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Commit 2a0239ea authored by Thomas Witkowski's avatar Thomas Witkowski
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Code refactoring.

parent 13579ff8
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Inline Side-by-side
Showing with 267 additions and 252 deletions
AMDiS/src/ElementRegion_ED.h
View file @ 2a0239ea
......@@ -24,6 +24,7 @@
#include "ElementData.h"
#include "FixVec.h"
#include "Serializer.h"
namespace AMDiS {
......@@ -92,13 +93,13 @@ namespace AMDiS {
void serialize(std::ostream& out)
{
ElementData::serialize(out);
out.write(reinterpret_cast<const char*>(&region), sizeof(int));
SerUtil::serialize(out, region);
}
void deserialize(std::istream& in)
{
ElementData::deserialize(in);
in.read(reinterpret_cast<char*>(&region), sizeof(int));
SerUtil::deserialize(in, region);
}
inline void setRegion(int r)
......
AMDiS/src/LeafData.cc
View file @ 2a0239ea
#include "LeafData.h"
#include "Element.h"
#include "Mesh.h"
#include "Serializer.h"
namespace AMDiS {
......@@ -42,6 +43,18 @@ namespace AMDiS {
ElementData::coarsenElementData(parent, thisChild, otherChild, elTypeParent);
}
void LeafDataEstimatable::serialize(std::ostream& out)
{
ElementData::serialize(out);
SerUtil::serialize(out, errorEstimate);
}
void LeafDataEstimatable::deserialize(std::istream& in)
{
ElementData::deserialize(in);
SerUtil::deserialize(in, errorEstimate);
}
bool LeafDataEstimatableVec::refineElementData(Element* parent,
Element* child1,
Element* child2,
......@@ -65,8 +78,35 @@ namespace AMDiS {
TEST_EXIT_DBG(test)("couldn't delete LeafDataEstimatableVec at otherChild");
parent->setElementData(new LeafDataEstimatableVec(parent->getElementData()));
ElementData::coarsenElementData(parent, thisChild, otherChild, elTypeParent);
}
}
void LeafDataEstimatableVec::serialize(std::ostream& out)
{
ElementData::serialize(out);
unsigned int size = errorEstimate.size();
SerUtil::serialize(out, size);
for (std::map<int, double>::iterator it = errorEstimate.begin();
it != errorEstimate.end(); ++it) {
SerUtil::serialize(out, it->first);
SerUtil::serialize(out, it->second);
}
}
void LeafDataEstimatableVec::deserialize(std::istream& in)
{
ElementData::deserialize(in);
unsigned size;
SerUtil::deserialize(in, size);
for (unsigned int i = 0; i < size; i++) {
int index;
double estimate;
SerUtil::deserialize(in, index);
SerUtil::deserialize(in, estimate);
errorEstimate[index] = estimate;
}
}
bool LeafDataCoarsenable::refineElementData(Element* parent,
Element* child1,
Element* child2,
......@@ -90,6 +130,18 @@ namespace AMDiS {
ElementData::coarsenElementData(parent, thisChild, otherChild, elTypeParent);
}
void LeafDataCoarsenable::serialize(std::ostream& out)
{
ElementData::serialize(out);
SerUtil::serialize(out, coarseningError);
}
void LeafDataCoarsenable::deserialize(std::istream& in)
{
ElementData::deserialize(in);
SerUtil::deserialize(in, coarseningError);
}
bool LeafDataCoarsenableVec::refineElementData(Element* parent,
Element* child1,
Element* child2,
......@@ -112,6 +164,33 @@ namespace AMDiS {
ElementData::coarsenElementData(parent, thisChild, otherChild, elTypeParent);
}
void LeafDataCoarsenableVec::serialize(std::ostream& out)
{
ElementData::serialize(out);
unsigned int size = coarseningError.size();
SerUtil::serialize(out, size);
for (std::map<int, double>::iterator it = coarseningError.begin();
it != coarseningError.end(); ++it) {
SerUtil::serialize(out, it->first);
SerUtil::serialize(out, it->second);
}
}
void LeafDataCoarsenableVec::deserialize(std::istream& in)
{
ElementData::deserialize(in);
unsigned int size;
SerUtil::deserialize(in, size);
for (unsigned int i = 0; i < size; i++) {
int index;
double estimate;
SerUtil::deserialize(in, index);
SerUtil::deserialize(in, estimate);
coarseningError[index] = estimate;
}
}
bool LeafDataPeriodic::refineElementData(Element* parent,
Element* child1,
Element* child2,
......@@ -176,6 +255,27 @@ namespace AMDiS {
return false;
}
void LeafDataPeriodic::serialize(std::ostream& out)
