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Commit acf241d9 authored by Thomas Witkowski's avatar Thomas Witkowski
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* Some more optimization stuff

parent 8ff1b66a
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AMDiS/src/Assembler.cc
View file @ acf241d9
......@@ -1100,32 +1100,41 @@ namespace AMDiS {
Pre2::Pre2(Operator *op, Assembler *assembler, Quadrature *quad)
: SecondOrderAssembler(op, assembler, quad, true)
{}
{
q11 = Q11PsiPhi::provideQ11PsiPhi(owner->getRowFESpace()->getBasisFcts(),
owner->getColFESpace()->getBasisFcts(),
quadrature);
tmpLALt.resize(omp_get_max_threads());
for (int i = 0; i < omp_get_max_threads(); i++) {
tmpLALt[i] = NEW DimMat<double>*;
*(tmpLALt[i]) = NEW DimMat<double>(dim, NO_INIT);
}
}
Pre2::~Pre2()
{
for (int i = 0; i < static_cast<int>(tmpLALt.size()); i++) {
DELETE *(tmpLALt[i]);
DELETE tmpLALt[i];
}
}
void Pre2::calculateElementMatrix(const ElInfo *elInfo, ElementMatrix *mat)
{
DimMat<double> **LALt = NEW DimMat<double>*;
*LALt=NEW DimMat<double>(dim, NO_INIT);
const int **nEntries;
const int *k, *l;
const double *values;
double val;
if (firstCall) {
q11 = Q11PsiPhi::provideQ11PsiPhi(owner->getRowFESpace()->getBasisFcts(),
owner->getColFESpace()->getBasisFcts(),
quadrature);
firstCall = false;
}
LALt[0]->set(0.0);
int myRank = omp_get_thread_num();
DimMat<double> **LALt = tmpLALt[myRank];
DimMat<double> &tmpMat = *LALt[0];
tmpMat.set(0.0);
for (int i = 0; i < static_cast<int>( terms[myRank].size()); i++) {
(static_cast<SecondOrderTerm*>(terms[myRank][i]))->getLALt(elInfo, 1, LALt);
}
(*LALt[0]) *= elInfo->getDet();
tmpMat *= elInfo->getDet();
nEntries = q11->getNumberEntries();
......@@ -1134,9 +1143,9 @@ namespace AMDiS {
k = q11->getKVec(i, i);
l = q11->getLVec(i, i);
values = q11->getValVec(i, i);
val = 0.0;
double val = 0.0;
for (int m = 0; m < nEntries[i][i]; m++) {
val += values[m] * (*LALt[0])[k[m]][l[m]];
val += values[m] * tmpMat[k[m]][l[m]];
}
(*mat)[i][i] += val;
......@@ -1146,7 +1155,7 @@ namespace AMDiS {
values = q11->getValVec(i, j);
val = 0.0;
for (int m = 0; m < nEntries[i][j]; m++) {
val += values[m] * (*LALt[0])[k[m]][l[m]];
val += values[m] * tmpMat[k[m]][l[m]];
}
(*mat)[i][j] += val;
(*mat)[j][i] += val;
......@@ -1158,17 +1167,14 @@ namespace AMDiS {
k = q11->getKVec(i, j);
l = q11->getLVec(i, j);
values = q11->getValVec(i, j);
val = 0.0;
double val = 0.0;
for (int m = 0; m < nEntries[i][j]; m++) {
val += values[m] * (*LALt[0])[k[m]][l[m]];
val += values[m] * tmpMat[k[m]][l[m]];
}
(*mat)[i][j] += val;
}
}
}
DELETE *LALt;
DELETE LALt;
}
Quad2::Quad2(Operator *op, Assembler *assembler, Quadrature *quad)
......
AMDiS/src/Assembler.h
View file @ acf241d9
......@@ -859,6 +859,11 @@ namespace AMDiS {
*/
Pre2(Operator *op, Assembler *assembler, Quadrature *quad);
/** \brief
* Destructor.
