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Commit ec03ab8b authored by Thomas Witkowski's avatar Thomas Witkowski
Browse files

Andreas' last changes, but now with AMDiS code style.

parent 2f4c9a9a
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Showing with 104 additions and 82 deletions
AMDiS/src/DOFVector.h
View file @ ec03ab8b
......@@ -209,7 +209,7 @@ namespace AMDiS {
inline void setName(std::string n)
{
name=n;
name = n;
}
inline BoundaryManager* getBoundaryManager() const
......
AMDiS/src/FixVec.h
View file @ ec03ab8b
......@@ -531,8 +531,9 @@ namespace AMDiS {
inline WorldVector<double> operator*(double d, const WorldVector<double>& v)
{
return v*d;
return v * d;
}
inline WorldVector<double> operator+(const WorldVector<double>& v1,
const WorldVector<double>& v2)
{
......
AMDiS/src/ProblemImplicit.cc
View file @ ec03ab8b
......@@ -2,56 +2,56 @@
namespace AMDiS {
namespace calcspace {
void readDofvec(std::istream& in, DOFVector< double >* vec, Mesh* mesh)
void readDofvec(std::istream& in, DOFVector<double>* vec, Mesh* mesh)
{
long size = mesh->getNumberOfVertices();
std::string buf;
getline(in, buf);
while(buf != "vertex values: solution") getline(in, buf);
for(long i = 0; i < size; i++)
{
while (buf != "vertex values: solution")
getline(in, buf);
for (long i = 0; i < size; i++) {
in >> buf;
(*vec)[i] = atof(buf.c_str());
}
}
void readR(std::istream& inStream, double eps,
DOFVector< double >* r, DOFVector< double >* phi1,
DOFVector< double >* phi2, DOFVector< double >* levelSet,
Mesh* mesh)
DOFVector<double>* r, DOFVector<double>* phi1,
DOFVector<double>* phi2, DOFVector<double>* levelSet,
Mesh* mesh)
{
readDofvec(inStream, r, mesh);
std::vector< double >& vecR = r->getVector();
std::vector< double >& vecPhi1 = phi1->getVector();
std::vector< double >& vecPhi2 = phi2->getVector();
std::vector< double >& vecLevelSet = levelSet->getVector();
bool checkSize = vecR.size() != vecPhi1.size() &&
vecPhi2.size() != vecR.size();
std::vector<double>& vecR = r->getVector();
std::vector<double>& vecPhi1 = phi1->getVector();
std::vector<double>& vecPhi2 = phi2->getVector();
std::vector<double>& vecLevelSet = levelSet->getVector();
bool checkSize =
vecR.size() != vecPhi1.size() && vecPhi2.size() != vecR.size();
TEST_EXIT(checkSize)("something went wrong\n");
for (int i = vecR.size()-1; i >= 0; --i)
{
for (int i = vecR.size() - 1; i >= 0; --i) {
vecPhi1[i] = Phi1(vecR[i], eps);
vecPhi2[i] = Phi2(vecR[i], eps);
vecLevelSet[i] = LevelSet(vecR[i]);
}
}
void readPhi1(istream& inStream, double eps,
DOFVector< double >* r, DOFVector< double >* phi1,
DOFVector< double >* phi2, DOFVector< double >* levelSet,
Mesh* mesh)
DOFVector<double>* r, DOFVector<double>* phi1,
DOFVector<double>* phi2, DOFVector<double>* levelSet,
Mesh* mesh)
{
readDofvec(inStream, phi1, mesh);
std::vector< double >& vecR = r->getVector();
std::vector< double >& vecPhi1 = phi1->getVector();
std::vector< double >& vecPhi2 = phi2->getVector();
std::vector< double >& vecLevelSet = levelSet->getVector();
std::vector<double>& vecR = r->getVector();
std::vector<double>& vecPhi1 = phi1->getVector();
std::vector<double>& vecPhi2 = phi2->getVector();
std::vector<double>& vecLevelSet = levelSet->getVector();
bool checkSize = vecR.size() != vecPhi1.size() &&
vecPhi2.size() != vecR.size();
bool checkSize =
vecR.size() != vecPhi1.size() && vecPhi2.size() != vecR.size();
TEST_EXIT(checkSize)("something went wrong\n");
for (int i = vecR.size()-1; i>= 0; --i)
{
for (int i = vecR.size() - 1; i>= 0; --i) {
vecR[i] = Phi1ToR(vecPhi1[i], eps);
//vecPhi2[i] = Phi2(vecR[i], eps);
vecPhi2[i] = 1 - vecPhi1[i];
......@@ -59,32 +59,30 @@ namespace AMDiS {
}
}
void readPhi2(istream& inStream, double eps,
DOFVector< double >* r, DOFVector< double >* phi1,
DOFVector< double >* phi2, DOFVector< double >* levelSet,
DOFVector<double>* r, DOFVector<double>* phi1,
DOFVector<double>* phi2, DOFVector<double>* levelSet,
Mesh* mesh)
{
readDofvec(inStream, phi2, mesh);
