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Praetorius, Simon
committed
cmake_minimum_required(VERSION 2.6)
SET(LIB_DIR ${AMDIS_SOURCE_DIR}/lib)
SET(SOURCE_DIR ${AMDIS_SOURCE_DIR}/src)
#TODO: use the cmake build type
SET(MTL_INCLUDE_DIR ${LIB_DIR}/mtl4/ CACHE PATH "mtl4 directory")
set(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} -DDEBUG=0") #-Wno-unused-but-set-variable
set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -DDEBUG=1 -O0") #-Wno-unused-but-set-variable
if(NOT CurrentRevision)
find_package(Subversion)
if(Subversion_FOUND)
Subversion_WC_INFO(${CMAKE_CURRENT_SOURCE_DIR} svn_info)
#message("svn-rev: ${svn_info_WC_REVISION}")
set(CurrentRevision "0.9.${svn_info_WC_REVISION}")
endif()
endif()
if(NOT AMDIS_MAJOR)
set(AMDIS_MAJOR "0")
endif()
if(NOT AMDIS_MINOR)
set(AMDIS_MINOR "9")
endif()
set(COMPILEFLAGS "-DAMDIS_VERSION=${CurrentRevision}")

Naumann, Andreas
committed
#define the build type, empty can be everything and nothing
if(CMAKE_BUILD_TYPE STREQUAL "")
set(CMAKE_BUILD_TYPE "Release")
endif()

Thomas Witkowski
committed
if(CMAKE_CXX_COMPILER MATCHES ".*icpc")
Message("Compiler: Intel")
set(CMAKE_CXX_FLAGS "-diag-disable 654 -diag-disable 858")
endif()
SET(ENABLE_PARALLEL_DOMAIN "OFF" CACHE STRING "use parallel domain decomposition. please set to one of: PMTL, PETSC, OFF" )
option(USE_PETSC_DEV false)
option(ENABLE_ZOLTAN false)

Thomas Witkowski
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option(ENABLE_UMFPACK "Use of UMFPACK solver" false)
option(ENABLE_PNG "use png reader/writer" false)
option(ENABLE_BDDCML "Use of BDDCML library" false)

Naumann, Andreas
committed
find_package(Boost 1.42 REQUIRED)
if(Boost_FOUND)
list(APPEND AMDIS_INCLUDE_DIRS ${Boost_INCLUDE_DIR})

Naumann, Andreas
committed
message("boost lib-dirs: ${Boost_LIBRARY_DIRS}")
message("use the boost dir: ${Boost_INCLUDE_DIR}")
if(WIN32)
message("the windows find_boost does not set the boost library paths, please set it")
SET(Boost_LIBRARY_DIRS CACHE PATH "The directory containing the boost libraries")
list(APPEND AMDIS_LINK_DIRS ${Boost_LIBRARY_DIRS})

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committed
endif(Boost_FOUND)
SET(AMDIS_SRC ${SOURCE_DIR}/AdaptBase.cc
${SOURCE_DIR}/AdaptInfo.cc
${SOURCE_DIR}/AdaptInstationary.cc