*/
~Pre2();
/** \brief
* Implements SubAssembler::calculateElementMatrix().
*/
......@@ -867,7 +872,7 @@ namespace AMDiS {
/** \brief
* Implements SubAssembler::calculateElementVector().
*/
void calculateElementVector(const ElInfo *, ElementVector */*vec*/) {
void calculateElementVector(const ElInfo *, ElementVector *) {
ERROR_EXIT("should not be called\n");
};
......@@ -878,6 +883,11 @@ namespace AMDiS {
*/
const Q11PsiPhi *q11;
/** \brief
* Thread safe temporary vector of DimMats for calculation in calculateElementMatrix().
*/
::std::vector< DimMat<double>** > tmpLALt;
friend class SecondOrderAssembler;
};
......
AMDiS/src/DOFMatrix.cc
View file @ acf241d9
......@@ -298,33 +298,33 @@ namespace AMDiS {
if (j!=static_cast<int>(matrix[a].size())) matrix[a][j].col=c;
}
double *DOFMatrix::addSparseDOFEntry(double sign, int irow,
int jcol, double entry,
bool add)
void DOFMatrix::addSparseDOFEntry(double sign, int irow,
int jcol, double entry,
bool add)
{
FUNCNAME("DOFMatrix::addSparseDOFEntry()");
MatrixRow *row = &(matrix[irow]);
if (add && !entry)
return NULL;
double *result = NULL;
return;
int i, freeCol = -1, rowSize = static_cast<int>( row->size());
int freeCol = -1;
int rowSize = static_cast<int>( row->size());
TEST_EXIT_DBG(jcol >= 0 &&
jcol < colFESpace->getAdmin()->getUsedSize())
("Column index %d out of range 0-%d\n", jcol, colFESpace->getAdmin()->getUsedSize() - 1);
// first entry is diagonal entry
if (rowFESpace==colFESpace)
if (rowFESpace == colFESpace)
if (rowSize == 0) {
MatEntry newEntry = {irow, 0.0};
row->push_back(newEntry);
rowSize = 1;
}
int i;
// search jcol
for (i = 0; i < rowSize; i++) {
// jcol found ?
......@@ -350,22 +350,17 @@ namespace AMDiS {
if (!add)
(*row)[i].entry = 0.0;
(*row)[i].entry += sign * entry;
result = &((*row)[i].entry);
} else {
if(freeCol == -1) {
if (freeCol == -1) {
MatEntry newEntry = {jcol, sign * entry};
row->push_back(newEntry);
result = &((*row)[row->size() - 1].entry);
} else {
(*row)[freeCol].col = jcol;
if (!add)
(*row)[freeCol].entry = 0.0;
(*row)[freeCol].entry += sign * entry;
result = &((*row)[freeCol].entry);
}
}
return result;
}
}
void DOFMatrix::addMatEntry(int row, MatEntry entry)
......@@ -527,7 +522,7 @@ namespace AMDiS {
entry += a[rowIndex][j].entry * b[logIndex][physIndex].entry;
}
}
if(entry != 0.0) {
if (entry != 0.0) {
addSparseDOFEntry(1.0, rowIndex, i, entry);
}
}
......@@ -552,7 +547,7 @@ namespace AMDiS {
double entry = aRowIt->entry * bRowIt->entry;
if(entry != 0.0) {
if (entry != 0.0) {
addSparseDOFEntry(1.0, aCol, bCol, entry);
}
}
......@@ -592,14 +587,14 @@ namespace AMDiS {
// add x contributions to this row
for(i=0; i < static_cast<int>((*xIterator).size()); i++) {
colIndex = (*xIterator)[i].col;
if(colIndex >= 0) {
if (colIndex >= 0) {
addSparseDOFEntry(a, rowIndex, colIndex, (*xIterator)[i].entry);
}
}
// add y contributions to this row
for(i=0; i < static_cast<int>((*yIterator).size()); i++) {
colIndex = (*yIterator)[i].col;
if(colIndex >= 0) {
if (colIndex >= 0) {
addSparseDOFEntry(1.0, rowIndex, colIndex, (*yIterator)[i].entry);
}
}
......