std::vector< double >& vecR = r->getVector();
std::vector< double >& vecPhi1 = phi1->getVector();
std::vector< double >& vecPhi2 = phi2->getVector();
std::vector< double >& vecLevelSet = levelSet->getVector();
std::vector<double>& vecR = r->getVector();
std::vector<double>& vecPhi1 = phi1->getVector();
std::vector<double>& vecPhi2 = phi2->getVector();
std::vector<double>& vecLevelSet = levelSet->getVector();
bool checkSize = vecR.size() != vecPhi1.size() &&
vecPhi2.size() != vecR.size();
bool checkSize = vecR.size() != vecPhi1.size() && vecPhi2.size() != vecR.size();
TEST_EXIT(checkSize)("something went wrong\n");
for (int i = vecR.size()-1; i >= 0; --i)
{
for (int i = vecR.size() - 1; i >= 0; --i) {
vecR[i] = Phi2ToR(vecPhi2[i], eps);
//vecPhi1[i] = Phi1(vecR[i], eps);
vecPhi1[i] = 1 - vecPhi2[i];
vecLevelSet[i] = LevelSet(vecR[i]);
}
}
}
bool ProblemImplicitScal::createImplicitMesh()
{
std::string meshFilename("");
......@@ -98,14 +96,14 @@ namespace AMDiS {
if (dofFilename.length() == 0)
return false;
double eps(-1);
double eps(-1.0);
GET_PARAMETER(0, name + "->implicit mesh->eps", "%d", &eps);
if (eps<0)
if (eps < 0)
return false;
int serType(-1);
GET_PARAMETER(0, name + "->implicit mesh->type", "%d", &serType);
if (serType<0)
if (serType < 0)
return false;
TEST_EXIT(mesh != NULL)("the mesh was not created\n");
......@@ -139,16 +137,18 @@ namespace AMDiS {
return true;
}
void ProblemImplicitScal::initialize(Flag initFlag,
ProblemScal* adaptProblem, Flag adoptFlag)
{
FUNCNAME("ImplicitScal::initialize()");
FUNCNAME("ProblemImplicitScal::initialize()");
ProblemScal::initialize(CREATE_MESH);
createImplicitMesh();
initFlag = initFlag & ~CREATE_MESH;
ProblemScal::initialize(initFlag);
}
bool ProblemImplicitVec::createImplicitMesh()
{
//check each mesh if it's an implicit one
......@@ -156,15 +156,15 @@ namespace AMDiS {
phi1.resize(meshes.size());
phi2.resize(meshes.size());
levelSet.resize(meshes.size());
for(int i=0;i<meshes.size();++i) {
createImplicitMesh(i);
}
for (int i = 0; i < meshes.size(); ++i)
createImplicitMesh(i);
}
bool ProblemImplicitVec::createImplicitMesh(int p)
{
std::string path=name + "->implicit mesh[" +
boost::lexical_cast< std::string >(p) + "]->";
std::string path =
name + "->implicit mesh[" + boost::lexical_cast< std::string >(p) + "]->";
std::string meshFilename("");
GET_PARAMETER(0, path + "mesh file", &meshFilename);
//if no file name is given, there's no implicit mesh
......@@ -175,10 +175,10 @@ namespace AMDiS {
if (dofFilename.length() == 0)
return false;
double eps(-1);
double eps(-1.0);
GET_PARAMETER(0, path + "eps", "%d", &eps);
if(eps < 0)
return false;
if (eps < 0.0)
return false;
int serType(-1);
GET_PARAMETER(0, path + "type", "%d", &serType);
if (serType < 0)
......@@ -194,31 +194,31 @@ namespace AMDiS {
phi2[p] = new DOFVector<double>(getFeSpace(p), "phi2");
levelSet[p] = new DOFVector< double >(getFeSpace(p), "levelSet");
inStream.open(dofFilename.c_str());
switch (serType)
{
case 0:
calcspace::readR(inStream, eps,r[p], phi1[p], phi2[p],
levelSet[p], meshes[p]);
break;
case 1:
calcspace::readPhi1(inStream, eps, r[p], phi1[p], phi2[p],
levelSet[p], meshes[p]);
break;
case 2:
calcspace::readPhi2(inStream,eps, r[p], phi1[p], phi2[p],
levelSet[p], meshes[p]);
break;
default:
WARNING("unknown implicit mesh type\n");
switch (serType) {
case 0:
calcspace::readR(inStream, eps,r[p], phi1[p], phi2[p],
levelSet[p], meshes[p]);
break;
case 1:
calcspace::readPhi1(inStream, eps, r[p], phi1[p], phi2[p],
levelSet[p], meshes[p]);
break;
case 2:
calcspace::readPhi2(inStream,eps, r[p], phi1[p], phi2[p],
levelSet[p], meshes[p]);
break;
default:
WARNING("unknown implicit mesh type\n");
}
inStream.close();
return true;
}
void ProblemImplicitVec::initialize(Flag initFlag,
ProblemScal* adaptProblem, Flag adoptFlag)
{
FUNCNAME("ImplicitScal::initialize()");
FUNCNAME("ProblemImplicitVec::initialize()");
ProblemVec::initialize(CREATE_MESH);
createImplicitMesh();
initFlag = initFlag & ~CREATE_MESH;
......
