannot* use a case
-# here, because this file can only contain one case statement.
-if test "$depmode" = hp; then
-  # HP compiler uses -M and no extra arg.
-  gccflag=-M
-  depmode=gcc
-fi
-
-if test "$depmode" = dashXmstdout; then
-   # This is just like dashmstdout with a different argument.
-   dashmflag=-xM
-   depmode=dashmstdout
-fi
-
-case "$depmode" in
-gcc3)
-## gcc 3 implements dependency tracking that does exactly what
-## we want.  Yay!  Note: for some reason libtool 1.4 doesn't like
-## it if -MD -MP comes after the -MF stuff.  Hmm.
-  "$@" -MT "$object" -MD -MP -MF "$tmpdepfile"
-  stat=$?
-  if test $stat -eq 0; then :
-  else
-    rm -f "$tmpdepfile"
-    exit $stat
-  fi
-  mv "$tmpdepfile" "$depfile"
-  ;;
-
-gcc)
-## There are various ways to get dependency output from gcc.  Here's
-## why we pick this rather obscure method:
-## - Don't want to use -MD because we'd like the dependencies to end
-##   up in a subdir.  Having to rename by hand is ugly.
-##   (We might end up doing this anyway to support other compilers.)
-## - The DEPENDENCIES_OUTPUT environment variable makes gcc act like
-##   -MM, not -M (despite what the docs say).
-## - Using -M directly means running the compiler twice (even worse
-##   than renaming).
-  if test -z "$gccflag"; then
-    gccflag=-MD,
-  fi
-  "$@" -Wp,"$gccflag$tmpdepfile"
-  stat=$?
-  if test $stat -eq 0; then :
-  else
-    rm -f "$tmpdepfile"
-    exit $stat
-  fi
-  rm -f "$depfile"
-  echo "$object : \\" > "$depfile"
-  alpha=ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz
-## The second -e expression handles DOS-style file names with drive letters.
-  sed -e 's/^[^:]*: / /' \
-      -e 's/^['$alpha']:\/[^:]*: / /' < "$tmpdepfile" >> "$depfile"
-## This next piece of magic avoids the `deleted header file' problem.
-## The problem is that when a header file which appears in a .P file
-## is deleted, the dependency causes make to die (because there is
-## typically no way to rebuild the header).  We avoid this by adding
-## dummy dependencies for each header file.  Too bad gcc doesn't do
-## this for us directly.
-  tr ' ' '
-' < "$tmpdepfile" |
-## Some versions of gcc put a space before the `:'.  On the theory
-## that the space means something, we add a space to the output as
-## well.
-## Some versions of the HPUX 10.20 sed can't process this invocation
-## correctly.  Breaking it into two sed invocations is a workaround.
-    sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
-  rm -f "$tmpdepfile"
-  ;;
-
-hp)
-  # This case exists only to let depend.m4 do its work.  It works by
-  # looking at the text of this script.  This case will never be run,
-  # since it is checked for above.
-  exit 1
-  ;;
-
-sgi)
-  if test "$libtool" = yes; then
-    "$@" "-Wp,-MDupdate,$tmpdepfile"
-  else
-    "$@" -MDupdate "$tmpdepfile"
-  fi
-  stat=$?
-  if test $stat -eq 0; then :
-  else
-    rm -f "$tmpdepfile"
-    exit $stat
-  fi
-  rm -f "$depfile"
-
-  if test -f "$tmpdepfile"; then  # yes, the sourcefile depend on other files
-    echo "$object : \\" > "$depfile"
-
-    # Clip off the initial element (the dependent).  Don't try to be
-    # clever and replace this with sed code, as IRIX sed won't handle
-    # lines with more than a fixed number of characters (4096 in
-    # IRIX 6.2 sed, 8192 in IRIX 6.5).  We also remove comment lines;
-    # the IRIX cc adds comments like `#:fec' to the end of the
-    # dependency line.
-    tr ' ' '
-' < "$tmpdepfile" \
-    | sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' | \
-    tr '
-' ' ' >> $depfile
-    echo >> $depfile
-
-    # The second pass generates a dummy entry for each header file.
-    tr ' ' '
-' < "$tmpdepfile" \
-   | sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' -e 's/$/:/' \
-   >> $depfile
-  else
-    # The sourcefile does not contain any dependencies, so just
-    # store a dummy comment line, to avoid errors with the Makefile
-    # "include basename.Plo" scheme.
-    echo "#dummy" > "$depfile"
-  fi
-  rm -f "$tmpdepfile"
-  ;;
-
-aix)
-  # The C for AIX Compiler uses -M and outputs the dependencies
-  # in a .u file.  In older versions, this file always lives in the
-  # current directory.  Also, the AIX compiler puts `$object:' at the
-  # start of each line; $object doesn't have directory information.