Thomas Witkowski
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${SOURCE_DIR}/AMDiS.cc
${SOURCE_DIR}/Assembler.cc
${SOURCE_DIR}/BasisFunction.cc
${SOURCE_DIR}/Boundary.cc
${SOURCE_DIR}/BoundaryManager.cc
${SOURCE_DIR}/BoundaryObject.cc
${SOURCE_DIR}/Cholesky.cc
${SOURCE_DIR}/CoarseningManager.cc
${SOURCE_DIR}/CoarseningManager1d.cc
${SOURCE_DIR}/CoarseningManager2d.cc
${SOURCE_DIR}/CoarseningManager3d.cc
${SOURCE_DIR}/ComponentTraverseInfo.cc
${SOURCE_DIR}/CreatorMap.cc
${SOURCE_DIR}/DOFAdmin.cc
${SOURCE_DIR}/DOFIndexed.cc
${SOURCE_DIR}/DOFMatrix.cc
${SOURCE_DIR}/DOFVector.cc
${SOURCE_DIR}/DirichletBC.cc
${SOURCE_DIR}/DualTraverse.cc
${SOURCE_DIR}/ElInfo.cc
${SOURCE_DIR}/ElInfo1d.cc
${SOURCE_DIR}/ElInfo2d.cc
${SOURCE_DIR}/ElInfo3d.cc
${SOURCE_DIR}/ElInfoStack.cc
${SOURCE_DIR}/Element.cc
${SOURCE_DIR}/ElementData.cc
${SOURCE_DIR}/ElementDofIterator.cc
${SOURCE_DIR}/FiniteElemSpace.cc
${SOURCE_DIR}/FirstOrderAssembler.cc
${SOURCE_DIR}/FirstOrderTerm.cc
${SOURCE_DIR}/FixVec.cc
${SOURCE_DIR}/Global.cc
${SOURCE_DIR}/GlobalDOFNumbering.cc
${SOURCE_DIR}/GlobalElementNumbering.cc
${SOURCE_DIR}/Lagrange.cc
${SOURCE_DIR}/LeafData.cc
${SOURCE_DIR}/Line.cc
${SOURCE_DIR}/MacroElement.cc
${SOURCE_DIR}/Marker.cc
${SOURCE_DIR}/Mesh.cc
${SOURCE_DIR}/MeshStructure.cc
${SOURCE_DIR}/Operator.cc
${SOURCE_DIR}/OperatorTerm.cc
${SOURCE_DIR}/Parametric.cc
${SOURCE_DIR}/PeriodicBC.cc
${SOURCE_DIR}/ProblemImplicit.cc
${SOURCE_DIR}/ProblemInstat.cc
${SOURCE_DIR}/ProblemInterpol.cc
${SOURCE_DIR}/ProblemStat.cc
${SOURCE_DIR}/ProblemStatDbg.cc
${SOURCE_DIR}/Projection.cc
${SOURCE_DIR}/QPInfo.cc
${SOURCE_DIR}/QPsiPhi.cc
${SOURCE_DIR}/Quadrature.cc
${SOURCE_DIR}/RCNeighbourList.cc
${SOURCE_DIR}/Recovery.cc
${SOURCE_DIR}/RefinementManager.cc
${SOURCE_DIR}/RefinementManager1d.cc
${SOURCE_DIR}/RefinementManager2d.cc
${SOURCE_DIR}/RefinementManager3d.cc
${SOURCE_DIR}/RobinBC.cc
${SOURCE_DIR}/ScalableQuadrature.cc
${SOURCE_DIR}/SecondOrderAssembler.cc
${SOURCE_DIR}/SecondOrderTerm.cc
${SOURCE_DIR}/Serializer.cc
${SOURCE_DIR}/SubAssembler.cc
${SOURCE_DIR}/SubElInfo.cc
${SOURCE_DIR}/SubQuadrature.cc
${SOURCE_DIR}/SurfaceQuadrature.cc
${SOURCE_DIR}/Tetrahedron.cc
${SOURCE_DIR}/Traverse.cc
${SOURCE_DIR}/Triangle.cc
${SOURCE_DIR}/VertexVector.cc
${SOURCE_DIR}/ZeroOrderAssembler.cc
${SOURCE_DIR}/ZeroOrderTerm.cc
${SOURCE_DIR}/est/Estimator.cc
${SOURCE_DIR}/est/RecoveryEstimator.cc
${SOURCE_DIR}/est/ResidualEstimator.cc
${SOURCE_DIR}/est/SimpleResidualEstimator.cc
${SOURCE_DIR}/io/ArhReader.cc
${SOURCE_DIR}/io/ArhWriter.cc
${SOURCE_DIR}/io/DofWriter.cc
${SOURCE_DIR}/io/ElementFileWriter.cc
${SOURCE_DIR}/io/FileWriter.cc
${SOURCE_DIR}/io/GNUPlotWriter.cc
${SOURCE_DIR}/io/MacroInfo.cc
${SOURCE_DIR}/io/MacroReader.cc
${SOURCE_DIR}/io/MacroWriter.cc
${SOURCE_DIR}/io/PngWriter.cc
${SOURCE_DIR}/io/PovrayWriter.cc
${SOURCE_DIR}/io/ValueReader.cc
${SOURCE_DIR}/io/ValueWriter.cc
${SOURCE_DIR}/io/VtkWriter.cc
${SOURCE_DIR}/io/VtkVectorWriter.cc
${SOURCE_DIR}/nonlin/ProblemNonLin.cc
${SOURCE_DIR}/time/RosenbrockAdaptInstationary.cc
${SOURCE_DIR}/time/RosenbrockMethod.cc