AMDiS/src/DOFMatrix.h
View file @ acf241d9
......@@ -515,9 +515,9 @@ namespace AMDiS {
* Creates an entry with logical indices irow, icol if there is no entry
* yet. Than sign * entry is added to the value at this logical indices
*/
double *addSparseDOFEntry(double sign,
int irow, int jcol, double entry,
bool add = true);
void addSparseDOFEntry(double sign,
int irow, int jcol, double entry,
bool add = true);
inline double *hasSparseDOFEntry(int irow, int jcol) {
::std::vector<MatEntry>::iterator it;
......
AMDiS/src/ElInfo.cc
View file @ acf241d9
......@@ -178,7 +178,7 @@ namespace AMDiS {
int dim = mesh_->getDim();
int posIndex = DIM_OF_INDEX(pos, dim);
int offset = indexOffset[dim - 1][posIndex];
return boundary_[offset + i];
}
......
AMDiS/src/ElInfo.h
View file @ acf241d9
......@@ -190,7 +190,7 @@ namespace AMDiS {
/** \brief
* Get ElInfo's \ref boundary_[i]
*/
virtual BoundaryType getBoundary(int i) const {
inline BoundaryType getBoundary(int i) const {
return boundary_[i];
};
......
AMDiS/src/ElInfo3d.cc
View file @ acf241d9
......@@ -314,8 +314,6 @@ namespace AMDiS {
double det = 0.0;
int myRank = omp_get_thread_num();
WorldVector<double> *e0 = &tmpWorldVecs[0];
WorldVector<double> *e1 = &tmpWorldVecs[1];
WorldVector<double> *e2 = &tmpWorldVecs[2];
......@@ -362,13 +360,10 @@ namespace AMDiS {
const int (*cvg)[4] = NULL; /* cvg = child_vertex[el_type] */
int *ce; /* ce = child_edge[el_type][ichild] */
Element *nb, *nbk;
const FixVec<Element*, NEIGH> *neigh_old;
Element *el_old = elinfo_old->element_;
Flag fillFlag__local = elinfo_old->fillFlag_;
DegreeOfFreedom *dof;
int ov = -1;
FixVec<Element*, NEIGH> *neigh_local;
Flag fill_opp_coords;
Mesh *mesh = elinfo_old->getMesh();
TEST_EXIT_DBG(el_old->getChild(0))("missing child?\n");
......@@ -378,7 +373,7 @@ namespace AMDiS {
fillFlag_ = fillFlag__local;
parent_ = el_old;
level_ = elinfo_old->level_ + 1;
int el_type_local = ( dynamic_cast<ElInfo3d*>(const_cast<ElInfo*>( elinfo_old)))->getType();
int el_type_local = (dynamic_cast<const ElInfo3d*>(elinfo_old))->getType();
el_type = (el_type_local + 1) % 3;
TEST_EXIT_DBG(element_)("missing child %d?\n", ichild);
......@@ -409,8 +404,10 @@ namespace AMDiS {
if (fillFlag__local.isSet(Mesh::FILL_NEIGH) ||
fillFlag_.isSet(Mesh::FILL_OPP_COORDS)) {
neigh_local = &neighbour_;
neigh_old = &elinfo_old->neighbour_;
FixVec<Element*, NEIGH> *neigh_local = &neighbour_;
const FixVec<Element*, NEIGH> *neigh_old = &elinfo_old->neighbour_;
Flag fill_opp_coords;
fill_opp_coords.setFlags(fillFlag__local & Mesh::FILL_OPP_COORDS);
/*----- nb[0] is other child --------------------------------------------*/
......
