Added parallel field split preconditioner for the Schur complement approach.

7d1db034 · Thomas Witkowski · cf3cfb5d · 7d1db034 · 7d1db034 · 7d1db034
Commit 7d1db034 authored Mar 17, 2011 by Thomas Witkowski
12 changed files
--- a/AMDiS/Makefile.in
+++ b/AMDiS/Makefile.in
@@ -142,7 +142,6 @@ PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PETSC_DIR = @PETSC_DIR@
 RANLIB = @RANLIB@
-SED = @SED@
 SET_MAKE = @SET_MAKE@
 SHELL = @SHELL@
 STRIP = @STRIP@
@@ -418,7 +417,7 @@ distdir: $(DISTFILES)
 	      || exit 1; \
 	  fi; \
 	done
-	-find $(distdir) -type d ! -perm -755 -exec chmod a+rwx,go+rx {} \; -o \
+	-find $(distdir) -type d ! -perm -777 -exec chmod a+rwx {} \; -o \
 	  ! -type d ! -perm -444 -links 1 -exec chmod a+r {} \; -o \
 	  ! -type d ! -perm -400 -exec chmod a+r {} \; -o \
 	  ! -type d ! -perm -444 -exec $(SHELL) $(install_sh) -c -m a+r {} {} \; \

--- a/AMDiS/aclocal.m4
+++ b/AMDiS/aclocal.m4
@@ -1578,27 +1578,10 @@ linux*)
  # before this can be enabled.
  hardcode_into_libs=yes

-  # find out which ABI we are using
-  libsuff=
-  case "$host_cpu" in
-  x86_64*|s390x*|powerpc64*)
-    echo '[#]line __oline__ "configure"' > conftest.$ac_ext
-    if AC_TRY_EVAL(ac_compile); then
-      case `/usr/bin/file conftest.$ac_objext` in
-      *64-bit*)
-        libsuff=64
-        sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}"
-        ;;
-      esac
-    fi
-    rm -rf conftest*
-    ;;
-  esac
-
  # Append ld.so.conf contents to the search path
  if test -f /etc/ld.so.conf; then
-    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
-    sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra"
+    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
+    sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
  fi

  # We used to test for /lib/ld.so.1 and disable shared libraries on
@@ -4305,9 +4288,6 @@ CC=$lt_[]_LT_AC_TAGVAR(compiler, $1)
 # Is the compiler the GNU C compiler?
 with_gcc=$_LT_AC_TAGVAR(GCC, $1)

-gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\`
-gcc_ver=\`gcc -dumpversion\`
-
 # An ERE matcher.
 EGREP=$lt_EGREP

@@ -4441,11 +4421,11 @@ striplib=$lt_striplib

 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=\`echo $lt_[]_LT_AC_TAGVAR(predep_objects, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+predep_objects=$lt_[]_LT_AC_TAGVAR(predep_objects, $1)

 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=\`echo $lt_[]_LT_AC_TAGVAR(postdep_objects, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+postdep_objects=$lt_[]_LT_AC_TAGVAR(postdep_objects, $1)

 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -4457,7 +4437,7 @@ postdeps=$lt_[]_LT_AC_TAGVAR(postdeps, $1)

 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=\`echo $lt_[]_LT_AC_TAGVAR(compiler_lib_search_path, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+compiler_lib_search_path=$lt_[]_LT_AC_TAGVAR(compiler_lib_search_path, $1)

 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method=$lt_deplibs_check_method
@@ -4537,7 +4517,7 @@ variables_saved_for_relink="$variables_saved_for_relink"
 link_all_deplibs=$_LT_AC_TAGVAR(link_all_deplibs, $1)

 # Compile-time system search path for libraries
-sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+sys_lib_search_path_spec=$lt_sys_lib_search_path_spec

 # Run-time system search path for libraries
 sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
@@ -6373,7 +6353,6 @@ do
    done
  done
 done
-IFS=$as_save_IFS
 lt_ac_max=0
 lt_ac_count=0
 # Add /usr/xpg4/bin/sed as it is typically found on Solaris
@@ -6406,7 +6385,6 @@ for lt_ac_sed in $lt_ac_sed_list /usr/xpg4/bin/sed; do
 done
 ])
 SED=$lt_cv_path_SED
-AC_SUBST([SED])
 AC_MSG_RESULT([$SED])
 ])


--- a/AMDiS/configure
+++ b/AMDiS/configure
@@ -462,7 +462,7 @@ ac_includes_default="\
 # include <unistd.h>
 #endif"
  
-ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA CYGPATH_W PACKAGE VERSION ACLOCAL AUTOCONF AUTOMAKE AUTOHEADER MAKEINFO install_sh STRIP ac_ct_STRIP INSTALL_STRIP_PROGRAM mkdir_p AWK SET_MAKE am__leading_dot AMTAR am__tar am__untar MAINTAINER_MODE_TRUE MAINTAINER_MODE_FALSE MAINT AMDIS_DEBUG_TRUE AMDIS_DEBUG_FALSE CXX CC AMDIS_INTEL_TRUE AMDIS_INTEL_FALSE AMDIS_OPENMP_TRUE AMDIS_OPENMP_FALSE OPENMP_FLAG MPI_DIR PETSC_DIR USE_PARALLEL_AMDIS_TRUE USE_PARALLEL_AMDIS_FALSE USE_PARALLEL_DOMAIN_AMDIS_TRUE USE_PARALLEL_DOMAIN_AMDIS_FALSE ENABLE_ZOLTAN_TRUE ENABLE_ZOLTAN_FALSE ENABLE_UMFPACK_TRUE ENABLE_UMFPACK_FALSE ENABLE_MKL_TRUE ENABLE_MKL_FALSE DUNE_DIR ENABLE_DUNE_TRUE ENABLE_DUNE_FALSE ENABLE_BOOST_TRUE ENABLE_BOOST_FALSE CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT DEPDIR am__include am__quote AMDEP_TRUE AMDEP_FALSE AMDEPBACKSLASH CCDEPMODE am__fastdepCC_TRUE am__fastdepCC_FALSE CXXFLAGS ac_ct_CXX CXXDEPMODE am__fastdepCXX_TRUE am__fastdepCXX_FALSE build build_cpu build_vendor build_os host host_cpu host_vendor host_os SED EGREP LN_S ECHO AR ac_ct_AR RANLIB ac_ct_RANLIB CPP CXXCPP F77 FFLAGS ac_ct_F77 LIBTOOL LIBOBJS LTLIBOBJS'
+ac_subst_vars='SHELL PATH_SEPARATOR PACKAGE_NAME PACKAGE_TARNAME PACKAGE_VERSION PACKAGE_STRING PACKAGE_BUGREPORT exec_prefix prefix program_transform_name bindir sbindir libexecdir datadir sysconfdir sharedstatedir localstatedir libdir includedir oldincludedir infodir mandir build_alias host_alias target_alias DEFS ECHO_C ECHO_N ECHO_T LIBS INSTALL_PROGRAM INSTALL_SCRIPT INSTALL_DATA CYGPATH_W PACKAGE VERSION ACLOCAL AUTOCONF AUTOMAKE AUTOHEADER MAKEINFO install_sh STRIP ac_ct_STRIP INSTALL_STRIP_PROGRAM mkdir_p AWK SET_MAKE am__leading_dot AMTAR am__tar am__untar MAINTAINER_MODE_TRUE MAINTAINER_MODE_FALSE MAINT AMDIS_DEBUG_TRUE AMDIS_DEBUG_FALSE CXX CC AMDIS_INTEL_TRUE AMDIS_INTEL_FALSE AMDIS_OPENMP_TRUE AMDIS_OPENMP_FALSE OPENMP_FLAG MPI_DIR PETSC_DIR USE_PARALLEL_AMDIS_TRUE USE_PARALLEL_AMDIS_FALSE USE_PARALLEL_DOMAIN_AMDIS_TRUE USE_PARALLEL_DOMAIN_AMDIS_FALSE ENABLE_ZOLTAN_TRUE ENABLE_ZOLTAN_FALSE ENABLE_UMFPACK_TRUE ENABLE_UMFPACK_FALSE ENABLE_MKL_TRUE ENABLE_MKL_FALSE DUNE_DIR ENABLE_DUNE_TRUE ENABLE_DUNE_FALSE ENABLE_BOOST_TRUE ENABLE_BOOST_FALSE CFLAGS LDFLAGS CPPFLAGS ac_ct_CC EXEEXT OBJEXT DEPDIR am__include am__quote AMDEP_TRUE AMDEP_FALSE AMDEPBACKSLASH CCDEPMODE am__fastdepCC_TRUE am__fastdepCC_FALSE CXXFLAGS ac_ct_CXX CXXDEPMODE am__fastdepCXX_TRUE am__fastdepCXX_FALSE build build_cpu build_vendor build_os host host_cpu host_vendor host_os EGREP LN_S ECHO AR ac_ct_AR RANLIB ac_ct_RANLIB CPP CXXCPP F77 FFLAGS ac_ct_F77 LIBTOOL LIBOBJS LTLIBOBJS'
 ac_subst_files=''
  
