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Commit eec8781f authored by Thomas Witkowski's avatar Thomas Witkowski
Browse files

* Small bugfix of VtkWriter. writeFiles(const std::string) should now work.

parent d91a6d59
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Showing with 57 additions and 91 deletions
AMDiS/libtool
View file @ eec8781f
......@@ -30,10 +30,10 @@
# the same distribution terms that you use for the rest of that program.
# A sed program that does not truncate output.
SED="/bin/sed"
SED="/usr/bin/sed"
# Sed that helps us avoid accidentally triggering echo(1) options like -n.
Xsed="/bin/sed -e 1s/^X//"
Xsed="/usr/bin/sed -e 1s/^X//"
# The HP-UX ksh and POSIX shell print the target directory to stdout
# if CDPATH is set.
......@@ -44,7 +44,7 @@ available_tags=" CXX F77"
# ### BEGIN LIBTOOL CONFIG
# Libtool was configured on host NWRW15:
# Libtool was configured on host p1s060:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -66,12 +66,12 @@ fast_install=yes
# The host system.
host_alias=
host=i686-redhat-linux-gnu
host=x86_64-unknown-linux-gnu
host_os=linux-gnu
# The build system.
build_alias=
build=i686-redhat-linux-gnu
build=x86_64-unknown-linux-gnu
build_os=linux-gnu
# An echo program that does not interpret backslashes.
......@@ -82,25 +82,25 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
LTCC="gcc"
LTCC="icc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
# A language-specific compiler.
CC="gcc"
CC="icc"
# Is the compiler the GNU C compiler?
with_gcc=yes
gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'`
gcc_dir=`gcc -print-file-name=. | /usr/bin/sed 's,/\.$,,'`
gcc_ver=`gcc -dumpversion`
# An ERE matcher.
EGREP="grep -E"
# The linker used to build libraries.
LD="/usr/bin/ld"
LD="/usr/bin/ld -m elf_x86_64"
# Whether we need hard or soft links.
LN_S="ln -s"
......@@ -177,7 +177,7 @@ dlopen_self_static=unknown
link_static_flag="-static"
# Compiler flag to turn off builtin functions.
no_builtin_flag=" -fno-builtin"
no_builtin_flag=" -fno-builtin -fno-rtti -fno-exceptions"
# Compiler flag to allow reflexive dlopens.
export_dynamic_flag_spec="\${wl}--export-dynamic"
......@@ -328,10 +328,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec=`echo " /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
sys_lib_search_path_spec=`echo "/lib64 /usr/lib64 /usr/local/lib64" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib "
sys_lib_dlsearch_path_spec="/lib64 /usr/lib64 /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
......@@ -7266,7 +7266,7 @@ disable_libs=static
# End:
# ### BEGIN LIBTOOL TAG CONFIG: CXX
# Libtool was configured on host NWRW15:
# Libtool was configured on host p1s060:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -7288,12 +7288,12 @@ fast_install=yes
# The host system.
host_alias=
host=i686-redhat-linux-gnu
host=x86_64-unknown-linux-gnu
host_os=linux-gnu
# The build system.
build_alias=
build=i686-redhat-linux-gnu
build=x86_64-unknown-linux-gnu
build_os=linux-gnu
# An echo program that does not interpret backslashes.
......@@ -7304,25 +7304,25 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
LTCC="gcc"
LTCC="icc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
# A language-specific compiler.
CC="g++"
CC="icpc"
# Is the compiler the GNU C compiler?
with_gcc=yes
gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'`
gcc_dir=`gcc -print-file-name=. | /usr/bin/sed 's,/\.$,,'`
gcc_ver=`gcc -dumpversion`
# An ERE matcher.
EGREP="grep -E"
# The linker used to build libraries.
LD="/usr/bin/ld"
LD="/usr/bin/ld -m elf_x86_64"