-  # Version 6 uses the directory in both cases.
-  stripped=`echo "$object" | sed 's/\(.*\)\..*$/\1/'`
-  tmpdepfile="$stripped.u"
-  if test "$libtool" = yes; then
-    "$@" -Wc,-M
-  else
-    "$@" -M
-  fi
-  stat=$?
-
-  if test -f "$tmpdepfile"; then :
-  else
-    stripped=`echo "$stripped" | sed 's,^.*/,,'`
-    tmpdepfile="$stripped.u"
-  fi
-
-  if test $stat -eq 0; then :
-  else
-    rm -f "$tmpdepfile"
-    exit $stat
-  fi
-
-  if test -f "$tmpdepfile"; then
-    outname="$stripped.o"
-    # Each line is of the form `foo.o: dependent.h'.
-    # Do two passes, one to just change these to
-    # `$object: dependent.h' and one to simply `dependent.h:'.
-    sed -e "s,^$outname:,$object :," < "$tmpdepfile" > "$depfile"
-    sed -e "s,^$outname: \(.*\)$,\1:," < "$tmpdepfile" >> "$depfile"
-  else
-    # The sourcefile does not contain any dependencies, so just
-    # store a dummy comment line, to avoid errors with the Makefile
-    # "include basename.Plo" scheme.
-    echo "#dummy" > "$depfile"
-  fi
-  rm -f "$tmpdepfile"
-  ;;
-
-icc)
-  # Intel's C compiler understands `-MD -MF file'.  However on
-  #    icc -MD -MF foo.d -c -o sub/foo.o sub/foo.c
-  # ICC 7.0 will fill foo.d with something like
-  #    foo.o: sub/foo.c
-  #    foo.o: sub/foo.h
-  # which is wrong.  We want:
-  #    sub/foo.o: sub/foo.c
-  #    sub/foo.o: sub/foo.h
-  #    sub/foo.c:
-  #    sub/foo.h:
-  # ICC 7.1 will output
-  #    foo.o: sub/foo.c sub/foo.h
-  # and will wrap long lines using \ :
-  #    foo.o: sub/foo.c ... \
-  #     sub/foo.h ... \
-  #     ...
-
-  "$@" -MD -MF "$tmpdepfile"
-  stat=$?
-  if test $stat -eq 0; then :
-  else
-    rm -f "$tmpdepfile"
-    exit $stat
-  fi
-  rm -f "$depfile"
-  # Each line is of the form `foo.o: dependent.h',
-  # or `foo.o: dep1.h dep2.h \', or ` dep3.h dep4.h \'.
-  # Do two passes, one to just change these to
-  # `$object: dependent.h' and one to simply `dependent.h:'.
-  sed "s,^[^:]*:,$object :," < "$tmpdepfile" > "$depfile"
-  # Some versions of the HPUX 10.20 sed can't process this invocation
-  # correctly.  Breaking it into two sed invocations is a workaround.
-  sed 's,^[^:]*: \(.*\)$,\1,;s/^\\$//;/^$/d;/:$/d' < "$tmpdepfile" |
-    sed -e 's/$/ :/' >> "$depfile"
-  rm -f "$tmpdepfile"
-  ;;
-
-tru64)
-   # The Tru64 compiler uses -MD to generate dependencies as a side
-   # effect.  `cc -MD -o foo.o ...' puts the dependencies into `foo.o.d'.
-   # At least on Alpha/Redhat 6.1, Compaq CCC V6.2-504 seems to put
-   # dependencies in `foo.d' instead, so we check for that too.
-   # Subdirectories are respected.
-   dir=`echo "$object" | sed -e 's|/[^/]*$|/|'`
-   test "x$dir" = "x$object" && dir=
-   base=`echo "$object" | sed -e 's|^.*/||' -e 's/\.o$//' -e 's/\.lo$//'`
-
-   if test "$libtool" = yes; then
-      # With Tru64 cc, shared objects can also be used to make a
-      # static library.  This mecanism is used in libtool 1.4 series to
-      # handle both shared and static libraries in a single compilation.
-      # With libtool 1.4, dependencies were output in $dir.libs/$base.lo.d.
-      #
-      # With libtool 1.5 this exception was removed, and libtool now
-      # generates 2 separate objects for the 2 libraries.  These two
-      # compilations output dependencies in in $dir.libs/$base.o.d and
-      # in $dir$base.o.d.  We have to check for both files, because
-      # one of the two compilations can be disabled.  We should prefer
-      # $dir$base.o.d over $dir.libs/$base.o.d because the latter is
-      # automatically cleaned when .libs/ is deleted, while ignoring
-      # the former would cause a distcleancheck panic.