 # Initialize some variables set by options.
@@ -3977,7 +3977,6 @@ do
    done
  done
 done
-IFS=$as_save_IFS
 lt_ac_max=0
 lt_ac_count=0
 # Add /usr/xpg4/bin/sed as it is typically found on Solaris
@@ -4012,7 +4011,6 @@ done
 fi
  
 SED=$lt_cv_path_SED
-
 echo "$as_me:$LINENO: result: $SED" >&5
 echo "${ECHO_T}$SED" >&6
  
@@ -4453,7 +4451,7 @@ ia64-*-hpux*)
  ;;
 *-*-irix6*)
  # Find out which ABI we are using.
-  echo '#line 4456 "configure"' > conftest.$ac_ext
+  echo '#line 4454 "configure"' > conftest.$ac_ext
  if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
  (eval $ac_compile) 2>&5
  ac_status=$?
@@ -5588,7 +5586,7 @@ fi
  
  
 # Provide some information about the compiler.
-echo "$as_me:5591:" \
+echo "$as_me:5589:" \
     "checking for Fortran 77 compiler version" >&5
 ac_compiler=`set X $ac_compile; echo $2`
 { (eval echo "$as_me:$LINENO: \"$ac_compiler --version </dev/null >&5\"") >&5
@@ -6651,11 +6649,11 @@ else
   -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
   -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
   -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:6654: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:6652: $lt_compile\"" >&5)
   (eval "$lt_compile" 2>conftest.err)
   ac_status=$?
   cat conftest.err >&5
-   echo "$as_me:6658: \$? = $ac_status" >&5
+   echo "$as_me:6656: \$? = $ac_status" >&5
   if (exit $ac_status) && test -s "$ac_outfile"; then
     # The compiler can only warn and ignore the option if not recognized
     # So say no if there are warnings other than the usual output.
@@ -6919,11 +6917,11 @@ else
   -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
   -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
   -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:6922: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:6920: $lt_compile\"" >&5)
   (eval "$lt_compile" 2>conftest.err)
   ac_status=$?
   cat conftest.err >&5
-   echo "$as_me:6926: \$? = $ac_status" >&5
+   echo "$as_me:6924: \$? = $ac_status" >&5
   if (exit $ac_status) && test -s "$ac_outfile"; then
     # The compiler can only warn and ignore the option if not recognized
     # So say no if there are warnings other than the usual output.
@@ -7023,11 +7021,11 @@ else
   -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
   -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
   -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:7026: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:7024: $lt_compile\"" >&5)
   (eval "$lt_compile" 2>out/conftest.err)
   ac_status=$?
   cat out/conftest.err >&5
-   echo "$as_me:7030: \$? = $ac_status" >&5
+   echo "$as_me:7028: \$? = $ac_status" >&5
   if (exit $ac_status) && test -s out/conftest2.$ac_objext
   then
     # The compiler can only warn and ignore the option if not recognized
@@ -8488,31 +8486,10 @@ linux*)
  # before this can be enabled.
  hardcode_into_libs=yes
  
-  # find out which ABI we are using
-  libsuff=
-  case "$host_cpu" in
-  x86_64*|s390x*|powerpc64*)
-    echo '#line 8495 "configure"' > conftest.$ac_ext
-    if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; then
-      case `/usr/bin/file conftest.$ac_objext` in
-      *64-bit*)
-        libsuff=64
-        sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}"
-        ;;
-      esac
-    fi
-    rm -rf conftest*
-    ;;
-  esac
-
  # Append ld.so.conf contents to the search path
  if test -f /etc/ld.so.conf; then
-    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
-    sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra"
+    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
+    sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
  fi
  
  # We used to test for /lib/ld.so.1 and disable shared libraries on
@@ -9389,7 +9366,7 @@ else
  lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2
  lt_status=$lt_dlunknown
  cat > conftest.$ac_ext <<EOF
-#line 9392 "configure"
+#line 9369 "configure"
 #include "confdefs.h"
  
 #if HAVE_DLFCN_H
@@ -9489,7 +9466,7 @@ else
  lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2
  lt_status=$lt_dlunknown
  cat > conftest.$ac_ext <<EOF
-#line 9492 "configure"
+#line 9469 "configure"
 #include "confdefs.h"
  
