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Commit 039fe100 authored by Thomas Witkowski's avatar Thomas Witkowski
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Added files for InteriorBoundary, a class that defines a boundary within the... 

Added files for InteriorBoundary, a class that defines a boundary within the domain. This is used for domain decomposition parallelization.
parent d5c8e677
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Showing with 243 additions and 374 deletions
AMDiS/Makefile.in
View file @ 039fe100
......@@ -139,7 +139,6 @@ PACKAGE_TARNAME = @PACKAGE_TARNAME@
PACKAGE_VERSION = @PACKAGE_VERSION@
PATH_SEPARATOR = @PATH_SEPARATOR@
RANLIB = @RANLIB@
SED = @SED@
SET_MAKE = @SET_MAKE@
SHELL = @SHELL@
STRIP = @STRIP@
......
AMDiS/aclocal.m4
View file @ 039fe100
......@@ -1578,27 +1578,10 @@ linux*)
# before this can be enabled.
hardcode_into_libs=yes
# find out which ABI we are using
libsuff=
case "$host_cpu" in
x86_64*|s390x*|powerpc64*)
echo '[#]line __oline__ "configure"' > conftest.$ac_ext
if AC_TRY_EVAL(ac_compile); then
case `/usr/bin/file conftest.$ac_objext` in
*64-bit*)
libsuff=64
sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}"
;;
esac
fi
rm -rf conftest*
;;
esac
# Append ld.so.conf contents to the search path
if test -f /etc/ld.so.conf; then
lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra"
lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
fi
# We used to test for /lib/ld.so.1 and disable shared libraries on
......@@ -4305,9 +4288,6 @@ CC=$lt_[]_LT_AC_TAGVAR(compiler, $1)
# Is the compiler the GNU C compiler?
with_gcc=$_LT_AC_TAGVAR(GCC, $1)
gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\`
gcc_ver=\`gcc -dumpversion\`
# An ERE matcher.
EGREP=$lt_EGREP
......@@ -4441,11 +4421,11 @@ striplib=$lt_striplib
# Dependencies to place before the objects being linked to create a
# shared library.
predep_objects=\`echo $lt_[]_LT_AC_TAGVAR(predep_objects, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
predep_objects=$lt_[]_LT_AC_TAGVAR(predep_objects, $1)
# Dependencies to place after the objects being linked to create a
# shared library.
postdep_objects=\`echo $lt_[]_LT_AC_TAGVAR(postdep_objects, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
postdep_objects=$lt_[]_LT_AC_TAGVAR(postdep_objects, $1)
# Dependencies to place before the objects being linked to create a
# shared library.
......@@ -4457,7 +4437,7 @@ postdeps=$lt_[]_LT_AC_TAGVAR(postdeps, $1)
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path=\`echo $lt_[]_LT_AC_TAGVAR(compiler_lib_search_path, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
compiler_lib_search_path=$lt_[]_LT_AC_TAGVAR(compiler_lib_search_path, $1)
# Method to check whether dependent libraries are shared objects.
deplibs_check_method=$lt_deplibs_check_method
......@@ -4537,7 +4517,7 @@ variables_saved_for_relink="$variables_saved_for_relink"
link_all_deplibs=$_LT_AC_TAGVAR(link_all_deplibs, $1)
# Compile-time system search path for libraries
sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
......@@ -6373,7 +6353,6 @@ do
done
done
done
IFS=$as_save_IFS
lt_ac_max=0
lt_ac_count=0
# Add /usr/xpg4/bin/sed as it is typically found on Solaris
......@@ -6406,7 +6385,6 @@ for lt_ac_sed in $lt_ac_sed_list /usr/xpg4/bin/sed; do
done
])
SED=$lt_cv_path_SED
AC_SUBST([SED])
AC_MSG_RESULT([$SED])
])
......
