Fixed small bug in mesh usage in coupled problems.

AMDiS/libtool

@@ -44,7 +44,7 @@ available_tags=" CXX F77"
 
 # ### BEGIN LIBTOOL CONFIG
 
-# Libtool was configured on host deimos103:
+# Libtool was configured on host deimos102:
 
 # Shell to use when invoking shell scripts.
 SHELL="/bin/sh"
@@ -82,13 +82,13 @@ AR="ar"
 AR_FLAGS="cru"
 
 # A C compiler.
-LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
+LTCC="gcc"
 
 # LTCC compiler flags.
 LTCFLAGS="-g -O2"
 
 # A language-specific compiler.
-CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
+CC="gcc"
 
 # Is the compiler the GNU C compiler?
 with_gcc=yes
@@ -171,7 +171,7 @@ dlopen_self=unknown
 dlopen_self_static=unknown
 
 # Compiler flag to prevent dynamic linking.
-link_static_flag=""
+link_static_flag="-static"
 
 # Compiler flag to turn off builtin functions.
 no_builtin_flag=" -fno-builtin"
@@ -7263,7 +7263,7 @@ disable_libs=static
 # End:
 # ### BEGIN LIBTOOL TAG CONFIG: CXX
 
-# Libtool was configured on host deimos103:
+# Libtool was configured on host deimos102:
 
 # Shell to use when invoking shell scripts.
 SHELL="/bin/sh"
@@ -7301,13 +7301,13 @@ AR="ar"
 AR_FLAGS="cru"
 
 # A C compiler.
-LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
+LTCC="gcc"
 
 # LTCC compiler flags.
 LTCFLAGS="-g -O2"
 
 # A language-specific compiler.
-CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicxx"
+CC="g++"
 
 # Is the compiler the GNU C compiler?
 with_gcc=yes
@@ -7390,7 +7390,7 @@ dlopen_self=unknown
 dlopen_self_static=unknown
 
 # Compiler flag to prevent dynamic linking.
-link_static_flag=""
+link_static_flag="-static"
 
 # Compiler flag to turn off builtin functions.
 no_builtin_flag=" -fno-builtin"
@@ -7457,11 +7457,11 @@ predeps=""
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdeps="-lmpi_cxx -lmpi -lopen-rte -lopen-pal -libverbs -lrt -lnuma -ldl -lnsl -lutil -ldl -lstdc++ -lm -lgcc_s -lpthread -lc -lgcc_s"
+postdeps="-lstdc++ -lm -lgcc_s -lc -lgcc_s"
 
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path="-L/usr/lib64 -L/licsoft/libraries/openmpi/1.2.6/64bit/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/fastfs/wir/local/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.."
+compiler_lib_search_path="-L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/fastfs/wir/local/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.."
 
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method="pass_all"
@@ -7568,7 +7568,7 @@ include_expsyms=""
 
 # ### BEGIN LIBTOOL TAG CONFIG: F77
 
-# Libtool was configured on host deimos103:
+# Libtool was configured on host deimos102:
 
 # Shell to use when invoking shell scripts.
 SHELL="/bin/sh"
@@ -7606,7 +7606,7 @@ AR="ar"
 AR_FLAGS="cru"
 
 # A C compiler.
-LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
+LTCC="gcc"
 
 # LTCC compiler flags.
 LTCFLAGS="-g -O2"

AMDiS/src/MacroReader.cc

@@ -247,9 +247,8 @@ namespace AMDiS {
       }
     }
 
-    if (!macroInfo->bound_set) {
-      macroInfo->dirichletBoundary();
-    }
+    if (!macroInfo->bound_set)
+      macroInfo->dirichletBoundary();    
   
     if (mesh->getDim() > 1)
       boundaryDOFs(mesh);

AMDiS/src/ProblemVec.cc

@@ -199,8 +199,7 @@ namespace AMDiS {
 
 	// Initialize the meshes if there is no serialization file.
 	for (int i = 0; i < static_cast<int>(meshes.size()); i++) {
-	  bool initMesh = initFlag.isSet(INIT_MESH) ||
-	    (adoptProblem && adoptFlag.isSet(INIT_MESH));
+	  bool initMesh = initFlag.isSet(INIT_MESH);
 
 	  if (initMesh && meshes[i] && !(meshes[i]->isInitialized()))
 	    meshes[i]->initialize();	    
@@ -220,8 +219,7 @@ namespace AMDiS {
 	// === do global refinements ===
 
 	for (unsigned int i = 0; i < meshes.size(); i++) {
-	  bool initMesh = initFlag.isSet(INIT_MESH) ||
-	    (adoptProblem && adoptFlag.isSet(INIT_MESH));
+	  bool initMesh = initFlag.isSet(INIT_MESH);
 
 	  if (initMesh && meshes[i])
 	    refinementManager->globalRefine(meshes[i], globalRefinements);