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Commit 159489a8 authored by Thomas Witkowski's avatar Thomas Witkowski
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* Bugfix in ParallelDomainProblem (segdev)

parent 746b26ef
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Showing with 147 additions and 134 deletions
AMDiS/libtool
View file @ 159489a8
......@@ -30,10 +30,10 @@
# the same distribution terms that you use for the rest of that program.
# A sed program that does not truncate output.
SED="/bin/sed"
SED="/usr/bin/sed"
# Sed that helps us avoid accidentally triggering echo(1) options like -n.
Xsed="/bin/sed -e 1s/^X//"
Xsed="/usr/bin/sed -e 1s/^X//"
# The HP-UX ksh and POSIX shell print the target directory to stdout
# if CDPATH is set.
......@@ -44,7 +44,7 @@ available_tags=" CXX F77"
# ### BEGIN LIBTOOL CONFIG
# Libtool was configured on host NWRW15:
# Libtool was configured on host deimos103:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -66,12 +66,12 @@ fast_install=yes
# The host system.
host_alias=
host=i686-pc-linux-gnu
host=x86_64-unknown-linux-gnu
host_os=linux-gnu
# The build system.
build_alias=
build=i686-pc-linux-gnu
build=x86_64-unknown-linux-gnu
build_os=linux-gnu
# An echo program that does not interpret backslashes.
......@@ -82,13 +82,13 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
LTCC="gcc"
LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
# A language-specific compiler.
CC="gcc"
CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# Is the compiler the GNU C compiler?
with_gcc=yes
......@@ -97,7 +97,7 @@ with_gcc=yes
EGREP="grep -E"
# The linker used to build libraries.
LD="/usr/bin/ld"
LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
# Whether we need hard or soft links.
LN_S="ln -s"
......@@ -171,7 +171,7 @@ dlopen_self=unknown
dlopen_self_static=unknown
# Compiler flag to prevent dynamic linking.
link_static_flag="-static"
link_static_flag=""
# Compiler flag to turn off builtin functions.
no_builtin_flag=" -fno-builtin"
......@@ -325,10 +325,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec=" /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/"
sys_lib_search_path_spec=" /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/"
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib "
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
......@@ -6760,7 +6760,7 @@ build_old_libs=`case $build_libtool_libs in yes) $echo no;; *) $echo yes;; esac`
# End:
# ### BEGIN LIBTOOL TAG CONFIG: CXX
# Libtool was configured on host NWRW15:
# Libtool was configured on host deimos103:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -6782,12 +6782,12 @@ fast_install=yes
# The host system.
host_alias=
host=i686-pc-linux-gnu
host=x86_64-unknown-linux-gnu
host_os=linux-gnu
# The build system.
build_alias=
build=i686-pc-linux-gnu
build=x86_64-unknown-linux-gnu
build_os=linux-gnu
# An echo program that does not interpret backslashes.
......@@ -6798,13 +6798,13 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
LTCC="gcc"
LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
# A language-specific compiler.
CC="g++"
CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpiCC"
# Is the compiler the GNU C compiler?
with_gcc=yes
......@@ -6813,7 +6813,7 @@ with_gcc=yes
EGREP="grep -E"
# The linker used to build libraries.
LD="/usr/bin/ld"
LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
# Whether we need hard or soft links.
LN_S="ln -s"
......@@ -6887,7 +6887,7 @@ dlopen_self=unknown
dlopen_self_static=unknown
# Compiler flag to prevent dynamic linking.
link_static_flag="-static"
link_static_flag=""
# Compiler flag to turn off builtin functions.
no_builtin_flag=" -fno-builtin"
......@@ -6942,11 +6942,11 @@ striplib="strip --strip-unneeded"
# Dependencies to place before the objects being linked to create a
# shared library.
predep_objects="/usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crti.o /usr/lib/gcc/i386-redhat-linux/4.1.2/crtbeginS.o"
predep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtbeginS.o"
# Dependencies to place after the objects being linked to create a
# shared library.
postdep_objects="/usr/lib/gcc/i386-redhat-linux/4.1.2/crtendS.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crtn.o"
postdep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtendS.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crtn.o"
# Dependencies to place before the objects being linked to create a
# shared library.
......@@ -6954,11 +6954,11 @@ predeps=""
# Dependencies to place after the objects being linked to create a
# shared library.
postdeps="-lstdc++ -lm -lgcc_s -lc -lgcc_s"
postdeps="-lmpi_cxx -lmpi -lopen-rte -lopen-pal -libverbs -lrt -lnuma -ldl -lnsl -lutil -ldl -lstdc++ -lm -lgcc_s -lpthread -lc -lgcc_s"
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path="-L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../.."
compiler_lib_search_path="-L/usr/lib64 -L/licsoft/libraries/openmpi/1.2.6/64bit/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.."