AMDiS/bin/Makefile.am
View file @ 039fe100
......@@ -240,6 +240,7 @@ $(SOURCE_DIR)/OpenMP.h \
$(SOURCE_DIR)/ScalableQuadrature.h $(SOURCE_DIR)/ScalableQuadrature.cc \
$(SOURCE_DIR)/SubElInfo.h $(SOURCE_DIR)/SubElInfo.cc \
$(SOURCE_DIR)/SolutionDataStorage.h $(SOURCE_DIR)/SolutionDataStorage.hh \
$(SOURCE_DIR)/InteriorBoundary.h $(SOURCE_DIR)/InteriorBoundary.cc \
$(SOURCE_DIR)/parareal/ProblemBase.h \
$(SOURCE_DIR)/parareal/AdaptParaReal.h $(SOURCE_DIR)/parareal/AdaptParaReal.cc
......
AMDiS/bin/Makefile.in
View file @ 039fe100
......@@ -255,6 +255,8 @@ am__libamdis_la_SOURCES_DIST = $(PARALLEL_DIR)/ConditionalEstimator.h \
$(SOURCE_DIR)/ScalableQuadrature.cc $(SOURCE_DIR)/SubElInfo.h \
$(SOURCE_DIR)/SubElInfo.cc $(SOURCE_DIR)/SolutionDataStorage.h \
$(SOURCE_DIR)/SolutionDataStorage.hh \
$(SOURCE_DIR)/InteriorBoundary.h \
$(SOURCE_DIR)/InteriorBoundary.cc \
$(SOURCE_DIR)/parareal/ProblemBase.h \
$(SOURCE_DIR)/parareal/AdaptParaReal.h \
$(SOURCE_DIR)/parareal/AdaptParaReal.cc
......@@ -326,7 +328,7 @@ am_libamdis_la_OBJECTS = $(am__objects_1) \
libamdis_la-MemoryManager.lo libamdis_la-VtkWriter.lo \
libamdis_la-PngWriter.lo libamdis_la-DataCollector.lo \
libamdis_la-ScalableQuadrature.lo libamdis_la-SubElInfo.lo \
libamdis_la-AdaptParaReal.lo
libamdis_la-InteriorBoundary.lo libamdis_la-AdaptParaReal.lo
libamdis_la_OBJECTS = $(am_libamdis_la_OBJECTS)
libcompositeFEM_la_LIBADD =
am_libcompositeFEM_la_OBJECTS = libcompositeFEM_la-CFE_Integration.lo \
......@@ -433,7 +435,6 @@ PACKAGE_TARNAME = @PACKAGE_TARNAME@
PACKAGE_VERSION = @PACKAGE_VERSION@
PATH_SEPARATOR = @PATH_SEPARATOR@
RANLIB = @RANLIB@
SED = @SED@
SET_MAKE = @SET_MAKE@
SHELL = @SHELL@
STRIP = @STRIP@
......@@ -688,6 +689,7 @@ $(SOURCE_DIR)/OpenMP.h \
$(SOURCE_DIR)/ScalableQuadrature.h $(SOURCE_DIR)/ScalableQuadrature.cc \
$(SOURCE_DIR)/SubElInfo.h $(SOURCE_DIR)/SubElInfo.cc \
$(SOURCE_DIR)/SolutionDataStorage.h $(SOURCE_DIR)/SolutionDataStorage.hh \
$(SOURCE_DIR)/InteriorBoundary.h $(SOURCE_DIR)/InteriorBoundary.cc \
$(SOURCE_DIR)/parareal/ProblemBase.h \
$(SOURCE_DIR)/parareal/AdaptParaReal.h $(SOURCE_DIR)/parareal/AdaptParaReal.cc
......@@ -828,6 +830,7 @@ distclean-compile:
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-Global.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-ILUPreconditioner.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-ILUTPreconditioner.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-InteriorBoundary.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-InterpolRestrictMatrix.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-JacobiSmoother.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-Lagrange.Plo@am__quote@