{
ElementData::serialize(out);
unsigned int size = periodicInfoList.size();
SerUtil::serialize(out, size);
for (std::list<PeriodicInfo>::iterator it = periodicInfoList.begin();
it != periodicInfoList.end(); ++it)
it->serialize(out);
}
void LeafDataPeriodic::deserialize(std::istream& in)
{
ElementData::deserialize(in);
unsigned int size;
SerUtil::deserialize(in, size);
periodicInfoList.resize(size);
for (std::list<PeriodicInfo>::iterator it = periodicInfoList.begin();
it != periodicInfoList.end(); ++it)
it->deserialize(in);
}
LeafDataPeriodic::PeriodicInfo::PeriodicInfo(const PeriodicInfo &rhs)
{
periodicMode = rhs.periodicMode;
......@@ -184,17 +284,14 @@ namespace AMDiS {
if (rhs.periodicCoords) {
int dim = rhs.periodicCoords->getSize() - 1;
periodicCoords = new DimVec<WorldVector<double> >(dim, NO_INIT);
for (int i = 0; i < dim + 1; i++) {
for (int i = 0; i < dim + 1; i++)
(*periodicCoords)[i] = (*(rhs.periodicCoords))[i];
}
} else {
periodicCoords = NULL;
}
}
LeafDataPeriodic::PeriodicInfo::PeriodicInfo(int mode,
BoundaryType t,
int side,
LeafDataPeriodic::PeriodicInfo::PeriodicInfo(int mode, BoundaryType t, int side,
const DimVec<WorldVector<double> > *coords)
: periodicMode(mode),
type(t),
......@@ -204,9 +301,44 @@ namespace AMDiS {
if (coords) {
int dim = coords->getSize() - 1;
periodicCoords = new DimVec<WorldVector<double> >(dim, NO_INIT);
for (int i = 0; i < dim + 1; i++) {
for (int i = 0; i < dim + 1; i++)
(*periodicCoords)[i] = (*coords)[i];
}
}
}
void LeafDataPeriodic::PeriodicInfo::serialize(std::ostream &out)
{
SerUtil::serialize(out, periodicMode);
SerUtil::serialize(out, type);
SerUtil::serialize(out, elementSide);
if (periodicCoords) {
int size = periodicCoords->getSize();
SerUtil::serialize(out, size);
for (int i = 0; i < size; i++)
(*periodicCoords)[i].serialize(out);
} else {
int size = 0;
SerUtil::serialize(out, size);
}
}
void LeafDataPeriodic::PeriodicInfo::deserialize(std::istream &in)
{
SerUtil::deserialize(in, periodicMode);
SerUtil::deserialize(in, type);
SerUtil::deserialize(in, elementSide);
int size;
SerUtil::deserialize(in, size);
if (periodicCoords)
delete periodicCoords;
if (size == 0) {
periodicCoords = NULL;
} else {
periodicCoords = new DimVec<WorldVector<double> >(size-1, NO_INIT);
for (int i = 0; i < size; i++)
(*periodicCoords)[i].deserialize(in);
}
}
}
AMDiS/src/LeafData.h
View file @ 2a0239ea
......@@ -29,7 +29,6 @@
#include "ElementData.h"
#include "Boundary.h"
namespace AMDiS {
class LeafDataEstimatableInterface
......@@ -119,17 +118,9 @@ namespace AMDiS {
return ESTIMATABLE;
}
void serialize(std::ostream& out)
{
ElementData::serialize(out);
out.write(reinterpret_cast<const char*>(&errorEstimate), sizeof(double));
}
void serialize(std::ostream& out);
void deserialize(std::istream& in)
{
ElementData::deserialize(in);
in.read(reinterpret_cast<char*>(&errorEstimate), sizeof(double));
}
void deserialize(std::istream& in);
private:
double errorEstimate;
......@@ -199,31 +190,9 @@ namespace AMDiS {
return newObj;
}
void serialize(std::ostream& out)
{
ElementData::serialize(out);
unsigned int size = errorEstimate.size();
out.write(reinterpret_cast<const char*>(&size), sizeof(unsigned int));
std::map<int, double>::iterator it;
for (it = errorEstimate.begin(); it != errorEstimate.end(); ++it) {
out.write(reinterpret_cast<const char*>(&(it->first)), sizeof(int));
out.write(reinterpret_cast<const char*>(&(it->second)), sizeof(double));
}
}
void serialize(std::ostream& out);
void deserialize(std::istream& in)
{
ElementData::deserialize(in);
unsigned size;
in.read(reinterpret_cast<char*>(&size), sizeof(unsigned int));
for (unsigned int i = 0; i < size; i++) {
int index;
double estimate;
in.read(reinterpret_cast<char*>(&index), sizeof(int));
in.read(reinterpret_cast<char*>(&estimate), sizeof(double));
errorEstimate[index] = estimate;
}
}
void deserialize(std::istream& in);
std::string getTypeName() const
{
......@@ -293,7 +262,8 @@ namespace AMDiS {
int elTypeParent);
/// Implements ElementData::clone().