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if(ENABLE_PARALLEL_DOMAIN)
### Search for MPI compiler and get compile flags and include paths. ###
list(APPEND COMPILEFLAGS "${MPI_COMPILE_FLAGS}")
include_directories(${MPI_INCLUDE_PATH})
endif(MPI_FOUND)

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### Search for ParMetis ###
find_file(PARMETIS_HEADER_FILE "parmetis.h" PATH ENV CPATH)
if(PARMETIS_HEADER_FILE)
get_filename_component(PARMETIS_INCLUDE_PATH "${PARMETIS_HEADER_FILE}" PATH CACHE)
include_directories(${PARMETIS_INCLUDE_PATH})
else()
message(FATAL_ERROR "Could not find ParMetis header file!")
endif(PARMETIS_HEADER_FILE)
find_file(PARMETIS_LIB_FILE "libparmetis.a" PATH ENV LIBRARY_PATH)
if(PARMETIS_LIB_FILE)
get_filename_component(PARMETIS_LINK_PATH "${PARMETIS_LIB_FILE}" PATH CACHE)
link_directories(${PARMETIS_LINK_PATH})
else()
message(FATAL_ERROR "Could not find ParMetis library file!")
endif(PARMETIS_LIB_FILE)
### Search for Zoltan ###
find_file(ZOLTAN_HEADER_FILE "zoltan_cpp.h" PATH ENV CPATH)
if(ZOLTAN_HEADER_FILE)
get_filename_component(ZOLTAN_HEADER_DIR "${ZOLTAN_HEADER_FILE}" PATH CACHE)
include_directories(${ZOLTAN_HEADER_DIR})
message(FATAL_ERROR "Could not find Zoltan include file!")
endif(ZOLTAN_HEADER_FILE)
list(APPEND COMPILEFLAGS "-DHAVE_ZOLTAN")
list(APPEND COMPILEFLAGS "-DHAVE_PARALLEL_DOMAIN_AMDIS=1")
${SOURCE_DIR}/parallel/DofComm.cc
${SOURCE_DIR}/parallel/CheckerPartitioner.cc
${SOURCE_DIR}/parallel/ElementObjectDatabase.cc
${SOURCE_DIR}/parallel/InteriorBoundary.cc

