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Commit d5e4c931 authored by Thomas Witkowski's avatar Thomas Witkowski
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Added some small features to ArhReader and ArhWriter.

parent 5f9656c6
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Showing with 57 additions and 44 deletions
AMDiS/libtool
View file @ d5e4c931
......@@ -82,13 +82,13 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
LTCC="gcc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
# A language-specific compiler.
CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
CC="gcc"
# Is the compiler the GNU C compiler?
with_gcc=yes
......@@ -171,7 +171,7 @@ dlopen_self=unknown
dlopen_self_static=unknown
# Compiler flag to prevent dynamic linking.
link_static_flag=""
link_static_flag="-static"
# Compiler flag to turn off builtin functions.
no_builtin_flag=" -fno-builtin"
......@@ -6798,13 +6798,13 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
LTCC="gcc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
# A language-specific compiler.
CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicxx"
CC="g++"
# Is the compiler the GNU C compiler?
with_gcc=yes
......@@ -6887,7 +6887,7 @@ dlopen_self=unknown
dlopen_self_static=unknown
# Compiler flag to prevent dynamic linking.
link_static_flag=""
link_static_flag="-static"
# Compiler flag to turn off builtin functions.
no_builtin_flag=" -fno-builtin"
......@@ -6954,11 +6954,11 @@ predeps=""
# Dependencies to place after the objects being linked to create a
# shared library.
postdeps="-lmpi_cxx -lmpi -lopen-rte -lopen-pal -libverbs -lrt -lnuma -ldl -lnsl -lutil -ldl -lstdc++ -lm -lgcc_s -lpthread -lc -lgcc_s"
postdeps="-lstdc++ -lm -lgcc_s -lc -lgcc_s"
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path="-L/usr/lib64 -L/licsoft/libraries/openmpi/1.2.6/64bit/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/fastfs/wir/local/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.."
compiler_lib_search_path="-L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/fastfs/wir/local/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.."
# Method to check whether dependent libraries are shared objects.
deplibs_check_method="pass_all"
......@@ -7103,7 +7103,7 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
LTCC="gcc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
......
AMDiS/src/io/ArhReader.cc
View file @ d5e4c931
......@@ -24,27 +24,35 @@ namespace AMDiS {
using namespace std;
void ArhReader::read(std::string filename, Mesh *mesh)
void ArhReader::read(string filename, Mesh *mesh,
DOFVector<double>* vec0,
DOFVector<double>* vec1,
DOFVector<double>* vec2)
{
std::vector<DOFVector<double>*> vecs(0);
ArhReader::read(filename, mesh, vecs);
}
vector<DOFVector<double>*> vecs(0);
if (vec0 != NULL)
vecs.push_back(vec0);
if (vec1 != NULL)
vecs.push_back(vec1);
if (vec2 != NULL)
vecs.push_back(vec2);
void ArhReader::read(std::string filename, Mesh *mesh, DOFVector<double>* vec)
{
std::vector<DOFVector<double>*> vecs(1);
vecs[0] = vec;
ArhReader::read(filename, mesh, vecs);
}
void ArhReader::read(string filename, Mesh *mesh,
std::vector<DOFVector<double>*> vecs)
vector<DOFVector<double>*> vecs)
{
FUNCNAME("ArhReader::read()");
// === Get set of all macro elements in mesh. ===
std::set<int> macroInMesh;
for (std::deque<MacroElement*>::iterator it = mesh->getMacroElements().begin();
it != mesh->getMacroElements().end(); ++it)
macroInMesh.insert((*it)->getIndex());
RefinementManager *refManager = NULL;
switch (mesh->getDim()) {
case 2:
......@@ -88,7 +96,8 @@ namespace AMDiS {
MeshStructure elementStructure;
elementStructure.init(structureCode, codeSize);
elementStructure.fitMeshToStructure(mesh, refManager, false, elIndex);
if (macroInMesh.count(elIndex) == 1)
elementStructure.fitMeshToStructure(mesh, refManager, false, elIndex);
uint32_t nValuesPerVector = 0;
file.read(reinterpret_cast<char*>(&nValuesPerVector), 4);
......@@ -96,7 +105,8 @@ namespace AMDiS {
for (unsigned int j = 0; j < nValueVectors; j++) {
vector<double> values(nValuesPerVector);
file.read(reinterpret_cast<char*>(&(values[0])), 8 * nValuesPerVector);
setDofValues(elIndex, mesh, values, vecs[j]);
if (macroInMesh.count(elIndex) == 1)
setDofValues(elIndex, mesh, values, vecs[j]);
}
}
......@@ -107,7 +117,7 @@ namespace AMDiS {
void ArhReader::setDofValues(int macroElIndex, Mesh *mesh,
std::vector<double>& values, DOFVector<double>* vec)
vector<double>& values, DOFVector<double>* vec)
{
FUNCNAME("ArhReader::setDofValues()");
......