AMDiS/src/Element.h
View file @ acf241d9
......@@ -110,22 +110,21 @@ namespace AMDiS {
/** \brief
* Returns \ref child[0]
*/
virtual Element* getFirstChild() const {
inline Element* getFirstChild() const {
return child[0];
};
/** \brief
* Returns \ref child[1]
*/
virtual Element* getSecondChild() const {
inline Element* getSecondChild() const {
return child[1];
};
/** \brief
* Returns \ref child[i], i=0,1
*/
virtual Element* getChild(int i) const {
FUNCNAME("Element::getChild()");
inline Element* getChild(int i) const {
TEST_EXIT_DBG(i==0 || i==1)("i must be 0 or 1\n");
return child[i];
};
......
AMDiS/src/Lagrange.cc
View file @ acf241d9
......@@ -790,26 +790,23 @@ namespace AMDiS {
el_info->testFlag(Mesh::FILL_BOUND);
DimVec<int> parts(dim, NO_INIT);
for (int i = 0; i < dim + 1; i++)
parts[i] = Global::getGeo(INDEX_OF_DIM(i, dim), dim);
int index = 0;
// boundaries
int index = 0;
int offset = 0;
BoundaryType boundaryType;
for (int i = dim - 1; i > 0; i--)
offset += parts[i];
offset += Global::getGeo(INDEX_OF_DIM(i, dim), dim);
for (int i = 0; i < dim; i++) {
for (int j = offset; j < offset + parts[i]; j++) {
int jto = offset + Global::getGeo(INDEX_OF_DIM(i, dim), dim);
for (int j = offset; j < jto; j++) {
boundaryType = el_info->getBoundary(j);
for (int k = 0; k < (*nDOF)[INDEX_OF_DIM(i, dim)]; k++) {
int kto = (*nDOF)[INDEX_OF_DIM(i, dim)];
for (int k = 0; k < kto; k++) {
result[index++] = boundaryType;
}
}
offset -= parts[i+1];
offset -= Global::getGeo(INDEX_OF_DIM(i + 1, dim), dim);
}
// interior nodes in the center
......
AMDiS/src/OEMSolver.hh
View file @ acf241d9
......@@ -96,7 +96,7 @@ namespace AMDiS {
}
if (res <= tolerance) {
INFO(info,6)("finished successfully with %d iterations\n", iter);
INFO(info,6)("finished successfully with %d iterations\n");
return(1);
}
......
AMDiS/src/Operator.cc
View file @ acf241d9
......@@ -122,22 +122,23 @@ namespace AMDiS {
}
void OperatorTerm::l1lt(const DimVec<WorldVector<double> >& Lambda,
DimMat<double>& LALt,
double factor)
DimMat<double>& LALt,
double factor)
{
int i, j, k;
static const int dimOfWorld = Global::getGeo(WORLD);
int dim = LALt.getNumRows() - 1;
static const int dimOfWorld = Global::getGeo(WORLD);
int dim = LALt.getNumRows() - 1;
double val = 0.0;
for (i = 0; i <= dim; i++) {
for (val = k = 0; k < dimOfWorld; k++)
for (int i = 0; i <= dim; i++) {
val = 0.0;
for (int k = 0; k < dimOfWorld; k++)
val += Lambda[i][k] * Lambda[i][k];
val *= factor;
LALt[i][i] += val;
for (j = i+1; j <= dim; j++) {
for (val = k = 0; k < dimOfWorld; k++)
for (int j = i + 1; j <= dim; j++) {
val = 0.0;
for (int k = 0; k < dimOfWorld; k++)
val += Lambda[i][k] * Lambda[j][k];
val *= factor;
LALt[i][j] += val;
......