# Whether we need hard or soft links.
LN_S="ln -s"
......@@ -7436,8 +7436,8 @@ old_archive_from_new_cmds=""
old_archive_from_expsyms_cmds=""
# Commands used to build and install a shared archive.
archive_cmds="\$CC -shared -nostdlib \$predep_objects \$libobjs \$deplibs \$postdep_objects \$compiler_flags \${wl}-soname \$wl\$soname -o \$lib"
archive_expsym_cmds="\$CC -shared -nostdlib \$predep_objects \$libobjs \$deplibs \$postdep_objects \$compiler_flags \${wl}-soname \$wl\$soname \${wl}-retain-symbols-file \$wl\$export_symbols -o \$lib"
archive_cmds="\$CC -shared \$libobjs \$deplibs \$compiler_flags \${wl}-soname \$wl\$soname -o \$lib"
archive_expsym_cmds="\$CC -shared \$libobjs \$deplibs \$compiler_flags \${wl}-soname \$wl\$soname \${wl}-retain-symbols-file \$wl\$export_symbols -o \$lib"
postinstall_cmds=""
postuninstall_cmds=""
......@@ -7451,11 +7451,11 @@ striplib="strip --strip-unneeded"
# Dependencies to place before the objects being linked to create a
# shared library.
predep_objects=`echo "/usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crti.o /usr/lib/gcc/i386-redhat-linux/4.1.2/crtbeginS.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
predep_objects=`echo "-mIPOPT_obj_output_file_name=/tmp/ipo_icpcNKAC6p.o -mGLOB_obj_output_file=/tmp/ipo_icpcNKAC6p.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Dependencies to place after the objects being linked to create a
# shared library.
postdep_objects=`echo "/usr/lib/gcc/i386-redhat-linux/4.1.2/crtendS.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crtn.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
postdep_objects=`echo "/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtbeginS.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtendS.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crtn.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Dependencies to place before the objects being linked to create a
# shared library.
......@@ -7463,11 +7463,11 @@ predeps=""
# Dependencies to place after the objects being linked to create a
# shared library.
postdeps="-lstdc++ -lm -lgcc_s -lc -lgcc_s"
postdeps="-L/work/licsoft/compilers/intel/cce/10.1.015/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/ -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -limf -lsvml -lm -lipgo -lstdc++ -lintlc -lgcc_s -lintlc -lc -lgcc_s -lirc_s -ldl -lc"
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path=`echo "-L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../.." | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
compiler_lib_search_path=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Method to check whether dependent libraries are shared objects.
deplibs_check_method="pass_all"
......@@ -7513,7 +7513,7 @@ hardcode_into_libs=yes
# Flag to hardcode $libdir into a binary during linking.
# This must work even if $libdir does not exist.
hardcode_libdir_flag_spec="\${wl}--rpath \${wl}\$libdir"
hardcode_libdir_flag_spec="\${wl}-rpath,\$libdir"
# If ld is used when linking, flag to hardcode $libdir into
# a binary during linking. This must work even if $libdir does
......@@ -7547,10 +7547,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec=`echo " /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
sys_lib_search_path_spec=`echo "/lib64 /usr/lib64 /usr/local/lib64" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib "
sys_lib_dlsearch_path_spec="/lib64 /usr/lib64 /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
......@@ -7574,7 +7574,7 @@ include_expsyms=""
# ### BEGIN LIBTOOL TAG CONFIG: F77
# Libtool was configured on host NWRW15:
# Libtool was configured on host p1s060:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -7596,12 +7596,12 @@ fast_install=yes
# The host system.
host_alias=
host=i686-redhat-linux-gnu
host=x86_64-unknown-linux-gnu
host_os=linux-gnu
# The build system.
build_alias=
build=i686-redhat-linux-gnu
build=x86_64-unknown-linux-gnu
build_os=linux-gnu
# An echo program that does not interpret backslashes.
......@@ -7612,7 +7612,7 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
LTCC="gcc"
LTCC="icc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
......@@ -7621,16 +7621,16 @@ LTCFLAGS="-g -O2"
CC="g77"
# Is the compiler the GNU C compiler?
with_gcc=yes
with_gcc=
gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'`
gcc_dir=`gcc -print-file-name=. | /usr/bin/sed 's,/\.$,,'`
gcc_ver=`gcc -dumpversion`
# An ERE matcher.
EGREP="grep -E"
# The linker used to build libraries.
LD="/usr/bin/ld"
LD="/usr/bin/ld -m elf_x86_64"
# Whether we need hard or soft links.
LN_S="ln -s"
......@@ -7858,10 +7858,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec=`echo " /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../ /lib/i386-redhat-linux/3.4.6/ /lib/ /usr/lib/i386-redhat-linux/3.4.6/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
sys_lib_search_path_spec=`echo "/lib64 /usr/lib64 /usr/local/lib64" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib "
sys_lib_dlsearch_path_spec="/lib64 /usr/lib64 /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
......