 #if HAVE_DLFCN_H
@@ -9820,9 +9797,6 @@ CC=$lt_compiler
 # Is the compiler the GNU C compiler?
 with_gcc=$GCC
  
-gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\`
-gcc_ver=\`gcc -dumpversion\`
-
 # An ERE matcher.
 EGREP=$lt_EGREP
  
@@ -9956,11 +9930,11 @@ striplib=$lt_striplib
  
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=\`echo $lt_predep_objects | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+predep_objects=$lt_predep_objects
  
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=\`echo $lt_postdep_objects | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+postdep_objects=$lt_postdep_objects
  
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -9972,7 +9946,7 @@ postdeps=$lt_postdeps
  
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=\`echo $lt_compiler_lib_search_path | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+compiler_lib_search_path=$lt_compiler_lib_search_path
  
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method=$lt_deplibs_check_method
@@ -10052,7 +10026,7 @@ variables_saved_for_relink="$variables_saved_for_relink"
 link_all_deplibs=$link_all_deplibs
  
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
  
 # Run-time system search path for libraries
 sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
@@ -11832,11 +11806,11 @@ else
   -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
   -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
   -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:11835: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:11809: $lt_compile\"" >&5)
   (eval "$lt_compile" 2>conftest.err)
   ac_status=$?
   cat conftest.err >&5
-   echo "$as_me:11839: \$? = $ac_status" >&5
+   echo "$as_me:11813: \$? = $ac_status" >&5
   if (exit $ac_status) && test -s "$ac_outfile"; then
     # The compiler can only warn and ignore the option if not recognized
     # So say no if there are warnings other than the usual output.
@@ -11936,11 +11910,11 @@ else
   -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
   -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
   -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:11939: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:11913: $lt_compile\"" >&5)
   (eval "$lt_compile" 2>out/conftest.err)
   ac_status=$?
   cat out/conftest.err >&5
-   echo "$as_me:11943: \$? = $ac_status" >&5
+   echo "$as_me:11917: \$? = $ac_status" >&5
   if (exit $ac_status) && test -s out/conftest2.$ac_objext
   then
     # The compiler can only warn and ignore the option if not recognized
@@ -12468,31 +12442,10 @@ linux*)
  # before this can be enabled.
  hardcode_into_libs=yes
  
-  # find out which ABI we are using
-  libsuff=
-  case "$host_cpu" in
-  x86_64*|s390x*|powerpc64*)
-    echo '#line 12475 "configure"' > conftest.$ac_ext
-    if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; then
-      case `/usr/bin/file conftest.$ac_objext` in
-      *64-bit*)
-        libsuff=64
-        sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}"
-        ;;
-      esac
-    fi
-    rm -rf conftest*
-    ;;
-  esac
-
  # Append ld.so.conf contents to the search path
  if test -f /etc/ld.so.conf; then
-    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
-    sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra"
+    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
+    sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
  fi
  
  # We used to test for /lib/ld.so.1 and disable shared libraries on
@@ -12876,9 +12829,6 @@ CC=$lt_compiler_CXX
 # Is the compiler the GNU C compiler?
 with_gcc=$GCC_CXX
  
-gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\`
-gcc_ver=\`gcc -dumpversion\`
-
 # An ERE matcher.
 EGREP=$lt_EGREP
  
@@ -13012,11 +12962,11 @@ striplib=$lt_striplib
  
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=\`echo $lt_predep_objects_CXX | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+predep_objects=$lt_predep_objects_CXX
  
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=\`echo $lt_postdep_objects_CXX | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+postdep_objects=$lt_postdep_objects_CXX
  
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -13028,7 +12978,7 @@ postdeps=$lt_postdeps_CXX
  
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=\`echo $lt_compiler_lib_search_path_CXX | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+compiler_lib_search_path=$lt_compiler_lib_search_path_CXX
  
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method=$lt_deplibs_check_method
@@ -13108,7 +13058,7 @@ variables_saved_for_relink="$variables_saved_for_relink"
 link_all_deplibs=$link_all_deplibs_CXX
  