AMDiS/src/io/ArhReader.h
View file @ d5e4c931
......@@ -30,9 +30,10 @@ namespace AMDiS {
class ArhReader
{
public:
static void read(std::string filename, Mesh *mesh);
static void read(std::string filename, Mesh *mesh, DOFVector<double>* vec);
static void read(std::string filename, Mesh *mesh,
DOFVector<double>* vec0 = NULL,
DOFVector<double>* vec1 = NULL,
DOFVector<double>* vec2 = NULL);
static void read(std::string filename, Mesh *mesh,
std::vector<DOFVector<double>*> vecs);
......
AMDiS/src/io/ArhWriter.cc
View file @ d5e4c931
......@@ -24,24 +24,25 @@ namespace AMDiS {
using namespace std;
void ArhWriter::write(string filename, Mesh *mesh)
void ArhWriter::write(string filename, Mesh *mesh,
DOFVector<double>* vec0,
DOFVector<double>* vec1,
DOFVector<double>* vec2)
{
std::vector<DOFVector<double>*> vecs(0);
ArhWriter::write(filename, mesh, vecs);
}
void ArhWriter::write(std::string filename, Mesh *mesh, DOFVector<double>* vec)
{
std::vector<DOFVector<double>*> vecs(1);
vecs[0] = vec;
vector<DOFVector<double>*> vecs(0);
if (vec0 != NULL)
vecs.push_back(vec0);
if (vec1 != NULL)
vecs.push_back(vec1);
if (vec2 != NULL)
vecs.push_back(vec2);
ArhWriter::write(filename, mesh, vecs);
}
void ArhWriter::write(std::string filename, Mesh *mesh,
std::vector<DOFVector<double>*> vecs)
void ArhWriter::write(string filename, Mesh *mesh,
vector<DOFVector<double>*> vecs)
{
FUNCNAME("ArhWriter::write()");
......@@ -69,7 +70,7 @@ namespace AMDiS {
file.write(reinterpret_cast<char*>(&nAllValues), 4);
MeshStructure elementStructure;
std::vector<std::vector<double> > values(vecs.size());
vector<vector<double> > values(vecs.size());
int32_t macroElIndex = -1;
elInfo = stack.traverseFirst(mesh, -1, Mesh::CALL_EVERY_EL_PREORDER);
......@@ -111,9 +112,9 @@ namespace AMDiS {
}
void ArhWriter::writeMacroElement(std::ofstream &file,
void ArhWriter::writeMacroElement(ofstream &file,
MeshStructure &code,
std::vector<std::vector<double> >& values,
vector<vector<double> >& values,
int32_t elIndex)
{
file.write(reinterpret_cast<char*>(&elIndex), 4);
......
AMDiS/src/io/ArhWriter.h
View file @ d5e4c931
......@@ -33,9 +33,10 @@ namespace AMDiS {
class ArhWriter
{
public:
static void write(std::string filename, Mesh *mesh);
static void write(std::string filename, Mesh *mesh, DOFVector<double>* vec);
static void write(std::string filename, Mesh *mesh,
DOFVector<double>* vec0 = NULL,
DOFVector<double>* vec1 = NULL,
DOFVector<double>* vec2 = NULL);
static void write(std::string filename, Mesh *mesh,
std::vector<DOFVector<double>*> vecs);
......
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