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amdis
Commit a9897bbf authored by Thomas Witkowski's avatar Thomas Witkowski
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* And now, real code to write pngs!

parent c8ee0e76
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Showing with 184 additions and 195 deletions
AMDiS/src/BasisFunction.h
View file @ a9897bbf
......@@ -362,9 +362,7 @@ namespace AMDiS {
virtual void coarseRestr(DOFVector<WorldVector<double> >*, RCNeighbourList*, int)
{}
/** \brief
* Returns local dof indices of the element for the given fe space.
*/
/// Returns local dof indices of the element for the given fe space.
virtual const DegreeOfFreedom *getLocalIndices(const Element*,
const DOFAdmin*,
DegreeOfFreedom*) const
......@@ -372,9 +370,7 @@ namespace AMDiS {
return NULL;
}
/** \brief
* Returns local dof indices of the element for the given fe space.
*/
/// Returns local dof indices of the element for the given fe space.
virtual void getLocalIndicesVec(const Element*,
const DOFAdmin*,
Vector<DegreeOfFreedom>*) const
......
AMDiS/src/DOFMatrix.cc
View file @ a9897bbf
#include "DOFMatrix.h"
#include <algorithm>
#include <png.h>
#include "DOFMatrix.h"
#include "QPsiPhi.h"
#include "BasisFunction.h"
#include "Boundary.h"
......@@ -754,7 +755,8 @@ namespace AMDiS {
void DOFMatrix::createPictureFile(const char* filename, int dim)
{
png_structp png_ptr = png_create_write_struct(PNG_LIBPNG_VER_STRING, NULL, NULL, NULL);
png_structp png_ptr = png_create_write_struct(PNG_LIBPNG_VER_STRING,
NULL, NULL, NULL);
if (!png_ptr)
return;
......@@ -763,9 +765,8 @@ namespace AMDiS {
for (int i = 0; i < dim; i++) {
rowPointers[i] = (png_byte*)png_malloc(png_ptr, dim);
for (int j = 0; j < dim; j++) {
for (int j = 0; j < dim; j++)
rowPointers[i][j] = 255;
}
}
double scalFactor = static_cast<double>(dim) / static_cast<double>(matrix.size());
......
AMDiS/src/DataCollector.h
View file @ a9897bbf
......@@ -42,17 +42,14 @@ namespace AMDiS {
* \ingroup Output
*
* \brief
* Provides data collecting of element, vertex and value data
* for file writers.
* Provides data collecting of element, vertex and value data for file writer.
*/
class DataCollector
{
public:
MEMORY_MANAGED(DataCollector);
/** \brief
* Constructor.
*/
/// Constructor
DataCollector(const FiniteElemSpace *feSpace,
DOFVector<double> *values,
int level = -1,
......@@ -61,156 +58,96 @@ namespace AMDiS {
~DataCollector();
/** \brief
* Fills the DataCollector with all possible datas.
*/
/// Fills the DataCollector with all possible datas.
void fillAllData();
/** \brief
* Returns list with element information.
*/
/// Returns list with element information.
std::list<ElementInfo>* getElementInfos();
/** \brief
* Returns vector with vertex information.
*/
/// Returns vector with vertex information.
DOFVector< std::list<VertexInfo> >* getVertexInfos();
/** \brief
* Returns the finite element space of the problem.
*/
/// Returns the finite element space of the problem.
const FiniteElemSpace* getFeSpace();
/** \brief
* Returns vector with value information.
*/
/// Returns vector with value information.
DOFVector<double>* getValues();
/** \brief
* Returns vector with information about dof coordinates.
*/
/// Returns vector with information about dof coordinates.
DOFVector< std::list<WorldVector<double> > >* getDofCoords();
/** \brief
* Returns vector with information about interpolation
* point indexing.
*/
/// Returns vector with information about interpolation point indexing.
DOFVector<int>* getInterpPointInd();
/** \brief
*
*/
///
DOFVector< std::list<WorldVector<double> > >* getInterpPointCoords();
/** \brief
* Returns list of interpolation point information.
*/
/// Returns list of interpolation point information.
std::vector< std::vector<int> >* getInterpPoints();
/** \brief
* Returns list of information about periodics.
*/
/// Returns list of information about periodics.
std::list<PeriodicInfo>* getPeriodicInfos();
/** \brief
* Returns the number of vertices.
*/
/// Returns the number of vertices.
int getNumberVertices();
/** \brief
* Returns the number of elements.
*/
/// Returns the number of elements.
int getNumberElements();
/** \brief
* Returns the number of interpolation points.
*/
/// Returns the number of interpolation points.
int getNumberInterpPoints();
/** \brief
* Returns the number of connections.
*/
// Returns the number of connections.
int getNumberConnections();
/** \brief
* Returns the mesh of the problem.