......@@ -1695,6 +1698,13 @@ libamdis_la-SubElInfo.lo: $(SOURCE_DIR)/SubElInfo.cc
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -c -o libamdis_la-SubElInfo.lo `test -f '$(SOURCE_DIR)/SubElInfo.cc' || echo '$(srcdir)/'`$(SOURCE_DIR)/SubElInfo.cc
libamdis_la-InteriorBoundary.lo: $(SOURCE_DIR)/InteriorBoundary.cc
@am__fastdepCXX_TRUE@ if $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -MT libamdis_la-InteriorBoundary.lo -MD -MP -MF "$(DEPDIR)/libamdis_la-InteriorBoundary.Tpo" -c -o libamdis_la-InteriorBoundary.lo `test -f '$(SOURCE_DIR)/InteriorBoundary.cc' || echo '$(srcdir)/'`$(SOURCE_DIR)/InteriorBoundary.cc; \
@am__fastdepCXX_TRUE@ then mv -f "$(DEPDIR)/libamdis_la-InteriorBoundary.Tpo" "$(DEPDIR)/libamdis_la-InteriorBoundary.Plo"; else rm -f "$(DEPDIR)/libamdis_la-InteriorBoundary.Tpo"; exit 1; fi
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$(SOURCE_DIR)/InteriorBoundary.cc' object='libamdis_la-InteriorBoundary.lo' libtool=yes @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -c -o libamdis_la-InteriorBoundary.lo `test -f '$(SOURCE_DIR)/InteriorBoundary.cc' || echo '$(srcdir)/'`$(SOURCE_DIR)/InteriorBoundary.cc
libamdis_la-AdaptParaReal.lo: $(SOURCE_DIR)/parareal/AdaptParaReal.cc
@am__fastdepCXX_TRUE@ if $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -MT libamdis_la-AdaptParaReal.lo -MD -MP -MF "$(DEPDIR)/libamdis_la-AdaptParaReal.Tpo" -c -o libamdis_la-AdaptParaReal.lo `test -f '$(SOURCE_DIR)/parareal/AdaptParaReal.cc' || echo '$(srcdir)/'`$(SOURCE_DIR)/parareal/AdaptParaReal.cc; \
@am__fastdepCXX_TRUE@ then mv -f "$(DEPDIR)/libamdis_la-AdaptParaReal.Tpo" "$(DEPDIR)/libamdis_la-AdaptParaReal.Plo"; else rm -f "$(DEPDIR)/libamdis_la-AdaptParaReal.Tpo"; exit 1; fi
......
AMDiS/compositeFEM/src/ElementLevelSet.cc
View file @ 039fe100
......@@ -392,9 +392,9 @@ ElementLevelSet::calcIntersecNormal_3d(WorldVector<double> &normalVec)
int
ElementLevelSet::getVertexPos(const DimVec<double> barCoords)
{
double vertex_val;
double vertex_val = 0.0;
for (int i=0; i<=dim; ++i) {
for (int i = 0; i <= dim; ++i) {
if (barCoords[i] > 1-1.e-15) {
vertex_val = elVertexLevelSetVec[i];
break;
......@@ -403,8 +403,7 @@ ElementLevelSet::getVertexPos(const DimVec<double> barCoords)
if (vertex_val > 0) {
return LEVEL_SET_EXTERIOR;
}
else {
} else {
return LEVEL_SET_INTERIOR;
}
}
......
AMDiS/configure
View file @ 039fe100
This diff is collapsed.
AMDiS/libtool
View file @ 039fe100
......@@ -44,7 +44,7 @@ available_tags=" CXX F77"
# ### BEGIN LIBTOOL CONFIG
# Libtool was configured on host p2s118:
# Libtool was configured on host p1s046:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -93,9 +93,6 @@ CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# Is the compiler the GNU C compiler?