# Method to check whether dependent libraries are shared objects.
deplibs_check_method="pass_all"
......@@ -7038,10 +7038,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec=" /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/"
sys_lib_search_path_spec=" /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/"
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib "
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
......@@ -7065,7 +7065,7 @@ include_expsyms=""
# ### BEGIN LIBTOOL TAG CONFIG: F77
# Libtool was configured on host NWRW15:
# Libtool was configured on host deimos103:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -7087,12 +7087,12 @@ fast_install=yes
# The host system.
host_alias=
host=i686-pc-linux-gnu
host=x86_64-unknown-linux-gnu
host_os=linux-gnu
# The build system.
build_alias=
build=i686-pc-linux-gnu
build=x86_64-unknown-linux-gnu
build_os=linux-gnu
# An echo program that does not interpret backslashes.
......@@ -7103,7 +7103,7 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
LTCC="gcc"
LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
......@@ -7112,13 +7112,13 @@ LTCFLAGS="-g -O2"
CC="g77"
# Is the compiler the GNU C compiler?
with_gcc=yes
with_gcc=
# An ERE matcher.
EGREP="grep -E"
# The linker used to build libraries.
LD="/usr/bin/ld"
LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
# Whether we need hard or soft links.
LN_S="ln -s"
......@@ -7346,10 +7346,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec=" /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../ /lib/i386-redhat-linux/3.4.6/ /lib/ /usr/lib/i386-redhat-linux/3.4.6/ /usr/lib/"
sys_lib_search_path_spec=" /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/ /usr/lib/gcc/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../ /lib/x86_64-suse-linux/3.3.5/ /lib/ /usr/lib/x86_64-suse-linux/3.3.5/ /usr/lib/"
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib "
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
......
AMDiS/src/ElInfo2d.cc
View file @ 159489a8
......@@ -34,8 +34,8 @@ namespace AMDiS {
FUNCNAME("ElInfo::fillMacroInfo()");
macroElement_ = const_cast<MacroElement*>(mel);
element_ = const_cast<Element*>(mel->getElement());
parent_ = NULL;
element_ = const_cast<Element*>(mel->getElement());
parent_ = NULL;
level = 0;
if (fillFlag_.isSet(Mesh::FILL_COORDS) ||
......
AMDiS/src/Element.cc
View file @ 159489a8
......@@ -14,11 +14,11 @@ namespace AMDiS {
if (!elementData)
return -1;
ElementRegion_ED* red = dynamic_cast<ElementRegion_ED*>(elementData->getElementData(ELEMENT_REGION));
ElementRegion_ED* red =
dynamic_cast<ElementRegion_ED*>(elementData->getElementData(ELEMENT_REGION));
if (red) {
return red->getRegion();
}
if (red)
return red->getRegion();
return -1;
}
......@@ -52,16 +52,14 @@ namespace AMDiS {
// call destructor through Mesh::freeElement !!!
Element::~Element()
{
if (child[0]) {
if (child[0])
DELETE child[0];
}
if (child[1]) {
DELETE child[1];
}
if (child[1])
DELETE child[1];
if (newCoord) {
DELETE newCoord;
}
if (newCoord)
DELETE newCoord;
if (elementData) {
elementData->deleteDecorated();
......
AMDiS/src/Element.h
View file @ 159489a8
......@@ -22,10 +22,6 @@
#ifndef AMDIS_ELEMENT_H
#define AMDIS_ELEMENT_H
// ============================================================================
// ===== includes =============================================================
// ============================================================================
#include "Global.h"
#include "RefinementManager.h"
#include "Serializable.h"
......@@ -34,23 +30,14 @@
namespace AMDiS {
// ============================================================================
// ===== forward declarations =================================================
// ============================================================================
class Mesh;
class DOFAdmin;
template<typename T> class WorldVector;
class CoarseningManager;
template<typename T, GeoIndex d> class FixVec;
#define AMDIS_UNDEFINED 5
// ============================================================================
// ===== class Element ========================================================
// ============================================================================
/** \ingroup Triangulation
* \brief
* Base class for Line, Triangle, Tetrahedron
......@@ -103,8 +90,6 @@ namespace AMDiS {
*/
Element* cloneWithDOFs();
// ===== getting methods ======================================================
/** \name getting methods
* \{
*/
......@@ -232,8 +217,6 @@ namespace AMDiS {
/** \} */
// ===== setting methods ======================================================
/** \name setting methods
* \{
*/
......@@ -454,9 +437,9 @@ namespace AMDiS {
/// Deserialize an element from a file.
void deserialize(std::istream &in);
///
int calcMemoryUsage();
// ===== protected methods ====================================================
protected:
/// Sets Element's \ref dof pointer. Used by friend class Mesh.
void setDOFPtrs();
......