-      tmpdepfile1=$dir.libs/$base.lo.d   # libtool 1.4
-      tmpdepfile2=$dir$base.o.d          # libtool 1.5
-      tmpdepfile3=$dir.libs/$base.o.d    # libtool 1.5
-      tmpdepfile4=$dir.libs/$base.d      # Compaq CCC V6.2-504
-      "$@" -Wc,-MD
-   else
-      tmpdepfile1=$dir$base.o.d
-      tmpdepfile2=$dir$base.d
-      tmpdepfile3=$dir$base.d
-      tmpdepfile4=$dir$base.d
-      "$@" -MD
-   fi
-
-   stat=$?
-   if test $stat -eq 0; then :
-   else
-      rm -f "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3" "$tmpdepfile4"
-      exit $stat
-   fi
-
-   for tmpdepfile in "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3" "$tmpdepfile4"
-   do
-     test -f "$tmpdepfile" && break
-   done
-   if test -f "$tmpdepfile"; then
-      sed -e "s,^.*\.[a-z]*:,$object:," < "$tmpdepfile" > "$depfile"
-      # That's a tab and a space in the [].
-      sed -e 's,^.*\.[a-z]*:[	 ]*,,' -e 's,$,:,' < "$tmpdepfile" >> "$depfile"
-   else
-      echo "#dummy" > "$depfile"
-   fi
-   rm -f "$tmpdepfile"
-   ;;
-
-#nosideeffect)
-  # This comment above is used by automake to tell side-effect
-  # dependency tracking mechanisms from slower ones.
-
-dashmstdout)
-  # Important note: in order to support this mode, a compiler *must*
-  # always write the preprocessed file to stdout, regardless of -o.
-  "$@" || exit $?
-
-  # Remove the call to Libtool.
-  if test "$libtool" = yes; then
-    while test $1 != '--mode=compile'; do
-      shift
-    done
-    shift
-  fi
-
-  # Remove `-o $object'.
-  IFS=" "
-  for arg
-  do
-    case $arg in
-    -o)
-      shift
-      ;;
-    $object)
-      shift
-      ;;
-    *)
-      set fnord "$@" "$arg"
-      shift # fnord
-      shift # $arg
-      ;;
-    esac
-  done
-
-  test -z "$dashmflag" && dashmflag=-M
-  # Require at least two characters before searching for `:'
-  # in the target name.  This is to cope with DOS-style filenames:
-  # a dependency such as `c:/foo/bar' could be seen as target `c' otherwise.
-  "$@" $dashmflag |
-    sed 's:^[  ]*[^: ][^:][^:]*\:[    ]*:'"$object"'\: :' > "$tmpdepfile"
-  rm -f "$depfile"
-  cat < "$tmpdepfile" > "$depfile"
-  tr ' ' '
-' < "$tmpdepfile" | \
-## Some versions of the HPUX 10.20 sed can't process this invocation
-## correctly.  Breaking it into two sed invocations is a workaround.
-    sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
-  rm -f "$tmpdepfile"
-  ;;
-
-dashXmstdout)
-  # This case only exists to satisfy depend.m4.  It is never actually
-  # run, as this mode is specially recognized in the preamble.
-  exit 1
-  ;;
-
-makedepend)
-  "$@" || exit $?
-  # Remove any Libtool call
-  if test "$libtool" = yes; then
-    while test $1 != '--mode=compile'; do
-      shift
-    done
-    shift
-  fi
-  # X makedepend
-  shift
-  cleared=no
-  for arg in "$@"; do
-    case $cleared in
-    no)
-      set ""; shift
-      cleared=yes ;;
-    esac
-    case "$arg" in
-    -D*|-I*)
-      set fnord "$@" "$arg"; shift ;;
-    # Strip any option that makedepend may not understand.  Remove
-    # the object too, otherwise makedepend will parse it as a source file.
-    -*|$object)
-      ;;
-    *)
-      set fnord "$@" "$arg"; shift ;;
-    esac
-  done
-  obj_suffix="`echo $object | sed 's/^.*\././'`"
-  touch "$tmpdepfile"
-  ${MAKEDEPEND-makedepend} -o"$obj_suffix" -f"$tmpdepfile" "$@"
-  rm -f "$depfile"
-  cat < "$tmpdepfile" > "$depfile"
-  sed '1,2d' "$tmpdepfile" | tr ' ' '
-' | \
-## Some versions of the HPUX 10.20 sed can't process this invocation
-## correctly.  Breaking it into two sed invocations is a workaround.
-    sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
-  rm -f "$tmpdepfile" "$tmpdepfile".bak
-  ;;
-
-cpp)
-  # Important note: in order to support this mode, a compiler *must*
-  # always write the preprocessed file to stdout.
-  "$@" || exit $?