inline ElementData *clone() const {
inline ElementData *clone() const
{
// create new estimatable leaf data
LeafDataCoarsenable *newObj = new LeafDataCoarsenable(NULL);
......@@ -316,23 +286,17 @@ namespace AMDiS {
return coarseningError;
}
void serialize(std::ostream& out)
{
ElementData::serialize(out);
out.write(reinterpret_cast<const char*>(&coarseningError), sizeof(double));
}
void serialize(std::ostream& out);
void deserialize(std::istream& in)
{
ElementData::deserialize(in);
in.read(reinterpret_cast<char*>(&coarseningError), sizeof(double));
}
void deserialize(std::istream& in);
std::string getTypeName() const {
std::string getTypeName() const
{
return "LeafDataCoarsenable";
}
inline const int getTypeID() const {
inline const int getTypeID() const
{
return COARSENABLE;
}
......@@ -407,31 +371,9 @@ namespace AMDiS {
return coarseningError[index];
}
void serialize(std::ostream& out)
{
ElementData::serialize(out);
unsigned int size = coarseningError.size();
out.write(reinterpret_cast<const char*>(&size), sizeof(unsigned int));
std::map<int, double>::iterator it;
for (it = coarseningError.begin(); it != coarseningError.end(); ++it) {
out.write(reinterpret_cast<const char*>(&(it->first)), sizeof(int));
out.write(reinterpret_cast<const char*>(&(it->second)), sizeof(double));
}
}
void serialize(std::ostream& out);
void deserialize(std::istream& in)
{
ElementData::deserialize(in);
unsigned int size;
in.read(reinterpret_cast<char*>(&size), sizeof(unsigned int));
for (unsigned int i = 0; i < size; i++) {
int index;
double estimate;
in.read(reinterpret_cast<char*>(&index), sizeof(int));
in.read(reinterpret_cast<char*>(&estimate), sizeof(double));
coarseningError[index] = estimate;
}
}
void deserialize(std::istream& in);
std::string getTypeName() const
{
......@@ -489,41 +431,9 @@ namespace AMDiS {
PeriodicInfo(const PeriodicInfo &rhs);
void serialize(std::ostream &out)
{
out.write(reinterpret_cast<const char*>(&periodicMode), sizeof(int));
out.write(reinterpret_cast<const char*>(&type), sizeof(BoundaryType));
out.write(reinterpret_cast<const char*>(&elementSide), sizeof(int));
if (periodicCoords) {
int size = periodicCoords->getSize();
out.write(reinterpret_cast<const char*>(&size), sizeof(int));
for (int i = 0; i < size; i++) {
(*periodicCoords)[i].serialize(out);
}
} else {
int size = 0;
out.write(reinterpret_cast<const char*>(&size), sizeof(int));
}
}
void deserialize(std::istream &in)
{
in.read(reinterpret_cast<char*>(&periodicMode), sizeof(int));
in.read(reinterpret_cast<char*>(&type), sizeof(BoundaryType));
in.read(reinterpret_cast<char*>(&elementSide), sizeof(int));
void serialize(std::ostream &out);
int size;
in.read(reinterpret_cast<char*>(&size), sizeof(int));
if (periodicCoords)
delete periodicCoords;
if (size == 0) {
periodicCoords = NULL;
} else {
periodicCoords = new DimVec<WorldVector<double> >(size-1, NO_INIT);
for (int i = 0; i < size; i++)
(*periodicCoords)[i].deserialize(in);
}
}
void deserialize(std::istream &in);
int periodicMode;
......@@ -565,26 +475,9 @@ namespace AMDiS {
return periodicInfoList;
}
void serialize(std::ostream& out)
{
ElementData::serialize(out);
unsigned int size = periodicInfoList.size();
out.write(reinterpret_cast<const char*>(&size), sizeof(unsigned int));
std::list<PeriodicInfo>::iterator it;
for (it = periodicInfoList.begin(); it != periodicInfoList.end(); ++it)
it->serialize(out);
}
void serialize(std::ostream& out);
void deserialize(std::istream& in)
{
ElementData::deserialize(in);
unsigned int size;
in.read(reinterpret_cast<char*>(&size), sizeof(unsigned int));
periodicInfoList.resize(size);
std::list<PeriodicInfo>::iterator it;
for (it = periodicInfoList.begin(); it != periodicInfoList.end(); ++it)
it->deserialize(in);
}
void deserialize(std::istream& in);
std::string getTypeName() const
{
......@@ -596,9 +489,7 @@ namespace AMDiS {
return PERIODIC;
}
bool refineElementData(Element* parent,
Element* child1,
Element* child2,
bool refineElementData(Element* parent, Element* child1, Element* child2,
int elType);
private:
......