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
  
 # Run-time system search path for libraries
 sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
@@ -13530,11 +13480,11 @@ else
   -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
   -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
   -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:13533: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:13483: $lt_compile\"" >&5)
   (eval "$lt_compile" 2>conftest.err)
   ac_status=$?
   cat conftest.err >&5
-   echo "$as_me:13537: \$? = $ac_status" >&5
+   echo "$as_me:13487: \$? = $ac_status" >&5
   if (exit $ac_status) && test -s "$ac_outfile"; then
     # The compiler can only warn and ignore the option if not recognized
     # So say no if there are warnings other than the usual output.
@@ -13634,11 +13584,11 @@ else
   -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
   -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
   -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:13637: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:13587: $lt_compile\"" >&5)
   (eval "$lt_compile" 2>out/conftest.err)
   ac_status=$?
   cat out/conftest.err >&5
-   echo "$as_me:13641: \$? = $ac_status" >&5
+   echo "$as_me:13591: \$? = $ac_status" >&5
   if (exit $ac_status) && test -s out/conftest2.$ac_objext
   then
     # The compiler can only warn and ignore the option if not recognized
@@ -15079,31 +15029,10 @@ linux*)
  # before this can be enabled.
  hardcode_into_libs=yes
  
-  # find out which ABI we are using
-  libsuff=
-  case "$host_cpu" in
-  x86_64*|s390x*|powerpc64*)
-    echo '#line 15086 "configure"' > conftest.$ac_ext
-    if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; then
-      case `/usr/bin/file conftest.$ac_objext` in
-      *64-bit*)
-        libsuff=64
-        sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}"
-        ;;
-      esac
-    fi
-    rm -rf conftest*
-    ;;
-  esac
-
  # Append ld.so.conf contents to the search path
  if test -f /etc/ld.so.conf; then
-    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
-    sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra"
+    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
+    sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
  fi
  
  # We used to test for /lib/ld.so.1 and disable shared libraries on
@@ -15487,9 +15416,6 @@ CC=$lt_compiler_F77
 # Is the compiler the GNU C compiler?
 with_gcc=$GCC_F77
  
-gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\`
-gcc_ver=\`gcc -dumpversion\`
-
 # An ERE matcher.
 EGREP=$lt_EGREP
  
@@ -15623,11 +15549,11 @@ striplib=$lt_striplib
  
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=\`echo $lt_predep_objects_F77 | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+predep_objects=$lt_predep_objects_F77
  
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=\`echo $lt_postdep_objects_F77 | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+postdep_objects=$lt_postdep_objects_F77
  
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -15639,7 +15565,7 @@ postdeps=$lt_postdeps_F77
  
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=\`echo $lt_compiler_lib_search_path_F77 | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+compiler_lib_search_path=$lt_compiler_lib_search_path_F77
  
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method=$lt_deplibs_check_method
@@ -15719,7 +15645,7 @@ variables_saved_for_relink="$variables_saved_for_relink"
 link_all_deplibs=$link_all_deplibs_F77
  
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
  
 # Run-time system search path for libraries
 sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
@@ -15861,11 +15787,11 @@ else
   -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
   -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
   -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:15864: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:15790: $lt_compile\"" >&5)
   (eval "$lt_compile" 2>conftest.err)
   ac_status=$?
   cat conftest.err >&5
-   echo "$as_me:15868: \$? = $ac_status" >&5
+   echo "$as_me:15794: \$? = $ac_status" >&5
   if (exit $ac_status) && test -s "$ac_outfile"; then
     # The compiler can only warn and ignore the option if not recognized
     # So say no if there are warnings other than the usual output.
@@ -16129,11 +16055,11 @@ else
   -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
   -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
   -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:16132: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:16058: $lt_compile\"" >&5)
   (eval "$lt_compile" 2>conftest.err)
   ac_status=$?
   cat conftest.err >&5
-   echo "$as_me:16136: \$? = $ac_status" >&5
+   echo "$as_me:16062: \$? = $ac_status" >&5
   if (exit $ac_status) && test -s "$ac_outfile"; then
     # The compiler can only warn and ignore the option if not recognized
     # So say no if there are warnings other than the usual output.
@@ -16233,11 +16159,11 @@ else
   -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
   -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
   -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:16236: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:16162: $lt_compile\"" >&5)
   (eval "$lt_compile" 2>out/conftest.err)
   ac_status=$?
   cat out/conftest.err >&5
-   echo "$as_me:16240: \$? = $ac_status" >&5
+   echo "$as_me:16166: \$? = $ac_status" >&5
   if (exit $ac_status) && test -s out/conftest2.$ac_objext
   then
     # The compiler can only warn and ignore the option if not recognized
@@ -17698,31 +17624,10 @@ linux*)
  # before this can be enabled.
  hardcode_into_libs=yes
  