Thomas Witkowski
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${SOURCE_DIR}/parallel/MeshDistributor.cc
${SOURCE_DIR}/parallel/MeshLevelData.cc
${SOURCE_DIR}/parallel/MeshManipulation.cc
${SOURCE_DIR}/parallel/MpiHelper.cc
${SOURCE_DIR}/parallel/ParallelDofMapping.cc
${SOURCE_DIR}/parallel/ParallelProblemStatBase.cc
${SOURCE_DIR}/parallel/PeriodicMap.cc
${SOURCE_DIR}/parallel/ParMetisPartitioner.cc
${SOURCE_DIR}/parallel/StdMpi.cc
${SOURCE_DIR}/parallel/ZoltanPartitioner.cc)
if(ENABLE_PARALLEL_DOMAIN STREQUAL "PETSC")
set(CMAKE_MODULE_PATH "${CMAKE_MODULE_PATH};/usr/share/cmake-2.8/Modules/;${CMAKE_SOURCE_DIR}/")
set(PETSC_EXECUTABLE_RUNS ON)
find_package(PETSc REQUIRED)
include_directories(${PETSC_DIR}/include ${PETSC_DIR}/${PETSC_ARCH}/include)
list(APPEND AMDIS_INCLUDE_DIRS ${PETSC_DIR}/include ${PETSC_DIR}/${PETSC_ARCH}/include)
list(APPEND PARALLEL_DOMAIN_AMDIS_SRC
${SOURCE_DIR}/parallel/BddcMlSolver.cc
${SOURCE_DIR}/parallel/PetscMultigridPrecon.cc
${SOURCE_DIR}/parallel/PetscProblemStat.cc
${SOURCE_DIR}/parallel/PetscSolverFeti.cc
${SOURCE_DIR}/parallel/PetscSolverGlobalMatrix.cc
${SOURCE_DIR}/parallel/PetscSolverGlobalBlockMatrix.cc
${SOURCE_DIR}/parallel/PetscSolverSchur.cc
${SOURCE_DIR}/parallel/SubDomainSolver.cc)
elseif(ENABLE_PARALLEL_DOMAIN STREQUAL "PMTL")
set(MTL_INCLUDE_DIR "")
find_package(MTL REQUIRED)
list(APPEND COMPILEFLAGS "-DMTL_HAS_MPI" "-DHAVE_PARALLEL_MTL4")
list(APPEND PARALLEL_DOMAIN_AMDIS_SRC ${SOURCE_DIR}/parallel/Mtl4Solver.cc)
list(APPEND AMDIS_LIBS ${MTL_LIBRARIES})
message(SEND_ERROR "Set the domain-decomposition version correctly.")
INSTALL(FILES ResolveCompilerPaths.cmake FindPackageMultipass.cmake FindPETSc.cmake
DESTINATION share/amdis/)
if(USE_PETSC_DEV)
list(APPEND COMPILEFLAGS "-DHAVE_PETSC_DEV")
if(ENABLE_UMFPACK)
find_file(UMFPACK_H umfpack.h
HINTS ENV CPATH /usr/include /usr/include/suitesparse /usr/include/ufsparse
DOC "headerfile umfpack.h for UMFPACK")
if(UMFPACK_H)
get_filename_component(UMFPACK_PATH ${UMFPACK_H} PATH)
include_directories(${UMFPACK_PATH} ${UFCONFIG_PATH} ${AMD_PATH})
list(APPEND COMPILEFLAGS "-DHAVE_UMFPACK=1" "-DMTL_HAS_UMFPACK")
message(FATAL_ERROR "Could not find the UMFPACK header umfpack.h.")
endif()
SET(RPM_DEPEND_STR "blas")
if(ENABLE_PNG)
find_file(PNG_H png.h
HINTS ENV CPATH /usr/include
DOC "headerfile png.h for PNG-READER")
if(PNG_H)
get_filename_component(PNG_PATH ${PNG_H} PATH)
include_directories(${PNG_PATH})
list(APPEND COMPILEFLAGS "-DHAVE_PNG=1")
else()
message(FATAL_ERROR "Could not find the PNG header png.h.")
endif()
endif(ENABLE_PNG)

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committed
SET(BDDCML_LINK_LIST "" CACHE STRING "Further libraries to be linked with BDDCML")
find_file(BDDCML_H bddcml_interface_c.h
HINTS ENV CPATH
DOC "Header bddcml_interface_c.h for the BDDCML library.")
if(BDDCML_H)
get_filename_component(BDDCML_PATH ${BDDCML_H} PATH)
include_directories(${BDDCML_PATH})
list(APPEND COMPILEFLAGS "-DHAVE_BDDC_ML=1")
list(APPEND COMPILEFLAGS "-DAdd_")
else()
message(FATAL_ERROR "Could not find BDDCML headers.")
endif()
find_library(BDDCML_LIB bddcml
HINTS ENV LIBRARY_PATH
DOC "BDDCML library")
if(BDDCML_LIB)
list(APPEND AMDIS_LIBS ${BDDCML_LIB})
else()
message(FATAL_ERROR "Could not find the BDDCML library")
endif()