AMDiS/src/MacroElement.h
View file @ 159489a8
......@@ -40,10 +40,6 @@ namespace AMDiS {
template<typename T> class WorldVector;
template<typename T> class DimVec;
// ============================================================================
// ===== class MacroElement ===================================================
// ============================================================================
/** \ingroup Triangulation
* \brief
* MacroElements form the macro triangulation of a Mesh. In a MacroElement
......@@ -64,8 +60,6 @@ namespace AMDiS {
///
MacroElement& operator=(const MacroElement &el);
// ===== getting methods ======================================================
/** \name getting methods
* \{
*/
......@@ -117,8 +111,6 @@ namespace AMDiS {
/** \} */
// ===== setting methods ======================================================
/** \name setting methods
* \{
*/
......
AMDiS/src/Mesh.cc
View file @ 159489a8
......@@ -23,7 +23,6 @@
#include "Projection.h"
#include "ElInfoStack.h"
namespace AMDiS {
#define TIME_USED(f,s) ((double)((s)-(f))/(double)CLOCKS_PER_SEC)
......@@ -268,45 +267,91 @@ namespace AMDiS {
me->setIndex(macroElements.size());
}
void Mesh::removeMacroElement(MacroElement* me)
void Mesh::removeMacroElements(std::vector<MacroElement*>& macros)
{
FUNCNAME("Mesh::removeMacroElement()");
TEST_EXIT(dim == 2)("Not yet implemented!\n");
bool found = false;
// Remove the macro element from mesh's list of all macro elements.
for (std::deque<MacroElement*>::iterator it = macroElements.begin();
it != macroElements.end();
++it) {
if (*it == me) {
macroElements.erase(it, it + 1);
found = true;
break;
}
// Map that stores for each dof pointer (which may have a list of dofs)
// all macro element indices that own the dof.
std::map<const DegreeOfFreedom*, std::set<MacroElement*> > dofsOwner;
// Determine all dof owner macro elements.
for (std::deque<MacroElement*>::iterator macroIt = macroElements.begin();
macroIt != macroElements.end();
++macroIt) {
Element *el = (*macroIt)->getElement();
for (int i = 0; i < 3; i++)
dofsOwner[el->getDOF(i)].insert(*macroIt);
}
TEST_EXIT(found)("Cannot find MacroElement that should be removed!\n");
// Go through all neighbours of the macro element and remove this macro element
// to be neighbour of some other macro element.
for (int i = 0; i < dim; i++) {
if (me->getNeighbour(i)) {
for (int j = 0; j < dim; j++) {
if (me->getNeighbour(i)->getNeighbour(j) == me) {
me->getNeighbour(i)->setNeighbour(j, NULL);
// Remove all the given macro elements.
for (std::vector<MacroElement*>::iterator macroIt = macros.begin();
macroIt != macros.end();
++macroIt) {
bool found = false;
// Remove the macro element from mesh's list of all macro elements.
for (std::deque<MacroElement*>::iterator it = macroElements.begin();
it != macroElements.end();
++it) {
if (*it == *macroIt) {
macroElements.erase(it, it + 1);
found = true;
break;
}
}
TEST_EXIT(found)("Cannot find MacroElement that should be removed!\n");
// Go through all neighbours of the macro element and remove this macro element
// to be neighbour of some other macro element.
for (int i = 0; i <= dim; i++) {
if ((*macroIt)->getNeighbour(i)) {
for (int j = 0; j <= dim; j++) {
if ((*macroIt)->getNeighbour(i)->getNeighbour(j) == *macroIt) {
(*macroIt)->getNeighbour(i)->setNeighbour(j, NULL);
}
}
} else {
// There is no neighbour at this edge, so we have to decrease the number
// of edges in the mesh.
nEdges--;
}
}
nLeaves--;
nElements--;
// Remove this macro element from the dof owner list.
for (std::map<const DegreeOfFreedom*, std::set<MacroElement*> >::iterator dofsIt = dofsOwner.begin();
dofsIt != dofsOwner.end();
++dofsIt) {
std::set<MacroElement*>::iterator mIt = dofsIt->second.find(*macroIt);
if (mIt != dofsIt->second.end())
dofsIt->second.erase(mIt);
}
// And remove the macro element from memory
delete *macroIt;
}
int nRemainDofs = 0;
// Check now all the dofs, that have no owner anymore and therefore have to
// be removed.
for (std::map<const DegreeOfFreedom*, std::set<MacroElement*> >::iterator dofsIt = dofsOwner.begin();
dofsIt != dofsOwner.end();
++dofsIt) {
if (dofsIt->second.size() == 0) {
dofsOwner.erase(dofsIt++);
} else {
// There is no neighbour at this edge, so we have to decrease the number
// of edges in the mesh.
nEdges--;
nRemainDofs++;
}
}
nLeaves--;
nElements--;
nVertices = nRemainDofs;
}
int Mesh::traverse(int level, Flag flag, int (*el_fct)(ElInfo*))
......