with_gcc=yes
gcc_dir=`gcc -print-file-name=. | /usr/bin/sed 's,/\.$,,'`
gcc_ver=`gcc -dumpversion`
# An ERE matcher.
EGREP="grep -E"
......@@ -232,11 +229,11 @@ striplib="strip --strip-unneeded"
# Dependencies to place before the objects being linked to create a
# shared library.
predep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
predep_objects=""
# Dependencies to place after the objects being linked to create a
# shared library.
postdep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
postdep_objects=""
# Dependencies to place before the objects being linked to create a
# shared library.
......@@ -248,7 +245,7 @@ postdeps=""
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
compiler_lib_search_path=""
# Method to check whether dependent libraries are shared objects.
deplibs_check_method="pass_all"
......@@ -328,10 +325,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec=`echo "/lib64 /usr/lib64 /usr/local/lib64" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
sys_lib_search_path_spec=" /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/"
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec="/lib64 /usr/lib64 /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
......@@ -6763,7 +6760,7 @@ build_old_libs=`case $build_libtool_libs in yes) $echo no;; *) $echo yes;; esac`
# End:
# ### BEGIN LIBTOOL TAG CONFIG: CXX
# Libtool was configured on host p2s118:
# Libtool was configured on host p1s046:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -6812,9 +6809,6 @@ CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpiCC"
# Is the compiler the GNU C compiler?
with_gcc=yes
gcc_dir=`gcc -print-file-name=. | /usr/bin/sed 's,/\.$,,'`
gcc_ver=`gcc -dumpversion`
# An ERE matcher.
EGREP="grep -E"
......@@ -6948,11 +6942,11 @@ striplib="strip --strip-unneeded"
# Dependencies to place before the objects being linked to create a
# shared library.
predep_objects=`echo "/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtbeginS.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
predep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtbeginS.o"
# Dependencies to place after the objects being linked to create a
# shared library.
postdep_objects=`echo "/usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtendS.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crtn.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
postdep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtendS.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crtn.o"
# Dependencies to place before the objects being linked to create a
# shared library.
......@@ -6964,7 +6958,7 @@ postdeps="-lmpi_cxx -lmpi -lopen-rte -lopen-pal -libverbs -lrt -lnuma -ldl -lnsl
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path=`echo "-L/usr/lib64 -L/licsoft/libraries/openmpi/1.2.6/64bit/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.." | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
compiler_lib_search_path="-L/usr/lib64 -L/licsoft/libraries/openmpi/1.2.6/64bit/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.."
# Method to check whether dependent libraries are shared objects.
deplibs_check_method="pass_all"
......@@ -7044,10 +7038,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec=`echo "/lib64 /usr/lib64 /usr/local/lib64" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
sys_lib_search_path_spec=" /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/"
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec="/lib64 /usr/lib64 /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
......@@ -7071,7 +7065,7 @@ include_expsyms=""
# ### BEGIN LIBTOOL TAG CONFIG: F77
# Libtool was configured on host p2s118:
# Libtool was configured on host p1s046:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -7120,9 +7114,6 @@ CC="g77"
# Is the compiler the GNU C compiler?
with_gcc=
gcc_dir=`gcc -print-file-name=. | /usr/bin/sed 's,/\.$,,'`
gcc_ver=`gcc -dumpversion`
# An ERE matcher.
EGREP="grep -E"
......@@ -7259,11 +7250,11 @@ striplib="strip --strip-unneeded"
# Dependencies to place before the objects being linked to create a
# shared library.
predep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
predep_objects=""
# Dependencies to place after the objects being linked to create a
# shared library.
postdep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
postdep_objects=""
# Dependencies to place before the objects being linked to create a
# shared library.
......@@ -7275,7 +7266,7 @@ postdeps=""
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
compiler_lib_search_path=""
# Method to check whether dependent libraries are shared objects.
deplibs_check_method="pass_all"
......@@ -7355,10 +7346,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec=`echo "/lib64 /usr/lib64 /usr/local/lib64" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
sys_lib_search_path_spec=" /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/ /usr/lib/gcc/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../ /lib/x86_64-suse-linux/3.3.5/ /lib/ /usr/lib/x86_64-suse-linux/3.3.5/ /usr/lib/"
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec="/lib64 /usr/lib64 /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
......
