Commit ddc24f0f authored by Thomas Witkowski's avatar Thomas Witkowski

Small bugfixes.

parent 3207c0f2
......@@ -51,32 +51,32 @@ build_old_libs=yes
pic_mode=default
# Whether or not to optimize for fast installation.
fast_install=yes
fast_install=needless
# The host system.
host_alias=
host=i686-redhat-linux-gnu
host=x86_64-unknown-linux-gnu
host_os=linux-gnu
# The build system.
build_alias=
build=i686-redhat-linux-gnu
build=x86_64-unknown-linux-gnu
build_os=linux-gnu
# A sed program that does not truncate output.
SED="/bin/sed"
SED="/usr/bin/sed"
# Sed that helps us avoid accidentally triggering echo(1) options like -n.
Xsed="$SED -e 1s/^X//"
# A grep program that handles long lines.
GREP="/bin/grep"
GREP="/usr/bin/grep"
# An ERE matcher.
EGREP="/bin/grep -E"
EGREP="/usr/bin/grep -E"
# A literal string matcher.
FGREP="/bin/grep -F"
FGREP="/usr/bin/grep -F"
# A BSD- or MS-compatible name lister.
NM="/usr/bin/nm -B"
......@@ -85,7 +85,7 @@ NM="/usr/bin/nm -B"
LN_S="ln -s"
# What is the maximum length of a command?
max_cmd_len=98304
max_cmd_len=1572864
# Object file suffix (normally "o").
objext=o
......@@ -204,7 +204,7 @@ runpath_var=LD_RUN_PATH
shlibpath_var=LD_LIBRARY_PATH
# Is shlibpath searched before the hard-coded library search path?
shlibpath_overrides_runpath=no
shlibpath_overrides_runpath=yes
# Format of library name prefix.
libname_spec="lib\$name"
......@@ -233,10 +233,10 @@ finish_eval=""
hardcode_into_libs=yes
# Compile-time system search path for libraries.
sys_lib_search_path_spec="/usr/lib/openmpi/1.4-gcc/lib /usr/lib /usr/lib/gcc/i386-redhat-linux/4.1.2 /lib"
sys_lib_search_path_spec="/usr/lib64/gcc/x86_64-suse-linux/4.5 /usr/lib64 /lib64 /usr/x86_64-suse-linux/lib"
# Run-time system search path for libraries.
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/mysql /usr/lib/octave-3.0.1 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib /usr/lib/xulrunner-1.9.2 "
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/lib64/Xaw3d /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/lib/Xaw3d /usr/x86_64-suse-linux/lib /usr/local/lib /opt/kde3/lib /lib64 /lib /usr/lib64 /usr/lib /usr/local/lib64 /opt/kde3/lib64 /usr/lib64/graphviz /usr/lib64/graphviz/sharp /usr/lib64/graphviz/java /usr/lib64/graphviz/perl /usr/lib64/graphviz/php /usr/lib64/graphviz/ocaml /usr/lib64/graphviz/python /usr/lib64/graphviz/lua /usr/lib64/graphviz/tcl /usr/lib64/graphviz/guile /usr/lib64/graphviz/ruby /usr/lib64/octave-3.2.4 "
# Whether dlopen is supported.
dlopen_support=unknown
......@@ -253,7 +253,7 @@ striplib="strip --strip-unneeded"
# The linker used to build libraries.
LD="/usr/bin/ld"
LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
# Commands used to build an old-style archive.
old_archive_cmds="\$AR \$AR_FLAGS \$oldlib\$oldobjs~\$RANLIB \$oldlib"
......@@ -8908,7 +8908,7 @@ build_old_libs=`case $build_libtool_libs in yes) echo no;; *) echo yes;; esac`
# ### BEGIN LIBTOOL TAG CONFIG: CXX
# The linker used to build libraries.
LD="/usr/bin/ld"
LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
# Commands used to build an old-style archive.
old_archive_cmds="\$AR \$AR_FLAGS \$oldlib\$oldobjs~\$RANLIB \$oldlib"
......@@ -9039,17 +9039,17 @@ file_list_spec=""
hardcode_action=immediate
# The directories searched by this compiler when creating a shared library.
compiler_lib_search_dirs=". /usr/lib/openmpi/1.4-gcc/lib /usr/lib/openmpi/1.4-gcc/lib /usr/lib/gcc/i386-redhat-linux/4.1.2 /usr/lib/gcc/i386-redhat-linux/4.1.2 /usr/lib/gcc/i386-redhat-linux/4.1.2/../../.."
compiler_lib_search_dirs="/usr/lib64/gcc/x86_64-suse-linux/4.5 /usr/lib64/gcc/x86_64-suse-linux/4.5/../../../../lib64 /lib/../lib64 /usr/lib/../lib64 /usr/lib64/gcc/x86_64-suse-linux/4.5/../../../../x86_64-suse-linux/lib /usr/lib64/gcc/x86_64-suse-linux/4.5/../../.."