*/
/// Returns the mesh of the problem.
Mesh* getMesh();
void setMesh(Mesh *mesh) {
mesh_ = mesh;
};
}
protected:
/** \brief
* Start collecting element and vertex data of the problem.
*/
/// Start collecting element and vertex data of the problem.
int startCollectingElementData();
/** \brief
* Start collecting value data of the problem.
*/
/// Start collecting value data of the problem.
int startCollectingValueData();
/** \brief
* Start collecting periodic data of the problem.
*/
/// Start collecting periodic data of the problem.
int startCollectingPeriodicData();
/** \brief
* Adds information about one element and its vertices.
*/
/// Adds information about one element and its vertices.
int addElementData(ElInfo* elInfo);
/** \brief
* Adds value information of one element.
*/
/// Adds value information of one element.
int addValueData(ElInfo *elInfo);
/** \brief
* Adds information about interpolation points of vertices.
*/
/// Adds information about interpolation points of vertices.
int addInterpData(ElInfo *elInfo);
/** \brief
* Adds value information of one element.
*/
/// Adds value information of one element.
int addPeriodicData(ElInfo *elInfo);
/** \brief
* Vector with vertex values
*/
/// Vector with vertex values
DOFVector<double> *values_;
/** \brief
* Level information for traversing the mesh.
*/
/// Level information for traversing the mesh.
int level_;
/** \brief
* Flags for traversing the mesh.
*/
/// Flags for traversing the mesh.
Flag traverseFlag_;
/** \brief
*
*/
///
const FiniteElemSpace *feSpace_;
/** \brief
* Mesh that should be written
*/
/// Mesh that should be written
Mesh *mesh_;
/** \brief
* DOFAdmin of values
*/
/// DOFAdmin of values
DOFAdmin *localAdmin_;
/** \brief
* vertex pre-dofs
*/
/// vertex pre-dofs
int nPreDofs_;
/// Number of vertices.
......
AMDiS/src/ElInfo.h
View file @ a9897bbf
......@@ -101,57 +101,42 @@ namespace AMDiS {
return *this;
}
// ===== getting-methods ======================================================
public:
/** \name getting methods
* \{
*/
/** \brief
* Get ElInfo's \ref mesh_
*/
/// Get ElInfo's \ref mesh_
inline Mesh* getMesh() const {
return mesh_;
}
/** \brief
* Get ElInfo's \ref macroElement_
*/
/// Get ElInfo's \ref macroElement_
inline MacroElement* getMacroElement() const {
return macroElement_;
}
/** \brief
* Get ElInfo's \ref element
*/
/// Get ElInfo's \ref element
inline Element* getElement() const {
return element_;
}
/** \brief
* Get ElInfo's \ref parent_
*/
/// Get ElInfo's \ref parent_
inline Element* getParent() const {
return parent_;
}
/** \brief
* Get ElInfo's \ref fillFlag_
*/
/// Get ElInfo's \ref fillFlag_
inline Flag getFillFlag() const {
return fillFlag_;
}
/** \brief
* Get ElInfo's \ref level
*/
/// Get ElInfo's \ref level
inline int getLevel() const {
return level;
}
/** \brief
* Get ElInfo's \ref iChild
*/
/// Get ElInfo's \ref iChild
inline int getIChild() const {
return iChild;
}
......@@ -188,12 +173,10 @@ namespace AMDiS {
return coord_;
}
/** \brief
* Get ElInfo's \ref oppCoord_[i]
*/
/// Get ElInfo's \ref oppCoord_[i]
inline WorldVector<double>& getOppCoord(int i) {
return oppCoord_[i];
};
}
/** \brief
* Get ElInfo's \ref boundary_[i]
......@@ -466,20 +449,13 @@ namespace AMDiS {
int iChild) const = 0;
protected:
/** \brief
* Pointer to the current mesh
*/
/// Pointer to the current mesh
Mesh *mesh_;
/** \brief
* Pointer to the current element
*/
/// Pointer to the current element
Element *element_;
/** \brief
* \ref element is child of element parent_
*/
/// \ref element is child of element parent_
Element *parent_;
/** \brief
......
AMDiS/src/ElementMatrix.h
View file @ a9897bbf
......@@ -27,10 +27,6 @@
namespace AMDiS {
// =============================================================================
// ===== class ElementMatrix ===================================================
// =============================================================================
/** \ingroup Assembler
*
* \brief
......@@ -42,24 +38,18 @@ namespace AMDiS {
public:
MEMORY_MANAGED(ElementMatrix);
/** \brief
* Constructor.
*/
/// Constructor
ElementMatrix(int numRows, int numCols)
: Matrix<double>(numRows, numCols),
rowIndices(numRows),
colIndices(numCols)
{};
{}
public:
/** \brief
* row dof indices.