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committed
SET(COMPOSITE_SOURCE_DIR ${SOURCE_DIR}/compositeFEM)
SET(COMPOSITE_FEM_SRC ${COMPOSITE_SOURCE_DIR}/CFE_Integration.cc
${COMPOSITE_SOURCE_DIR}/CFE_NormAndErrorFcts.cc
${COMPOSITE_SOURCE_DIR}/CompositeFEMMethods.cc
${COMPOSITE_SOURCE_DIR}/CompositeFEMOperator.cc
${COMPOSITE_SOURCE_DIR}/LevelSetAdaptMesh.cc
${COMPOSITE_SOURCE_DIR}/PenaltyOperator.cc
${COMPOSITE_SOURCE_DIR}/ElementLevelSet.cc
${COMPOSITE_SOURCE_DIR}/SubPolytope.cc
${COMPOSITE_SOURCE_DIR}/SubElementAssembler.cc )
set(REINIT_SOURCE_DIR ${SOURCE_DIR}/reinit)
file(GLOB REINIT_SRC ${REINIT_SOURCE_DIR}/*.cc)
include_directories(${REINIT_SOURCE_DIR})
set(MUPARSER_SOURCE_DIR ${AMDIS_SOURCE_DIR}/lib/muparser_v134)
file(GLOB MUPARSER_SRC ${MUPARSER_SOURCE_DIR}/src/*.cpp)
list(APPEND AMDIS_INCLUDE_DIRS ${MUPARSER_SOURCE_DIR}/include)
list(APPEND AMDIS_INCLUDE_DIRS ${MTL_INCLUDE_DIR})
#include_directories(${MTL_INCLUDE_DIR})
list(APPEND AMDIS_INCLUDE_DIRS ${SOURCE_DIR})
#include_directories(${SOURCE_DIR})
include_directories(${AMDIS_INCLUDE_DIRS})

Thomas Witkowski
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add_library(amdis SHARED ${AMDIS_SRC} ${PARALLEL_DOMAIN_AMDIS_SRC})
add_library(compositeFEM SHARED ${COMPOSITE_FEM_SRC})
add_library(muparser SHARED ${MUPARSER_SRC})
#target_link_libraries(compositeFEM amdis)
#target_link_libraries(reinit amdis)
list(APPEND AMDIS_LIBS amdis ${Boost_LIBRARIES})
list(APPEND COMPILEFLAGS "-D_SCL_SECURE_NO_WARNINGS" "-D_CRT_SECURE_NO_WARNINGS")

Naumann, Andreas
committed
message("compileflags: ${COMPILEFLAGS}")
#SET_TARGET_PROPERTIES(amdis PROPERTIES COMPILE_FLAGS "${COMPILEFLAGS}")
add_definitions(${COMPILEFLAGS})
if(ENABLE_MARMOT)
Message("please set marmotcc manually")
endif(ENABLE_MARMOT)
#dont change this destination. the GUI depends on it to guess the buildsystem

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committed
FILE(GLOB HEADERS "${SOURCE_DIR}/*.h")
INSTALL(FILES ${HEADERS}
DESTINATION include/amdis/)
list(APPEND deb_add_dirs "include/amdis")
FILE(GLOB HEADERS "${SOURCE_DIR}/*.hh")
INSTALL(FILES ${HEADERS}
DESTINATION include/amdis/)
FILE(GLOB HEADERS "${SOURCE_DIR}/parallel/*.h")
INSTALL(FILES ${HEADERS}
DESTINATION include/amdis/parallel/)
list(APPEND deb_add_dirs "include/amdis/parallel")
FILE(GLOB HEADERS "${SOURCE_DIR}/nonlin/*.h")
INSTALL(FILES ${HEADERS}
DESTINATION include/amdis/nonlin/)
list(APPEND deb_add_dirs "include/amdis/nonlin")
FILE(GLOB HEADERS "${SOURCE_DIR}/est/*.h")
INSTALL(FILES ${HEADERS}
DESTINATION include/amdis/est/)
list(APPEND deb_add_dirs "include/amdis/est")
FILE(GLOB HEADERS "${SOURCE_DIR}/time/*.h")
INSTALL(FILES ${HEADERS}
DESTINATION include/amdis/time/)
list(APPEND deb_add_dirs "include/amdis/time")
FILE(GLOB HEADERS "${SOURCE_DIR}/itl/*.hpp")
INSTALL(FILES ${HEADERS}
DESTINATION include/amdis/itl)
list(APPEND deb_add_dirs "include/amdis/itl")
FILE(GLOB HEADERS "${SOURCE_DIR}/io/*.h")
INSTALL(FILES ${HEADERS}
DESTINATION include/amdis/io)
list(APPEND deb_add_dirs "include/amdis/io")
FILE(GLOB HEADERS "${SOURCE_DIR}/io/*.hh")
INSTALL(FILES ${HEADERS}
DESTINATION include/amdis/io)