AMDiS/src/VtkWriter.cc
View file @ eec8781f
......@@ -11,7 +11,7 @@
namespace AMDiS {
int VtkWriter::writeFile(const std::string &name)
int VtkWriter::writeFile(const std::string name)
{
#ifdef HAVE_BOOST
......@@ -29,14 +29,14 @@ namespace AMDiS {
file.push(boost::iostreams::file_descriptor_sink(name));
break;
}
writeFile(file);
writeFileToStream(file);
#else
std::ofstream file;
file.open(name.c_str());
TEST_EXIT(file.is_open())("Cannot open file %s for writing\n", name.c_str());
writeFile(file);
writeFileToStream(file);
file.close();
#endif
......
AMDiS/src/VtkWriter.h
View file @ eec8781f
......@@ -49,7 +49,7 @@ namespace AMDiS {
/// Writes a ParaView-VTK file.
int writeFile(const std::string &name);
int writeFile(const std::string name);
/// May be used to simply write ParaView files.
static void writeFile(DOFVector<double> *values,
......@@ -65,62 +65,38 @@ namespace AMDiS {
std::vector< std::string > *paraViewAnimationFrames,
const std::string &animationFilename);
protected:
/** \brief
* Writes the VTU file to an arbitrary stream.
*/
/// Writes the VTK file to an arbitrary stream.
template<typename T>
void writeFile(T &file);
void writeFileToStream(T &file);
/** \brief
* Writes all coordinates of vertices and interpolation points to an
* output file.
*/
/// Writes all coordinates of vertices and interpolation points to an output file.
template<typename T>
void writeVertexCoords(T &file);
/** \brief
* Writes all values of vertices and interpolation point to an output
* file.
*/
/// Writes all values of vertices and interpolation point to an output file.
template<typename T>
void writeVertexValues(T &file, int componentNo);
/** \brief
* Writes the connectivity of all simplices to an output file.
*/
/// Writes the connectivity of all simplices to an output file.
template<typename T>
void writeConnectivity(T &file);
/** \brief
* Writes the connectivity for the case dim = 2 and degree = 2 to
* an output file.
*/
/// Writes the connectivity for the case dim = 2 and degree = 2 to an output file.
template<typename T>
void writeConnectivity_dim2_degree2(T &file);
/** \brief
* Writes the connectivity for the case dim = 2 and degree = 3 to
* an output file.
*/
/// Writes the connectivity for the case dim = 2 and degree = 3 to an output file.
template<typename T>
void writeConnectivity_dim2_degree3(T &file);
/** \brief
* Writes the connectivity for the case dim = 2 and degree = 4 to
* an output file.
*/
/// Writes the connectivity for the case dim = 2 and degree = 4 to an output file.
template<typename T>
void writeConnectivity_dim2_degree4(T &file);
#ifdef HAVE_BOOST
/** \brief
* Writes a world coordinate to a given file.
*/
inline void writeCoord(boost::iostreams::filtering_ostream &file, WorldVector<double> coord) {
/// Writes a world coordinate to a given file.
inline void writeCoord(boost::iostreams::filtering_ostream &file,
WorldVector<double> coord) {
for (int i = 0; i < Global::getGeo(WORLD); i++) {
file << " " << std::scientific << coord[i];
}
......@@ -131,9 +107,7 @@ namespace AMDiS {
}
#endif
/** \brief
* Writes a world coordinate to a given file.
*/
/// Writes a world coordinate to a given file.
inline void writeCoord(std::ofstream &file, WorldVector<double> coord) {
for (int i = 0; i < Global::getGeo(WORLD); i++) {
file << " " << std::scientific << coord[i];
......@@ -145,27 +119,19 @@ namespace AMDiS {
}
private:
/** \brief
* List of DataCollectors, for each component of the problem one.
*/
/// List of DataCollectors, for each component of the problem one.
std::vector<DataCollector*> *dataCollector;
/** \brief
* Defines if the file has to be compressed for ouput, and with which
* kind of compress method.
*/
FileCompression compress;
/** \brief
* Degree of the basis function of the problem.
*/
/// Degree of the basis function of the problem.
int degree;
/** \brief
* Dimension of the geometry.
*/
/// Dimension of the geometry.
int dim;
};
}
......
AMDiS/src/VtkWriter.hh
View file @ eec8781f
......@@ -5,7 +5,7 @@
namespace AMDiS {
template<typename T>
void VtkWriter::writeFile(T &file)
void VtkWriter::writeFileToStream(T &file)
{
int nVertices = (*dataCollector)[0]->getNumberVertices();
int nElements = (*dataCollector)[0]->getNumberElements();
......
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