AMDiS/src/AMDiS.h
View file @ 039fe100
......@@ -44,6 +44,7 @@
#include "GMResSolver.h"
#include "Global.h"
#include "GridWriter.h"
#include "InteriorBoundary.h"
#include "Lagrange.h"
#include "LeafData.h"
#include "Line.h"
......
AMDiS/src/Boundary.h
View file @ 039fe100
......@@ -30,9 +30,7 @@ namespace AMDiS {
template<typename T> class WorldVector;
/** \brief
* Contains boundary constants
*/
/// Contains boundary constants
typedef enum {
INTERIOR = 0, /**< interior => no boundary (b = 0) */
DIRICHLET = 1, /**< dirichlet boundary (b > 0) */
......@@ -40,13 +38,11 @@ namespace AMDiS {
ROBIN = -100 /**< robin boundary (b <= -100) */
} BoundaryConstants;
/** \brief
* Type specifier for the different boundary types
*/
/// Type specifier for the different boundary types
typedef signed int BoundaryType;
BoundaryType newBound(BoundaryType oldBound, BoundaryType newBound);
}
#endif // !_Boundary_H_
#endif // _Boundary_H_
AMDiS/src/BoundaryManager.h
View file @ 039fe100
......@@ -65,7 +65,7 @@ namespace AMDiS {
TEST_EXIT(localBCs[type] == NULL)
("there is already a condition for this type\n");
localBCs[type] = localBC;
};
}
void initMatrix(DOFMatrix *matrix);
......@@ -97,15 +97,15 @@ namespace AMDiS {
inline BoundaryCondition *getBoundaryCondition(BoundaryType type) {
return localBCs[type];
};
}
const std::map<BoundaryType, BoundaryCondition*>& getBoundaryConditionMap() {
return localBCs;
};
}
void setBoundaryConditionMap(const std::map<BoundaryType, BoundaryCondition*>& bcs) {
localBCs = bcs;
};
}
protected:
/// Map of managed local boundary conditions.
......
AMDiS/src/Global.h
View file @ 039fe100
......@@ -65,58 +65,41 @@ namespace AMDiS {
// ===== definitions ==========================================================
// ============================================================================
/** \brief used by matrix vector multiplication */
/// used by matrix vector multiplication
typedef enum { NoTranspose,
Transpose,
ConjugateTranspose } MatrixTranspose;
/** \brief speciefies the norm used by Estimator. */
/// speciefies the norm used by Estimator.
typedef enum { NO_NORM = 0,
H1_NORM = 1,
L2_NORM = 2 } Norm;
/** \brief datatype for degrees of freedom */
/// datatype for degrees of freedom
typedef signed int DegreeOfFreedom;
/** \brief
* returns the GeoIndex of d for dimension dim.
*/
/// returns the GeoIndex of d for dimension dim.