AMDiS/src/Mesh.h
View file @ 159489a8
......@@ -415,11 +415,11 @@ namespace AMDiS {
void addMacroElement(MacroElement* me);
/* \brief
* Removes a macro element from the mesh. This works only for the case, that
* there are no global or local refinements, i.e., all macro elements have no
* children.
* Removes a set of macro elements from the mesh. This works only for the case,
* that there are no global or local refinements, i.e., all macro elements have
* no children.
*/
void removeMacroElement(MacroElement* me);
void removeMacroElements(std::vector<MacroElement*>& macros);
/// Frees the array of DOF pointers (see \ref createDOFPtrs)
void freeDOFPtrs(DegreeOfFreedom **ptrs);
......
AMDiS/src/ParallelDomainProblem.cc
View file @ 159489a8
......@@ -18,6 +18,7 @@ namespace AMDiS {
: iterationIF(iIF),
timeIF(tIF),
mesh(m),
initialPartitionMesh(true),
nRankDOFs(0)
{
mpiRank = MPI::COMM_WORLD.Get_rank();
......@@ -95,23 +96,20 @@ namespace AMDiS {
}
}
bool removed = false;
do {
removed = false;
for (std::deque<MacroElement*>::iterator it = mesh->firstMacroElement();
it != mesh->endOfMacroElements();
++it) {
PartitionElementData *partitionData =
dynamic_cast<PartitionElementData*>
((*it)->getElement()->getElementData(PARTITION_ED));
if (partitionData->getPartitionStatus() != IN) {
mesh->removeMacroElement(*it);
removed = true;
break;
}
std::vector<MacroElement*> macrosToRemove;
for (std::deque<MacroElement*>::iterator it = mesh->firstMacroElement();
it != mesh->endOfMacroElements();
++it) {
PartitionElementData *partitionData =
dynamic_cast<PartitionElementData*>
((*it)->getElement()->getElementData(PARTITION_ED));
if (partitionData->getPartitionStatus() != IN) {
macrosToRemove.push_back(*it);
}
} while (removed);
}
mesh->removeMacroElements(macrosToRemove);
int *gOrder = (int*)(malloc(sizeof(int) * rankDofs.size()));
int *lOrder = (int*)(malloc(sizeof(int) * rankDofs.size()));
......
AMDiS/src/RefinementManager.cc
View file @ 159489a8
......@@ -34,10 +34,8 @@ namespace AMDiS {
return static_cast<Flag>(0);
globalMark = mark;
aMesh->traverse(-1,
Mesh::CALL_LEAF_EL |
Mesh::FILL_COORDS |
Mesh::FILL_BOUND,
aMesh->traverse(-1,
Mesh::CALL_LEAF_EL | Mesh::FILL_COORDS | Mesh::FILL_BOUND,
globalRefineFct);
return refineMesh(aMesh);
}
......@@ -51,23 +49,22 @@ namespace AMDiS {
mesh = aMesh;
int n_elements = mesh->getNumberOfLeaves();
ElInfo *el_info;
ElInfo *elInfo;
newCoords = false;
stack = NEW TraverseStack;
doMoreRecursiveRefine = true;
while (doMoreRecursiveRefine) {
doMoreRecursiveRefine = false;
el_info = stack->traverseFirst(mesh, -1,
Mesh::CALL_LEAF_EL | Mesh::FILL_NEIGH| Mesh::FILL_BOUND);
while (el_info) {
if (el_info->getElement()->getMark() > 0) {
elInfo = stack->traverseFirst(mesh, -1,
Mesh::CALL_LEAF_EL | Mesh::FILL_NEIGH | Mesh::FILL_BOUND);
while (elInfo) {
if (elInfo->getElement()->getMark() > 0) {
doMoreRecursiveRefine = doMoreRecursiveRefine ||
(el_info->getElement()->getMark() > 1);
el_info = refineFunction(el_info);
}
el_info = stack->traverseNext(el_info);
(elInfo->getElement()->getMark() > 1);
elInfo = refineFunction(elInfo);
}
elInfo = stack->traverseNext(elInfo);
}
}
......
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