CMakeLists.txt

project(AMDiS)

cmake_minimum_required(VERSION 2.6)

#needs: --enable-debug, enable-intel --enable-openmp --enable-parmetis --enable-parallel-domain --enable-umfpack --enable-mkl --enable-boost --enable-marmot

#TODO: use the cmake build type
option(ENABLE_DEBUG "debug" false)
#option(ENABLE_INTEL "use intel compiler" false)
option(ENABLE_OPENMP "use openmp" false)
option(ENABLE_PARMETIS "use partion of unity and enable parmetis" false)
option(ENABLE_PARALLEL_DOMAIN "use parallel domain decomposition" false)
SET(PETSC_DIR "" CACHE STRING "Petsc directory for parallel domain decomposition" )
SET(PETSC_ARCH "" CACHE STRING "Petsc architecture")
option(ENABLE_UMFPACK "use umfpack solver" false)
option(ENABLE_MKL "use the mkl" false)
SET(MKL_DIR "" CACHE STRING "MKL directory")
option(ENABLE_DUNE "use dune" false)
SET(DUNE_DIR "" CACHE STRING "Dune directory")
#option(ENABLE_BOOST "use the boost library" false)
option(ENABLE_MARMOT "use marmot" false)
option(ENABLE_GUI "compile the gui" false)
#option(ENABLE_TESTS "compile the tests" false)
SET(ENABLE_TESTS false)

if(ENABLE_INTEL)
	Message("please set the icc manually")
	INCLUDE (CMakeForceCompiler)
	CMAKE_FORCE_C_COMPILER(icc "intel C compiler")
	CMAKE_FORCE_CXX_COMPILER(icpc "intel C++ compiler")
	#SET(CMAKE_C_COMPILER "icc")
endif(ENABLE_INTEL)

#if(ENABLE_BOOST)
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_BOOST=1")
	find_package(Boost 1.42 REQUIRED)
#endif(ENABLE_BOOST)