# Dependencies to place before and after the objects being linked to
# create a shared library.
predep_objects="/usr/lib/crti.o /usr/lib/gcc/i386-redhat-linux/4.1.2/crtbeginS.o"
postdep_objects="/usr/lib/gcc/i386-redhat-linux/4.1.2/crtendS.o /usr/lib/crtn.o"
predep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.5/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.5/crtbeginS.o"
postdep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.5/crtendS.o /usr/lib64/gcc/x86_64-suse-linux/4.5/../../../../lib64/crtn.o"
predeps=""
postdeps="-lstdc++ -lm -lgcc_s -lc -lgcc_s"
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path="-L. -L/usr/lib/openmpi/1.4-gcc/lib -L/usr/lib/openmpi/1.4-gcc/lib -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../.."
compiler_lib_search_path="-L/usr/lib64/gcc/x86_64-suse-linux/4.5 -L/usr/lib64/gcc/x86_64-suse-linux/4.5/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.5/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.5/../../.."
# ### END LIBTOOL TAG CONFIG: CXX
......@@ -12,31 +12,6 @@ namespace AMDiS {
std::map<DegreeOfFreedom*, bool> Element::deletedDOFs;
int Element::getRegion() const
{
if (!elementData)
return -1;
ElementRegion_ED* red =
dynamic_cast<ElementRegion_ED*>(elementData->getElementData(ELEMENT_REGION));
if (red)
return red->getRegion();
return -1;
}
void Element::setDOFPtrs()
{
FUNCNAME("Element::setDOFPtrs()");
TEST_EXIT_DBG(mesh)("no mesh!\n");
dof = mesh->createDOFPtrs();
}
Element::Element(Mesh *aMesh)
{
mesh = aMesh;
......@@ -48,7 +23,7 @@ namespace AMDiS {
mark = 0;
if (mesh) {
setDOFPtrs();
setDofPtrs();
} else {
mesh = NULL;
}
......@@ -74,6 +49,31 @@ namespace AMDiS {
}
int Element::getRegion() const
{
if (!elementData)
return -1;
ElementRegion_ED* red =
dynamic_cast<ElementRegion_ED*>(elementData->getElementData(ELEMENT_REGION));
if (red)
return red->getRegion();
return -1;
}
void Element::setDofPtrs()
{
FUNCNAME("Element::setDofPtrs()");
TEST_EXIT_DBG(mesh)("no mesh!\n");
dof = mesh->createDofPtrs();
}
bool Element::deleteElementData(int typeID)
{
FUNCNAME("Element::deleteElementData()");
......
......@@ -513,7 +513,7 @@ namespace AMDiS {
protected:
/// Sets Element's \ref dof pointer. Used by friend class Mesh.
void setDOFPtrs();
void setDofPtrs();
/// Sets Element's \ref index. Used by friend class Mesh.
inline void setIndex(int i)
......
......@@ -500,9 +500,9 @@ namespace AMDiS {
}
DegreeOfFreedom **Mesh::createDOFPtrs()
DegreeOfFreedom **Mesh::createDofPtrs()
{
FUNCNAME("Mesh::createDOFPtrs()");
FUNCNAME("Mesh::createDofPtrs()");
if (nNodeEl <= 0)
return NULL;
......
......@@ -220,7 +220,7 @@ namespace AMDiS {
const DOFAdmin* getVertexAdmin() const;
/// Allocates a array of DOF pointers. The array holds one pointer for each node.
DegreeOfFreedom **createDOFPtrs();
DegreeOfFreedom **createDofPtrs();
/// Returns \ref preserveCoarseDOFs of the mesh
inline bool queryCoarseDOFs() const
......@@ -406,7 +406,7 @@ namespace AMDiS {
void removeMacroElements(std::set<MacroElement*>& macros,
const FiniteElemSpace* feSpace);
/// Frees the array of DOF pointers (see \ref createDOFPtrs)
/// Frees the array of DOF pointers (see \ref createDofPtrs)
void freeDOFPtrs(DegreeOfFreedom **ptrs);
/// Used by \ref findElementAtPoint.
......
......@@ -138,6 +138,7 @@ namespace AMDiS {
// === create marker ===
if (initFlag.isSet(INIT_MARKER))
createMarker();
if (adoptProblem && adoptFlag.isSet(INIT_MARKER))
marker = adoptProblem->getMarkers();
......@@ -197,8 +198,8 @@ namespace AMDiS {
&globalRefinements);
#endif
bool initMesh = initFlag.isSet(INIT_MESH) ||
(adoptProblem && adoptFlag.isSet(INIT_MESH));
bool initMesh = initFlag.isSet(INIT_MESH);
// || (adoptProblem && adoptFlag.isSet(INIT_MESH));
// Initialize the meshes if there is no serialization file.
......
......@@ -68,8 +68,6 @@ namespace AMDiS {
swapfile.close();
}
file.push(boost::iostreams::file_descriptor_sink(name, std::ios::trunc));
// std::ofstream file;
// file.open(name.c_str());
file << "<?xml version=\"1.0\"?>\n";
file << "<VTKFile type=\"PUnstructuredGrid\">\n";
......@@ -102,8 +100,6 @@ namespace AMDiS {
file << " </PUnstructuredGrid>\n";
file << "</VTKFile>\n";
// file.close();
}
......@@ -121,8 +117,6 @@ namespace AMDiS {
swapfile.close();
}
file.push(boost::iostreams::file_descriptor_sink(animationFilename, std::ios::trunc));
// std::ofstream file;
// file.open(animationFilename.c_str());
file << "<?xml version=\"1.0\"?>\n";
file << "<VTKFile type=\"Collection\" version=\"0.1\" >" << "\n";
......@@ -140,8 +134,6 @@ namespace AMDiS {
file << "</Collection>\n";
file << "</VTKFile>\n";
// file.close();
return 0;
}
......
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