*/
/// Row dof indices.
Vector<DegreeOfFreedom> rowIndices;
/** \brief
* column dof indices.
*/
/// Column dof indices.
Vector<DegreeOfFreedom> colIndices;
};
......
AMDiS/src/FileWriter.cc
View file @ a9897bbf
......@@ -108,6 +108,7 @@ namespace AMDiS {
writeParaViewAnimation = 0;
writePeriodicFormat = 0;
writePngFormat = 0;
pngType = 0;
appendIndex = 0;
indexLength = 5;
indexDecimals = 3;
......@@ -135,6 +136,7 @@ namespace AMDiS {
GET_PARAMETER(0, name + "->Periodic format", "%d", &writePeriodicFormat);
GET_PARAMETER(0, name + "->Periodic ext", &periodicFileExt);
GET_PARAMETER(0, name + "->PNG format", "%d", &writePngFormat);
GET_PARAMETER(0, name + "->PNG type", "%d", &pngType);
GET_PARAMETER(0, name + "->append index", "%d", &appendIndex);
GET_PARAMETER(0, name + "->index length", "%d", &indexLength);
GET_PARAMETER(0, name + "->index decimals", "%d", &indexDecimals);
......@@ -233,14 +235,14 @@ namespace AMDiS {
VtkWriter vtkWriter(&dataCollectors);
vtkWriter.updateAnimationFile(fn + paraViewFileExt,
&paraViewAnimationFrames_,
const_cast<char*>((filename + ".pvd").c_str()));
filename + ".pvd");
}
if (writePngFormat) {
PngWriter pngWriter(dataCollectors[0]);
pngWriter.writeFile(const_cast<char*>((fn + paraViewFileExt).c_str()));
pngWriter.writeFile(fn + ".png", pngType);
MSG("PNG image file written to %s\n", (fn + paraViewFileExt).c_str());
MSG("PNG image file written to %s\n", (fn + ".png").c_str());
}
......
AMDiS/src/FileWriter.h
View file @ a9897bbf
......@@ -184,6 +184,9 @@ namespace AMDiS {
/// 0: Don't write png files; 1: Write png image files.
int writePngFormat;
/// 0: Gray color picture; 1: RGB picture.
int pngType;
/** \brief
* 0: Don't append time index to filename prefix.
* 1: Append time index to filename prefix.
......
AMDiS/src/FiniteElemSpace.h
View file @ a9897bbf
......@@ -32,10 +32,6 @@
namespace AMDiS {
// ============================================================================
// ===== forward declarations =================================================
// ============================================================================
class DOFAdmin;
class BasisFunction;
class Mesh;
......@@ -43,29 +39,19 @@ namespace AMDiS {
template<typename T> class DOFVector;
template<typename T> class DimVec;
// ============================================================================
// ===== class FiniteElemSpace ================================================
// ============================================================================
/** \ingroup FEMSpace
* \brief
* A FiniteElemSpace is a triple of a DOFAdmin and a set of BasisFunction on a
* Mesh.
* A FiniteElemSpace is a triple of a DOFAdmin and a set of BasisFunction on a mesh.
*/
class FiniteElemSpace
{
public:
MEMORY_MANAGED(FiniteElemSpace);
/** \brief
* Create an empty fe space.
*/
/// Create an empty fe space.
FiniteElemSpace();
/** \brief
*
*/
///
static FiniteElemSpace *provideFESpace(DOFAdmin *admin,
const BasisFunction *basFcts,
Mesh *mesh,
......@@ -116,29 +102,19 @@ namespace AMDiS {
const std::string& name = "");
protected:
/** \brief
* Name of this FiniteElemSpace
*/
/// Name of this FiniteElemSpace.
const std::string name;
/** \brief
* DOFAdmin corresponding to this FiniteElemSpace
*/
/// DOFAdmin corresponding to this FiniteElemSpace.
DOFAdmin* admin;
/** \brief
* set of BasisFunction of this FiniteElemSpace
*/
/// Set of BasisFunction of this FiniteElemSpace.
const BasisFunction* basFcts;
/** \brief
* The Mesh this FiniteElemSpace belongs to
*/
/// The Mesh this FiniteElemSpace belongs to.
Mesh* mesh;
/** \brief
*
*/
///
static std::vector<FiniteElemSpace*> feSpaces;
};
......