SET(LIB_DIR ./lib)
SET(SOURCE_DIR ./src)
SET(AMDIS_SRC ${SOURCE_DIR}/DOFIndexed.cc 
	      ${SOURCE_DIR}/GNUPlotWriter.cc 
	      ${SOURCE_DIR}/VertexVector.cc 
	      ${SOURCE_DIR}/PeriodicBC.cc 
	      ${SOURCE_DIR}/Recovery.cc 
	      ${SOURCE_DIR}/RecoveryEstimator.cc 
	      ${SOURCE_DIR}/ResidualEstimator.cc 
	      ${SOURCE_DIR}/Cholesky.cc 
	      ${SOURCE_DIR}/AdaptBase.cc
	      ${SOURCE_DIR}/StandardProblemIteration.cc 
	      ${SOURCE_DIR}/ProblemScal.cc 
	      ${SOURCE_DIR}/ProblemVec.cc
	      ${SOURCE_DIR}/ProblemImplicit.cc 
	      ${SOURCE_DIR}/ProblemVecDbg.cc 
	      ${SOURCE_DIR}/DualTraverse.cc 
	      ${SOURCE_DIR}/ElementData.cc 
	      ${SOURCE_DIR}/ComponentTraverseInfo.cc 
	      ${SOURCE_DIR}/CreatorMap.cc 
	      ${SOURCE_DIR}/ProblemInterpolScal.cc 
	      ${SOURCE_DIR}/ProblemInterpolVec.cc 
	      ${SOURCE_DIR}/MacroReader.cc 
	      ${SOURCE_DIR}/ValueReader.cc 
	      ${SOURCE_DIR}/Projection.cc 
	      ${SOURCE_DIR}/SubAssembler.cc 
	      ${SOURCE_DIR}/ZeroOrderAssembler.cc 
	      ${SOURCE_DIR}/FirstOrderAssembler.cc 
	      ${SOURCE_DIR}/SecondOrderAssembler.cc 
	      ${SOURCE_DIR}/Assembler.cc 
	      ${SOURCE_DIR}/AdaptInfo.cc 
	      ${SOURCE_DIR}/Marker.cc 
	      ${SOURCE_DIR}/SurfaceQuadrature.cc 
	      ${SOURCE_DIR}/LeafData.cc 
	      ${SOURCE_DIR}/BoundaryManager.cc 
	      ${SOURCE_DIR}/DirichletBC.cc 
	      ${SOURCE_DIR}/RobinBC.cc  
	      ${SOURCE_DIR}/FileWriter.cc 
	      ${SOURCE_DIR}/ElementFileWriter.cc 
	      ${SOURCE_DIR}/ElInfo.cc 
	      ${SOURCE_DIR}/ElInfoStack.cc 
	      ${SOURCE_DIR}/OperatorTerm.cc 
              ${SOURCE_DIR}/ZeroOrderTerm.cc 
	      ${SOURCE_DIR}/FirstOrderTerm.cc 
	      ${SOURCE_DIR}/SecondOrderTerm.cc 
              ${SOURCE_DIR}/Operator.cc 
	      ${SOURCE_DIR}/Mesh.cc 
	      ${SOURCE_DIR}/MeshStructure.cc 
	      ${SOURCE_DIR}/AdaptStationary.cc  
	      ${SOURCE_DIR}/AdaptInstationary.cc
	      ${SOURCE_DIR}/DOFVector.cc 
	      ${SOURCE_DIR}/Estimator.cc 
	      ${SOURCE_DIR}/ProblemInstat.cc 
	      ${SOURCE_DIR}/ProblemNonLin.cc 
	      ${SOURCE_DIR}/NonLinUpdater.cc 
	      ${SOURCE_DIR}/QPsiPhi.cc 
	      ${SOURCE_DIR}/BasisFunction.cc 
	      ${SOURCE_DIR}/Boundary.cc 
	      ${SOURCE_DIR}/CoarseningManager.cc 
	      ${SOURCE_DIR}/CoarseningManager1d.cc 
	      ${SOURCE_DIR}/CoarseningManager2d.cc 
	      ${SOURCE_DIR}/CoarseningManager3d.cc 
	      ${SOURCE_DIR}/DOFAdmin.cc 
	      ${SOURCE_DIR}/DOFMatrix.cc 
	      ${SOURCE_DIR}/Element.cc 
	      ${SOURCE_DIR}/ElInfo1d.cc 
	      ${SOURCE_DIR}/ElInfo2d.cc 
	      ${SOURCE_DIR}/ElInfo3d.cc 
	      ${SOURCE_DIR}/FiniteElemSpace.cc 
	      ${SOURCE_DIR}/FixVec.cc 
	      ${SOURCE_DIR}/Global.cc 
	      ${SOURCE_DIR}/Lagrange.cc 
	      ${SOURCE_DIR}/Line.cc 
	      ${SOURCE_DIR}/MacroElement.cc 
	      ${SOURCE_DIR}/MacroWriter.cc 
	      ${SOURCE_DIR}/Parameters.cc 
	      ${SOURCE_DIR}/Parametric.cc 
	      ${SOURCE_DIR}/Quadrature.cc 
	      ${SOURCE_DIR}/RCNeighbourList.cc 
	      ${SOURCE_DIR}/RefinementManager.cc 
	      ${SOURCE_DIR}/RefinementManager1d.cc 
	      ${SOURCE_DIR}/RefinementManager2d.cc 
	      ${SOURCE_DIR}/RefinementManager3d.cc 
	      ${SOURCE_DIR}/Tetrahedron.cc 
	      ${SOURCE_DIR}/Traverse.cc 
	      ${SOURCE_DIR}/TraverseParallel.cc 
	      ${SOURCE_DIR}/Triangle.cc 
	      ${SOURCE_DIR}/TecPlotWriter.cc 
	      ${SOURCE_DIR}/ValueWriter.cc 
	      ${SOURCE_DIR}/VtkWriter.cc 
	      ${SOURCE_DIR}/PngWriter.cc 
	      ${SOURCE_DIR}/PovrayWriter.cc 
	      ${SOURCE_DIR}/DataCollector.cc 
	      ${SOURCE_DIR}/ScalableQuadrature.cc 
	      ${SOURCE_DIR}/SubElInfo.cc 
	      ${SOURCE_DIR}/parallel/InteriorBoundary.cc 
	      ${SOURCE_DIR}/ElementDofIterator.cc 
	      ${SOURCE_DIR}/Debug.cc
              ${SOURCE_DIR}/time/RosenbrockAdaptInstationary.cc 
	      ${SOURCE_DIR}/time/RosenbrockStationary.cc 
	      ${SOURCE_DIR}/time/RosenbrockMethod.cc
	      )

if(ENABLE_PARMETIS)
	find_package(MPI REQUIRED)
	INCLUDE (CMakeForceCompiler)	
	CMAKE_FORCE_C_COMPILER(mpicc "MPI C compiler")
	CMAKE_FORCE_CXX_COMPILER(mpiCC "MPI C++ compiler")