AMDiS/src/PeriodicBC.cc
View file @ acf241d9
......@@ -209,9 +209,8 @@ namespace AMDiS {
TEST_EXIT_DBG(matrix)("no matrix\n");
if (matrix == masterMatrix_) {
const BasisFunction *basFcts = rowFESpace->getBasisFcts();
int num = basFcts->getNumber();
FREE_MEMORY(neighIndices_, DegreeOfFreedom, num);
FREE_MEMORY(neighIndices_, DegreeOfFreedom,
rowFESpace->getBasisFcts()->getNumber());
masterMatrix_ = NULL;
}
......@@ -221,13 +220,15 @@ namespace AMDiS {
int row, col, newRow, newCol;
double entry, *newEntryPtr;
for( rowIt = matrix->begin(), row = 0; rowIt != rowEnd; ++rowIt, ++row) {
for (rowIt = matrix->begin(), row = 0; rowIt != rowEnd; ++rowIt, ++row) {
rowSize = static_cast<int>(rowIt->size());
newRow = (*associated_)[row];
for (colIndex = 0; colIndex < rowSize; colIndex++) {
col = (*rowIt)[colIndex].col;
if(col == DOFMatrix::UNUSED_ENTRY) continue;
if(col == DOFMatrix::NO_MORE_ENTRIES) break;
if (col == DOFMatrix::UNUSED_ENTRY)
continue;
if (col == DOFMatrix::NO_MORE_ENTRIES)
break;
newCol = (*associated_)[col];
newEntryPtr = matrix->hasSparseDOFEntry(newRow, newCol);
......
AMDiS/src/Preconditioner.h
View file @ acf241d9
......@@ -241,7 +241,7 @@ namespace AMDiS {
int size = scalPrecons.getSize();
#ifdef _OPENMP
#pragma omp parallel for
#pragma omp parallel for num_threads(size)
#endif
for (i = 0; i < size; i++) {
scalPrecons[i]->init();
......@@ -255,7 +255,7 @@ namespace AMDiS {
int i;
int size = scalPrecons.getSize();
#ifdef _OPENMP
#pragma omp parallel for
#pragma omp parallel for num_threads(size)
#endif
for (i = 0; i < size; i++) {
scalPrecons[i]->precon(x->getDOFVector(i));
......@@ -269,7 +269,7 @@ namespace AMDiS {
int i;
int size = scalPrecons.getSize();
#ifdef _OPENMP
#pragma omp parallel for
#pragma omp parallel for num_threads(size)
#endif
for (i = 0; i < size; i++) {
scalPrecons[i]->exit();
......
AMDiS/src/ProblemVec.cc
View file @ acf241d9
......@@ -701,6 +701,8 @@ namespace AMDiS {
#pragma omp parallel for
#endif
for (i = 0; i < numComponents_; i++) {
const BasisFunction *basisFcts = componentSpaces_[i]->getBasisFcts();
for (int j = 0; j < numComponents_; j++) {
// Only if this variable is true, the current matrix will be assembled.
bool assembleMatrix = true;
......@@ -734,7 +736,7 @@ namespace AMDiS {
} else {
BoundaryType *bound = NULL;
if (useGetBound_) {
bound = GET_MEMORY(BoundaryType, componentSpaces_[i]->getBasisFcts()->getNumber());
bound = GET_MEMORY(BoundaryType, basisFcts->getNumber());
}
TraverseStack stack;
......@@ -742,7 +744,7 @@ namespace AMDiS {
while (elInfo) {
if (useGetBound_) {
componentSpaces_[i]->getBasisFcts()->getBound(elInfo, bound);
basisFcts->getBound(elInfo, bound);
}
if (assembleMatrix) {
......@@ -767,7 +769,7 @@ namespace AMDiS {
matrix->getBoundaryManager()->exitMatrix(matrix);
if (useGetBound_) {
FREE_MEMORY(bound, BoundaryType, componentSpaces_[i]->getBasisFcts()->getNumber());
FREE_MEMORY(bound, BoundaryType, basisFcts->getNumber());
}
}
......