AMDiS/src/PngWriter.cc
View file @ a9897bbf
#include <float.h>
#include <png.h>
#include "PngWriter.h"
#include "Traverse.h"
#include "DOFVector.h"
namespace AMDiS {
int PngWriter::writeFile(const std::string name)
int PngWriter::writeFile(const std::string filename, int imageType)
{
FUNCNAME("PngWriter::writeFile()");
double minX = DBL_MAX, minY = DBL_MAX;
double maxX = DBL_MIN, maxY = DBL_MIN;
TraverseStack stack;
ElInfo *elInfo = stack.traverseFirst(dataCollector->getMesh(), -1,
Mesh::CALL_LEAF_EL | Mesh::FILL_COORDS);
double pointdist = min(absteukl(elInfo->getCoord(0), elInfo->getCoord(1)),
min(absteukl(elInfo->getCoord(1), elInfo->getCoord(2)),
absteukl(elInfo->getCoord(2), elInfo->getCoord(0))));
while (elInfo) {
for (int i = 0; i < 3; i++) {
double x = (elInfo->getCoord(i))[0];
double y = (elInfo->getCoord(i))[1];
if (x < minX) minX = x;
if (x > maxX) maxX = x;
if (y < minY) minY = y;
if (y > maxY) maxY = y;
}
elInfo = stack.traverseNext(elInfo);
}
TEST_EXIT(minX == 0.0 && minY == 0.0)("Only supported for minX = minY = 0.0!\n");
TEST_EXIT(pointdist > 0.0)("This should not happen!\n");
int imageX = static_cast<int>(maxX / pointdist) + 1;
int imageY = static_cast<int>(maxY / pointdist) + 1;
png_structp png_ptr = png_create_write_struct(PNG_LIBPNG_VER_STRING,
NULL, NULL, NULL);
if (!png_ptr)
return 0;
png_bytep rowPointers[imageY];
for (int i = 0; i < imageY; i++) {
rowPointers[i] = (png_byte*)png_malloc(png_ptr,
(imageType == 0 ? imageX : imageX * 3));
}
const BasisFunction* basisFcts = dataCollector->getFeSpace()->getBasisFcts();
Vector<DegreeOfFreedom> localDofs(3);
DOFVector<double>* dofvalues = dataCollector->getValues();
elInfo = stack.traverseFirst(dataCollector->getMesh(), -1,
Mesh::CALL_LEAF_EL | Mesh::FILL_COORDS);
while (elInfo) {
basisFcts->getLocalIndicesVec(elInfo->getElement(),
dataCollector->getFeSpace()->getAdmin(),
&localDofs);
for (int i = 0; i < 3; i++) {
if (imageType == 0) {
int indexX = static_cast<int>((elInfo->getCoord(i))[0] / pointdist);
int indexY = static_cast<int>((elInfo->getCoord(i))[1] / pointdist);
rowPointers[indexY][indexX] =
static_cast<unsigned char>((*dofvalues)[localDofs[i]]);
} else {
int indexX = static_cast<int>((elInfo->getCoord(i))[0] / pointdist) * 3;
int indexY = static_cast<int>((elInfo->getCoord(i))[1] / pointdist);
int value = static_cast<int>((*dofvalues)[localDofs[i]]);
unsigned char r = value % 256;
unsigned char g = (value - r % (256 * 256)) / 256;
unsigned char b = (value - r - g) / (256 * 256);
rowPointers[indexY][indexX] = r;
rowPointers[indexY][indexX + 1] = g;
rowPointers[indexY][indexX + 2] = b;
}
}
elInfo = stack.traverseNext(elInfo);
}
FILE *fp = fopen(filename.c_str(), "wb");
TEST_EXIT(fp)("Cannot open file for writing matrix picture file!\n");
png_infop info_ptr = png_create_info_struct(png_ptr);
if (!info_ptr) {
png_destroy_write_struct(&png_ptr, (png_infopp)NULL);
return 0;
}
png_init_io(png_ptr, fp);
png_set_IHDR(png_ptr, info_ptr, imageX, imageY, 8,
(imageType == 0 ? PNG_COLOR_TYPE_GRAY : PNG_COLOR_TYPE_RGB),
PNG_INTERLACE_NONE,
PNG_COMPRESSION_TYPE_DEFAULT,
PNG_FILTER_TYPE_DEFAULT);
png_set_rows(png_ptr, info_ptr, rowPointers);
png_write_png(png_ptr, info_ptr, PNG_TRANSFORM_IDENTITY, NULL);
png_destroy_write_struct(&png_ptr, &info_ptr);
fclose(fp);
return 0;
}
}
AMDiS/src/PngWriter.h
View file @ a9897bbf
......@@ -44,7 +44,7 @@ namespace AMDiS {
}
/// Writes a PNG image file.
int writeFile(const std::string name);
int writeFile(const std::string name, int imageType);
private:
/// Datacollector with values for the output file.
......
AMDiS/src/VtkWriter.cc
View file @ a9897bbf
......@@ -46,13 +46,13 @@ namespace AMDiS {
int VtkWriter::updateAnimationFile(std::string valueFilename,
std::vector< std::string > *paraViewAnimationFrames,
const char *animationFilename)
std::string animationFilename)