-  # find out which ABI we are using
-  libsuff=
-  case "$host_cpu" in
-  x86_64*|s390x*|powerpc64*)
-    echo '#line 17705 "configure"' > conftest.$ac_ext
-    if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
-  (eval $ac_compile) 2>&5
-  ac_status=$?
-  echo "$as_me:$LINENO: \$? = $ac_status" >&5
-  (exit $ac_status); }; then
-      case `/usr/bin/file conftest.$ac_objext` in
-      *64-bit*)
-        libsuff=64
-        sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}"
-        ;;
-      esac
-    fi
-    rm -rf conftest*
-    ;;
-  esac
-
  # Append ld.so.conf contents to the search path
  if test -f /etc/ld.so.conf; then
-    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
-    sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra"
+    lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:,	]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
+    sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
  fi
  
  # We used to test for /lib/ld.so.1 and disable shared libraries on
@@ -18106,9 +18011,6 @@ CC=$lt_compiler_GCJ
 # Is the compiler the GNU C compiler?
 with_gcc=$GCC_GCJ
  
-gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\`
-gcc_ver=\`gcc -dumpversion\`
-
 # An ERE matcher.
 EGREP=$lt_EGREP
  
@@ -18242,11 +18144,11 @@ striplib=$lt_striplib
  
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=\`echo $lt_predep_objects_GCJ | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+predep_objects=$lt_predep_objects_GCJ
  
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=\`echo $lt_postdep_objects_GCJ | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+postdep_objects=$lt_postdep_objects_GCJ
  
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -18258,7 +18160,7 @@ postdeps=$lt_postdeps_GCJ
  
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=\`echo $lt_compiler_lib_search_path_GCJ | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+compiler_lib_search_path=$lt_compiler_lib_search_path_GCJ
  
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method=$lt_deplibs_check_method
@@ -18338,7 +18240,7 @@ variables_saved_for_relink="$variables_saved_for_relink"
 link_all_deplibs=$link_all_deplibs_GCJ
  
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
  
 # Run-time system search path for libraries
 sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
@@ -18590,9 +18492,6 @@ CC=$lt_compiler_RC
 # Is the compiler the GNU C compiler?
 with_gcc=$GCC_RC
  
-gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\`
-gcc_ver=\`gcc -dumpversion\`
-
 # An ERE matcher.
 EGREP=$lt_EGREP
  
@@ -18726,11 +18625,11 @@ striplib=$lt_striplib
  
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects=\`echo $lt_predep_objects_RC | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+predep_objects=$lt_predep_objects_RC
  
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects=\`echo $lt_postdep_objects_RC | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+postdep_objects=$lt_postdep_objects_RC
  
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -18742,7 +18641,7 @@ postdeps=$lt_postdeps_RC
  
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path=\`echo $lt_compiler_lib_search_path_RC | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+compiler_lib_search_path=$lt_compiler_lib_search_path_RC
  
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method=$lt_deplibs_check_method
@@ -18822,7 +18721,7 @@ variables_saved_for_relink="$variables_saved_for_relink"
 link_all_deplibs=$link_all_deplibs_RC
  
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
+sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
  
 # Run-time system search path for libraries
 sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
@@ -19755,7 +19654,6 @@ s,@host@,$host,;t t
 s,@host_cpu@,$host_cpu,;t t
 s,@host_vendor@,$host_vendor,;t t
 s,@host_os@,$host_os,;t t
-s,@SED@,$SED,;t t
 s,@EGREP@,$EGREP,;t t
 s,@LN_S@,$LN_S,;t t
 s,@ECHO@,$ECHO,;t t

--- a/AMDiS/libtool
+++ b/AMDiS/libtool
@@ -30,10 +30,10 @@
 # the same distribution terms that you use for the rest of that program.

 # A sed program that does not truncate output.
-SED="/bin/sed"
+SED="/usr/bin/sed"

 # Sed that helps us avoid accidentally triggering echo(1) options like -n.
-Xsed="/bin/sed -e 1s/^X//"
+Xsed="/usr/bin/sed -e 1s/^X//"

 # The HP-UX ksh and POSIX shell print the target directory to stdout
 # if CDPATH is set.
@@ -44,7 +44,7 @@ available_tags=" CXX F77"

 # ### BEGIN LIBTOOL CONFIG

-# Libtool was configured on host NWRW15:
+# Libtool was configured on host deimos103:

 # Shell to use when invoking shell scripts.
 SHELL="/bin/sh"
@@ -66,12 +66,12 @@ fast_install=yes

 # The host system.
 host_alias=