AMDiS/src/RefinementManager.cc
View file @ acf241d9
......@@ -15,9 +15,7 @@ namespace AMDiS {
RefinementManager* RefinementManager::traversePtr = NULL;
bool RefinementManager::doMoreRecursiveRefine = false;
int RefinementManager::callRefineInterpol = 0;
RCNeighbourList* RefinementManager3d::refList = NULL;
int RefinementManager::globalMark = 0;
int RefinementManager::globalRefineFct(ElInfo* elinfo)
......@@ -32,7 +30,9 @@ namespace AMDiS {
{
FUNCNAME("RefinementManager::globalRefine()");
if(mark <= 0) return static_cast<Flag>(0);
if (mark <= 0)
return static_cast<Flag>(0);
globalMark = mark;
aMesh->traverse(-1,
Mesh::CALL_LEAF_EL |
......@@ -50,7 +50,6 @@ namespace AMDiS {
FUNCNAME("RefinementManager::refineMesh()");
mesh = aMesh;
int n_elements = mesh->getNumberOfLeaves();
ElInfo *el_info;
......
AMDiS/src/RefinementManager2d.cc
View file @ acf241d9
......@@ -17,8 +17,9 @@ namespace AMDiS {
ElInfo* RefinementManager2d::refineFunction(ElInfo* el_info)
{
FUNCNAME("RefinementManager::refineFunction");
int n_neigh;
FUNCNAME("RefinementManager::refineFunction()");
int n_neigh;
bool bound = false;
DegreeOfFreedom *edge[2];
......@@ -76,7 +77,7 @@ namespace AMDiS {
::std::map<int, VertexVector*>::iterator it;
::std::map<int, VertexVector*>::iterator end = mesh->getPeriodicAssociations().end();
while(edge[0] != NULL) {
while (edge[0] != NULL) {
periodicList = refineList->periodicSplit(edge,
next_edge,
&n_neigh,
......@@ -134,8 +135,6 @@ namespace AMDiS {
/* and now refine the patch */
/****************************************************************************/
//newDOF = refinePatch(edge, refineList, n_neigh, bound);
DELETE refineList;
return(el_info);
......@@ -206,63 +205,10 @@ namespace AMDiS {
/****************************************************************************/
/* first refine the element */
/****************************************************************************/
// check for periodic boundary
// DegreeOfFreedom *periodicDOF[3] = {NULL, NULL, NULL};
// RCNeighbourList *periodicRefineList = NULL;
// int n_neigh_periodic;
// if (neigh &&
// (neigh->getDOF(0) != el->getDOF(1)) &&
// (neigh->getDOF(0) != el->getDOF(0)))
// {
// periodicDOF[0] = mesh->getDOF(VERTEX);
// mesh->incrementNumberOfVertices(1);
// mesh->incrementNumberOfEdges(1);
// if (mesh->getNumberOfDOFs(EDGE)) {
// periodicDOF[1] = mesh->getDOF(EDGE);
// periodicDOF[2] = mesh->getDOF(EDGE);
// }
// DegreeOfFreedom *edge[2] = {
// const_cast<DegreeOfFreedom*>(el->getDOF(0)),
// const_cast<DegreeOfFreedom*>(el->getDOF(1))
// };
// DegreeOfFreedom *periodicEdge[2] = {
// const_cast<DegreeOfFreedom*>(neigh->getDOF(0)),
// const_cast<DegreeOfFreedom*>(neigh->getDOF(1))
// };
// periodicRefineList = refineList->periodicSplit(edge,
// &n_neigh,
// periodicEdge,
// &n_neigh_periodic);
// // dynamic_cast<LeafDataPeriodic*>(neigh->getElementData(PERIODIC))->
// // setNewDOF(dof[0][0]);
// // dynamic_cast<LeafDataPeriodic*>(el->getElementData(PERIODIC))->
// // setNewDOF(periodicDOF[0][0]);
// // MSG("el %d new dof %d periodic dof %d\n",
// // el->getIndex(),