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committed
FILE(GLOB HEADERS "${REINIT_SOURCE_DIR}/*.h")
INSTALL(FILES ${HEADERS}
DESTINATION include/amdis/reinit)
list(APPEND deb_add_dirs "include/amdis/reinit")
FILE(GLOB HEADERS "${COMPOSITE_SOURCE_DIR}/*.h")
INSTALL(FILES ${HEADERS}
DESTINATION include/amdis/compositeFEM)
list(APPEND deb_add_dirs "include/amdis/compositeFEM")
FILE(GLOB HEADERS "${MUPARSER_SOURCE_DIR}/include/*.h")
INSTALL(FILES ${HEADERS}
DESTINATION include/amdis/muparser)
list(APPEND deb_add_dirs "include/amdis/muparser")
install(TARGETS amdis compositeFEM reinit muparser
configure_file(${AMDIS_SOURCE_DIR}/AMDISConfig.cmake.in
${AMDIS_BINARY_DIR}/AMDISConfig.cmake

Naumann, Andreas
committed
@ONLY
)
INSTALL(FILES ${AMDIS_BINARY_DIR}/AMDISConfig.cmake
DESTINATION share/amdis/)
list(APPEND deb_add_dirs "share/amdis/")
INSTALL(FILES ${AMDIS_SOURCE_DIR}/AMDISUse.cmake
DESTINATION share/amdis/)

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committed
#install mtl
INSTALL(DIRECTORY ${AMDIS_SOURCE_DIR}/lib/mtl4/
DESTINATION include/amdis/mtl4/
FILES_MATCHING PATTERN "*.hpp"
PATTERN ".svn" EXCLUDE
PATTERN ".svn/*" EXCLUDE
PATTERN "mtl4/libs" EXCLUDE
PATTERN "mtl4/extern" EXCLUDE

Naumann, Andreas
committed
)
RELATIVE ${AMDIS_SOURCE_DIR}/lib/mtl4/boost/
${AMDIS_SOURCE_DIR}/lib/mtl4/boost/*.hpp)
foreach(mtl4_file in ${mtl4_files})
get_filename_component(mtl4File_path ${mtl4_file} PATH)
list(APPEND deb_add_dirs "include/amdis/mtl4/boost/${mtl4File_path}")
endforeach(mtl4_file)
list(REMOVE_DUPLICATES deb_add_dirs)
#PACKAGES
set(CPACK_PACKAGE_NAME "AMDIS")
set(CPACK_PACKAGE_CONTACT "Andreas.Naumann@tu-dresden.de")
set(CPACK_PACKAGE_VERSION "${CurrentRevision}")
set(CPACK_GENERATOR "RPM" "DEB" "TGZ")
set(CPACK_INSTALL_PREFIX "/usr/")
configure_file(${AMDIS_SOURCE_DIR}/preinst.in
${AMDIS_BINARY_DIR}/preinst
configure_file(${AMDIS_SOURCE_DIR}/postrm.in
${AMDIS_BINARY_DIR}/postrm
set(CPACK_RPM_PACKAGE_REQUIRES "boost-devel == 1.42, ${RPM_DEPEND_STR}")
set(CPACK_DEBIAN_PACKAGE_DEPENDS "libboost-dev (== 1.42), libboost-iostreams-dev (== 1.42), libboost-system-dev (== 1.42), libboost-filesystem-dev (== 1.42)")
set(CPACK_DEBIAN_PACKAGE_CONTROL_EXTRA "${AMDIS_BINARY_DIR}/preinst" "${AMDIS_BINARY_DIR}/postrm")

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committed
include(CPack)