	include_directories( ${LIB_DIR}/ParMetis-3.1)
	SET(PARALLEL_AMDIS_SRC  ${SOURCE_DIR}/ConditionalEstimator.cc ${SOURCE_DIR}/ConditionalMarker.cc 
				${SOURCE_DIR}/ParallelProblem.cc ${SOURCE_DIR}/ParMetisPartitioner.cc 
				${SOURCE_DIR}/PollutionError.cc)
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_PARALLEL_AMDIS=1")
endif(ENABLE_PARMETIS)

if(ENABLE_PARALLEL_DOMAIN)
	include_directories(${PETSC_DIR}/include ${PETSC_DIR}/${PETSC_ARCH}/include)
	SET(PARALLEL_DOMAIN_AMDIS_SRC
		${SOURCE_DIR}/parallel/MeshDistributor.cc 
		${SOURCE_DIR}/parallel/StdMpi.cc
		${SOURCE_DIR}/parallel/ParallelDebug.cc
		${SOURCE_DIR}/parallel/GlobalMatrixSolver.cc
		${SOURCE_DIR}/parallel/MpiHelper.cc
		${SOURCE_DIR}/parallel/ElementObjectData.cc)
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_PARALLEL_DOMAIN_AMDIS=1")
endif(ENABLE_PARALLEL_DOMAIN)

if(ENABLE_DEBUG)
	SET(COMPILEFLAGS "${COMPILEFLAGS} -g -O0 -DDEBUG=1")
endif(ENABLE_DEBUG)

if(ENABLE_OPENMP)
	if(ENABLE_INTEL)
		SET(COMPILEFLAGS "${COMPILEFLAGS} -openmp")
	else(ENABLE_INTEL)
		SET(COMPILEFLAGS "${COMPILEFLAGS} -fopenmp")
	endif(ENABLE_INTEL)
endif(ENABLE_OPENMP)

if(ENABLE_UMFPACK)
	include_directories(${LIB_DIR}/UFconfig ${LIB_DIR}/AMD/Include ${LIB_DIR}/UMFPACK/Include)
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_UMFPACK=1 -DMTL_HAS_UMFPACK")
endif(ENABLE_UMFPACK)

if(ENABLE_MKL)
	include_directories(${MKL_DIR})
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_MKL=1")
endif(ENABLE_MKL)

if(ENABLE_DUNE)
	include_directories(${DUNE_DIR})
	SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_DUNE=1")
endif(ENABLE_DUNE)

SET(COMPOSITE_SOURCE_DIR compositeFEM/src)
SET(COMPOSITE_FEM_SRC ${COMPOSITE_SOURCE_DIR}/CFE_Integration.cc ${COMPOSITE_SOURCE_DIR}/CFE_NormAndErrorFcts.cc 
		      ${COMPOSITE_SOURCE_DIR}/CompositeFEMMethods.cc ${COMPOSITE_SOURCE_DIR}/LevelSetAdaptMesh.cc 
		      ${COMPOSITE_SOURCE_DIR}/PenaltyOperator.cc ${COMPOSITE_SOURCE_DIR}/ElementLevelSet.cc 
		      ${COMPOSITE_SOURCE_DIR}/CompositeFEMOperator.cc ${COMPOSITE_SOURCE_DIR}/SubPolytope.cc 
		      ${COMPOSITE_SOURCE_DIR}/SubElementAssembler.cc )

#mtl4 includes
include_directories(${LIB_DIR}/mtl4)
include_directories(${SOURCE_DIR})

add_library(amdis SHARED ${AMDIS_SRC} ${PARALLEL_AMDIS_SRC} ${PARALLEL_DOMAIN_AMDIS_SRC})
add_library(compositeFEM SHARED ${COMPOSITE_FEM_SRC})


SET_TARGET_PROPERTIES(amdis PROPERTIES COMPILE_FLAGS "${COMPILEFLAGS}")
if(ENABLE_MARMOT)
	Message("please set marmotcc manually")
endif(ENABLE_MARMOT)

install(TARGETS amdis compositeFEM 
	LIBRARY DESTINATION lib )

if(ENABLE_GUI)
	add_subdirectory(other/tools/amdis_gui)
endif(ENABLE_GUI)

if(ENABLE_TESTS)
#ENABLE_TESTING()
#add_test(demo_test run_test.sh)

#add_test(demo_test ${CMAKE_CTEST_COMMAND} --build-and-test "${CMAKE_SOURCE_DIR}/test/demo_test" "${CMAKE_BINARY_DIR}/test/demo_test" --build-generator "${CMAKE_GENERATOR}" --build-makeprogram "${CMAKE_MAKE_PROGRAM}" "${CMAKE_BINARY_DIR}/test/demo_test")
endif(ENABLE_TESTS)