AMDiS/src/ProblemImplicit.h
View file @ ec03ab8b
// ============================================================================
// == ==
// == AMDiS - Adaptive multidimensional simulations ==
// == ==
// ============================================================================
// == ==
// == TU Dresden ==
// == ==
// == Institut fr Wissenschaftliches Rechnen ==
// == Zellescher Weg 12-14 ==
// == 01069 Dresden ==
// == germany ==
// == ==
// ============================================================================
// == ==
// == https://gforge.zih.tu-dresden.de/projects/amdis/ ==
// == ==
// ============================================================================
/** \file ProblemImplicit.h */
#ifndef AMDIS_PROBLEMIMPLICIT_H
#define AMDIS_PROBLEMIMPLICIT_H
......@@ -8,7 +29,6 @@
namespace AMDiS {
class ProblemImplicitScal : public ProblemScal
{
public:
ProblemImplicitScal(std::string name, ProblemIterationInterface* pis = NULL)
: ProblemScal(name, pis),
......@@ -37,17 +57,17 @@ namespace AMDiS {
protected:
/// DOFVector for a signed distance
DOFVector< double > *r;
DOFVector<double> *r;
/// DOFVector for the phasefield function 0.5*(1-tanh(3*r/eps))
DOFVector< double > *phi1;
DOFVector<double> *phi1;
/// DOFVector for the phasefield function 0.5*(1+tanh(3*r/eps))
DOFVector< double > *phi2;
DOFVector<double> *phi2;
/// DOFVector for the levelset function
/// (levelSet(x): x \in \Omega: 1, x \not \in Omega: -1, x \in \Gamma: 0)
DOFVector< double > *levelSet;
DOFVector<double> *levelSet;
};
......@@ -61,27 +81,27 @@ namespace AMDiS {
phi1(0),
phi2(0),
levelSet(0)
{}
{}
virtual bool createImplicitMesh();
virtual void initialize(Flag initFlag, ProblemScal *adoptProblem=NULL,
Flag adoptFlag = INIT_NOTHING);
protected:
bool createImplicitMesh(int p);
/// DOFVector for a signed distance
std::vector< DOFVector< double >* > r;
std::vector<DOFVector<double>*> r;
/// DOFVector for the phasefield function 0.5*(1-tanh(3*r/eps))
std::vector< DOFVector< double >* > phi1;
std::vector<DOFVector<double>*> phi1;
/// DOFVector for the phasefield function 0.5*(1+tanh(3*r/eps))
std::vector< DOFVector< double >* > phi2;
std::vector<DOFVector<double>*> phi2;
/// DOFVector for the levelset function
/// (levelSet(x): x \in \Omega: 1, x \not \in Omega: -1, x \in \Gamma: 0)
std::vector< DOFVector< double >* > levelSet;
std::vector<DOFVector<double>*> levelSet;
};
}
......
AMDiS/src/ProblemInterpolScal.cc
View file @ ec03ab8b
......@@ -15,8 +15,9 @@ namespace AMDiS {
grdInterpolFct(grdFct)
{
Flag adoptFlag = INIT_SYSTEM | INIT_MESH | INIT_FE_SPACE;
Flag initFlag = INIT_ALL & ~adoptFlag & ~INIT_SOLVER & ~INIT_ESTIMATOR & ~CREATE_MESH & ~INIT_FILEWRITER;
if(initFlag.isSet(CREATE_MESH))
Flag initFlag = INIT_ALL & ~adoptFlag & ~INIT_SOLVER &
~INIT_ESTIMATOR & ~CREATE_MESH & ~INIT_FILEWRITER;
if (initFlag.isSet(CREATE_MESH))
WARNING("CREATE_MESH is set\n");
initialize(initFlag, spaceProblem, adoptFlag);
}
......
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