-
-  # Remove the call to Libtool.
-  if test "$libtool" = yes; then
-    while test $1 != '--mode=compile'; do
-      shift
-    done
-    shift
-  fi
-
-  # Remove `-o $object'.
-  IFS=" "
-  for arg
-  do
-    case $arg in
-    -o)
-      shift
-      ;;
-    $object)
-      shift
-      ;;
-    *)
-      set fnord "$@" "$arg"
-      shift # fnord
-      shift # $arg
-      ;;
-    esac
-  done
-
-  "$@" -E |
-    sed -n -e '/^# [0-9][0-9]* "\([^"]*\)".*/ s:: \1 \\:p' \
-       -e '/^#line [0-9][0-9]* "\([^"]*\)".*/ s:: \1 \\:p' |
-    sed '$ s: \\$::' > "$tmpdepfile"
-  rm -f "$depfile"
-  echo "$object : \\" > "$depfile"
-  cat < "$tmpdepfile" >> "$depfile"
-  sed < "$tmpdepfile" '/^$/d;s/^ //;s/ \\$//;s/$/ :/' >> "$depfile"
-  rm -f "$tmpdepfile"
-  ;;
-
-msvisualcpp)
-  # Important note: in order to support this mode, a compiler *must*
-  # always write the preprocessed file to stdout, regardless of -o,
-  # because we must use -o when running libtool.
-  "$@" || exit $?
-  IFS=" "
-  for arg
-  do
-    case "$arg" in
-    "-Gm"|"/Gm"|"-Gi"|"/Gi"|"-ZI"|"/ZI")
-	set fnord "$@"
-	shift
-	shift
-	;;
-    *)
-	set fnord "$@" "$arg"
-	shift
-	shift
-	;;
-    esac
-  done
-  "$@" -E |
-  sed -n '/^#line [0-9][0-9]* "\([^"]*\)"/ s::echo "`cygpath -u \\"\1\\"`":p' | sort | uniq > "$tmpdepfile"
-  rm -f "$depfile"
-  echo "$object : \\" > "$depfile"
-  . "$tmpdepfile" | sed 's% %\\ %g' | sed -n '/^\(.*\)$/ s::	\1 \\:p' >> "$depfile"
-  echo "	" >> "$depfile"
-  . "$tmpdepfile" | sed 's% %\\ %g' | sed -n '/^\(.*\)$/ s::\1\::p' >> "$depfile"
-  rm -f "$tmpdepfile"
-  ;;
-
-none)
-  exec "$@"
-  ;;
-
-*)
-  echo "Unknown depmode $depmode" 1>&2
-  exit 1
-  ;;
-esac
-
-exit 0
-
-# Local Variables:
-# mode: shell-script
-# sh-indentation: 2
-# eval: (add-hook 'write-file-hooks 'time-stamp)
-# time-stamp-start: "scriptversion="
-# time-stamp-format: "%:y-%02m-%02d.%02H"
-# time-stamp-end: "$"
-# End:

AMDiS/getamdis_cmake.sh

-if test -e ./AMDiS ; then
-  echo "there is already an AMDiS directory. I will abort. "
-  exit 1
-fi
-
-ERROR=""
-DOWNLOAD="OK"
-svn --username studentiwr co https://gforge.zih.tu-dresden.de/svn/amdis/trunk amdis
-if test $? -ne 0 ; then
-  DOWNLOAD="NOT OK"
-  ERROR="DOWNLOAD"
-fi
-if test "$1" ; then
-  prefix="$1"
-else
-  prefix=$(pwd)/amdis_installed
-fi
-echo "prefix: ${prefix}"
-if test ! -d ${prefix} ; then
-  mkdir --parents ${prefix}
-fi
-if test ! -d amdis_build ; then
-  mkdir amdis_build
-fi
-cd amdis_build
-CONFIGURING="OK"
-cmake -DCMAKE_INSTALL_PREFIX=${prefix} ../AMDiS 
-if test $? -ne 0; then
-  CONFIGURING="NOT OK"
-  ERROR="${ERROR} CONFIGURE"
-fi
-COMPILE="OK"
-make
-if test $? -ne 0; then
-  COMPILE="NOT OK"
-  ERROR="${ERROR} COMPILE"
-fi
-INSTALLING="OK"
-make install
-if test $? -ne 0; then
-  INSTALLING="NOT OK"
-  ERROR="${ERROR} INSTALL"
-fi
-if test -z "${ERROR}"; then
-  echo "amdis was successfully downloaded, configured and installed to ${prefix}"
-  echo "you can use this installation in cmake with the AMDIS_DIR ${prefix}/share/amdis"
-else
-  echo "something went wrong: "
-  echo "download:  ${DOWNLOAD}"