AMDiS/src/Parameters.cc
View file @ 2a0239ea
#include "Parameters.h"
#include <fstream>
#include <sstream>
#include <algorithm>
......@@ -8,6 +7,8 @@
#include <sys/types.h>
#include <sys/stat.h>
#include <unistd.h>
#include "Parameters.h"
#include "Serializer.h"
namespace AMDiS {
......@@ -752,8 +753,50 @@ namespace AMDiS {
delete singlett;
}
int Parameters::param::operator==(const param& aParam)const{
void Parameters::serialize(std::ostream &out)
{
SerUtil::serialize(out, paramInfo);
SerUtil::serialize(out, msgInfo);
SerUtil::serialize(out, msgWait);
int size = static_cast<int>(allParam.size());
SerUtil::serialize(out, size);
for (int i = 0; i < size; i++)
allParam[i].serialize(out);
}
void Parameters::deserialize(std::istream &in)
{
SerUtil::deserialize(in, paramInfo);
SerUtil::deserialize(in, msgInfo);
SerUtil::deserialize(in, msgWait);
int size;
SerUtil::deserialize(in, size);
allParam.resize(size);
for (int i = 0; i < size; i++)
allParam[i].deserialize(in);
}
int Parameters::param::operator==(const param& aParam) const
{
return key == aParam.key;
}
void Parameters::param::serialize(std::ostream &out)
{
out << key << std::endl;
out << parameters << std::endl;
out << filename << std::endl;
out << funcName << std::endl;
SerUtil::serialize(out, lineNo);
}
void Parameters::param::deserialize(std::istream &in)
{
in >> key; in.get();
in >> parameters; in.get();
in >> filename; in.get();
in >> funcName; in.get();
SerUtil::deserialize(in, lineNo);
}
}
AMDiS/src/Parameters.h
View file @ 2a0239ea
......@@ -31,10 +31,6 @@
namespace AMDiS {
// ============================================================================
// ===== class Parameters =====================================================
// ============================================================================
/** \ingroup Common
* \brief
* Many procedures need parameters, for example the maximal number of
......@@ -71,9 +67,7 @@ namespace AMDiS {
* argument flags, replacing macros by their definitions in the parameter
* file and including files specified by \#include"...".
*/
static void init(int print,
std::string filename,
const char *flags=NULL);
static void init(int print, std::string filename, const char *flags = NULL);
/** \brief
* Reads all arguments which are provided to the program. The init filenames
......@@ -182,37 +176,24 @@ namespace AMDiS {
const char *format,
...);
/** \brief
* Like getGlobalParameter(flag, key, "%s", param->c_str()).
*/
static int getGlobalParameter(int flag,
const std::string& key,
std::string *param);
/// Like getGlobalParameter(flag, key, "%s", param->c_str()).
static int getGlobalParameter(int flag, const std::string& key, std::string *param);
/** \brief
* Prints all defined parameters to the message stream
*/
/// Prints all defined parameters to the message stream
static void printParameters();
/** \brief
* Used by macro \ref GET_PARAMETER to generate infos about the calling
* function.
*/
static int initFuncName(const char *,
const char *,
int call_line);
/// Used by macro \ref GET_PARAMETER to generate infos about the calling function.
static int initFuncName(const char *, const char *, int call_line);
/** \brief
* Returns specified info level
*/
static int getMsgInfo() {
/// Returns specified info level
static int getMsgInfo()
{
return (singlett) ? singlett->msgInfo : 0;
}
/** \brief
* Returns specified wait value
*/
static int getMsgWait() {
/// Returns specified wait value
static int getMsgWait()
{
return (singlett) ? singlett->msgWait : 0;
}
......@@ -224,43 +205,24 @@ namespace AMDiS {
*/
static void save(const std::string file, int info);
/** \brief
* Checks whether parameters are initialized. if not, call init()
*/
static bool initialized() {
/// Checks whether parameters are initialized. if not, call init()
static bool initialized()
{
return (singlett != NULL);
}
static Parameters *getSingleton() {
static Parameters *getSingleton()
{
return singlett;
}
static void clear();
// ===== Serializable implementation =====
/// Writes parameters to an output stream.
void serialize(std::ostream &out);
void serialize(std::ostream &out) {
out.write(reinterpret_cast<const char*>(&paramInfo), sizeof(int));