#define INDEX_OF_DIM(d, dim) (static_cast<GeoIndex>((d == dim) ? CENTER : d + 1))
/** \brief
* returns the dimension of GeoIndex ind for dimension dim
*/
/// returns the dimension of GeoIndex ind for dimension dim
#define DIM_OF_INDEX(ind, dim) ((static_cast<int>(ind) == 0) ? dim : static_cast<int>(ind) - 1)
/** \brief
* Calculates factorial of i
*/
/// Calculates factorial of i
int fac(int i);
/** \brief
* Calculates the logaritmic error progression
*/
#define EOC(e,eo) log(eo/std::max(e,1.0e-15))/M_LN2
/** \brief
* Content comparision of two pointers. Used e.g. for std::find_if
*/
/// Content comparision of two pointers. Used e.g. for std::find_if
template<typename T>
struct comparePtrContents : public std::binary_function<T*, T*, bool>
{
/** \brief
* Overrides binary_function::operator()
*/
/// Overrides binary_function::operator()
bool operator()(T* a, T* b) const {
return (*a == *b);
};
}
};
// ===== some simple template functions ======================================
//template<typename T> T max(T a,T b ) {return ((a) > (b) ? (a) : (b));}
/// template<typename T> T max(T a,T b ) {return ((a) > (b) ? (a) : (b));}
template<typename T,typename S> inline T max(T a,S b )
{
return ((a) > (b) ? (a) : (b));
......@@ -169,121 +152,77 @@ namespace AMDiS {
class Msg
{
public:
/** \brief
* Prints a formated message to the message stream
*/
/// Prints a formated message to the message stream
static void print(const char *format, ...);
/** \brief
* Prints a formated message to the error stream
*/
/// Prints a formated message to the error stream
static void print_error(const char *format, ...);
/** \brief
* Prints a formated message to the error stream and exits
*/
/// Prints a formated message to the error stream and exits
static void print_error_exit(const char *format, ...);
/** \brief
*
*/
static void catch_error_exit(const char *format, ...) {};
///
static void catch_error_exit(const char *format, ...) {}
/** \brief
* Prints an error message with funcname, file, and line to the error stream
*/
/// Prints an error message with funcname, file, and line to the error stream
static void print_error_funcname(const char *funcname,
const char *file,
int line);
/** \brief
* Prints a warning to the message stream
*/
/// Prints a warning to the message stream
static void print_warn(const char *format, ...);
/** \brief
* Prints a warning with funcname, file, and line to the message stream
*/
/// Prints a warning with funcname, file, and line to the message stream
static void print_warn_funcname(const char *funcname,
const char *file,
int line);
/** \brief
* Prints the funcname to the message stream
*/
/// Prints the funcname to the message stream
static void print_funcname(const char *funcname);
/** \brief
* Changes the message stream
*/
/// Changes the message stream
static void change_out(std::ostream*);
/** \brief
* Creates a filestream and sets the message stream to this filestream
*/
/// Creates a filestream and sets the message stream to this filestream
static void open_file(const char *filename, OPENMODE);
/** \brief
* Changes the error stream
*/
/// Changes the error stream
static void change_error_out(std::ofstream *fp);
/** \brief
* Creates a filestream and sets the error stream to this filestream
*/
/// Creates a filestream and sets the error stream to this filestream
static void open_error_file(const char *filename, OPENMODE);
/** \brief
* Generates a filename from path, file and ntime
*/
/// Generates a filename from path, file and ntime
static const char *generate_filename(const char *path,
const char *file,
int ntime);
int ntime);
/** \brief
* Sets \ref msgInfo
*/
static void setMsgInfo(int info) { msgInfo = info; };
/// Sets \ref msgInfo
static void setMsgInfo(int info) { msgInfo = info; }
/** \brief
* Returns \ref msgInfo
*/
static int getMsgInfo() { return msgInfo; };
/// Returns \ref msgInfo
static int getMsgInfo() { return msgInfo; }
/** \brief
* Sets \ref msgWait
*/
static void setMsgWait(bool wait) { msgWait = wait; };
/// Sets \ref msgWait
static void setMsgWait(bool wait) { msgWait = wait; }
/** \brief
* Returns \ref msgWait
*/
static bool getMsgWait() { return msgWait; };
/// Returns \ref msgWait
static bool getMsgWait() { return msgWait; }
/** \brief
* Waits for enter if w is true
*/
/// Waits for enter if w is true
static void wait(bool w);
/** \brief
* Returns \ref out
*/
static std::ostream *getOutStream() { return out; };
/// Returns \ref out
static std::ostream *getOutStream() { return out; }
/** \brief
* Returns \ref error
*/
static std::ostream *getErrorStream() { return error; };
/// Returns \ref error
static std::ostream *getErrorStream() { return error; }
protected:
/** \brief
* Message stram
*/
/// Message stram
static std::ostream *out;
/** \brief
* Error stream
*/
/// Error stream
static std::ostream *error;
/** \brief
......@@ -292,14 +231,10 @@ namespace AMDiS {