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Commit 12648d7b authored by Thomas Witkowski's avatar Thomas Witkowski
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Some changes in source directory structure.

parent 21de23a7
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AMDiS/bin/Makefile.am
View file @ 12648d7b
......@@ -28,8 +28,8 @@ endif
if USE_PARALLEL_DOMAIN_AMDIS
PARALLEL_AMDIS_SOURCES += \
$(PARALLEL_DIR)/ParallelDomainBase.h $(PARALLEL_DIR)/ParallelDomainBase.cc \
$(PARALLEL_DIR)/ParallelDomainVec.h $(PARALLEL_DIR)/ParallelDomainVec.cc
$(SOURCE_DIR)/parallel/ParallelDomainBase.h $(SOURCE_DIR)/parallel/ParallelDomainBase.cc \
$(SOURCE_DIR)/parallel/ParallelDomainVec.h $(SOURCE_DIR)/parallel/ParallelDomainVec.cc
libamdis_la_CXXFLAGS += -DHAVE_PARALLEL_DOMAIN_AMDIS=1
AMDIS_INCLUDES += -I$(PETSC_DIR)/include -I$(PETSC_DIR)/$(PETSC_ARCH)/include
endif
......@@ -217,10 +217,7 @@ $(SOURCE_DIR)/SolutionDataStorage.h $(SOURCE_DIR)/SolutionDataStorage.hh \
$(SOURCE_DIR)/InteriorBoundary.h $(SOURCE_DIR)/InteriorBoundary.cc \
$(SOURCE_DIR)/ElementDofIteartor.h $(SOURCE_DIR)/ElementDofIterator.cc \
$(SOURCE_DIR)/Debug.h $(SOURCE_DIR)/Debug.cc \
$(SOURCE_DIR)/MpiHelper.h $(SOURCE_DIR)/MpiHelper.cc \
$(SOURCE_DIR)/parareal/ProblemBase.h \
$(SOURCE_DIR)/parareal/AdaptParaReal.h $(SOURCE_DIR)/parareal/AdaptParaReal.cc
$(SOURCE_DIR)/MpiHelper.h $(SOURCE_DIR)/MpiHelper.cc
COMPOSITE_SOURCE_DIR = ../compositeFEM/src
......
AMDiS/bin/Makefile.in
View file @ 12648d7b
......@@ -38,8 +38,8 @@ build_triplet = @build@
host_triplet = @host@
@USE_PARALLEL_AMDIS_TRUE@am__append_1 = -DHAVE_PARALLEL_AMDIS=1
@USE_PARALLEL_DOMAIN_AMDIS_TRUE@am__append_2 = \
@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ $(PARALLEL_DIR)/ParallelDomainBase.h $(PARALLEL_DIR)/ParallelDomainBase.cc \
@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ $(PARALLEL_DIR)/ParallelDomainVec.h $(PARALLEL_DIR)/ParallelDomainVec.cc
@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ $(SOURCE_DIR)/parallel/ParallelDomainBase.h $(SOURCE_DIR)/parallel/ParallelDomainBase.cc \
@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ $(SOURCE_DIR)/parallel/ParallelDomainVec.h $(SOURCE_DIR)/parallel/ParallelDomainVec.cc
@USE_PARALLEL_DOMAIN_AMDIS_TRUE@am__append_3 = -DHAVE_PARALLEL_DOMAIN_AMDIS=1
@USE_PARALLEL_DOMAIN_AMDIS_TRUE@am__append_4 = -I$(PETSC_DIR)/include -I$(PETSC_DIR)/$(PETSC_ARCH)/include
......@@ -72,10 +72,11 @@ am__installdirs = "$(DESTDIR)$(libdir)"
libLTLIBRARIES_INSTALL = $(INSTALL)
LTLIBRARIES = $(lib_LTLIBRARIES)
libamdis_la_LIBADD =
am__libamdis_la_SOURCES_DIST = $(PARALLEL_DIR)/ParallelDomainBase.h \
$(PARALLEL_DIR)/ParallelDomainBase.cc \
$(PARALLEL_DIR)/ParallelDomainVec.h \
$(PARALLEL_DIR)/ParallelDomainVec.cc \
am__libamdis_la_SOURCES_DIST = \
$(SOURCE_DIR)/parallel/ParallelDomainBase.h \
$(SOURCE_DIR)/parallel/ParallelDomainBase.cc \
$(SOURCE_DIR)/parallel/ParallelDomainVec.h \
$(SOURCE_DIR)/parallel/ParallelDomainVec.cc \
$(PARALLEL_DIR)/ConditionalEstimator.h \
$(PARALLEL_DIR)/ConditionalEstimator.cc \
$(PARALLEL_DIR)/ConditionalMarker.h \ \
......@@ -227,10 +228,7 @@ am__libamdis_la_SOURCES_DIST = $(PARALLEL_DIR)/ParallelDomainBase.h \
$(SOURCE_DIR)/ElementDofIteartor.h \
$(SOURCE_DIR)/ElementDofIterator.cc $(SOURCE_DIR)/Debug.h \
$(SOURCE_DIR)/Debug.cc $(SOURCE_DIR)/MpiHelper.h \
$(SOURCE_DIR)/MpiHelper.cc \
$(SOURCE_DIR)/parareal/ProblemBase.h \
$(SOURCE_DIR)/parareal/AdaptParaReal.h \
$(SOURCE_DIR)/parareal/AdaptParaReal.cc
$(SOURCE_DIR)/MpiHelper.cc
@USE_PARALLEL_DOMAIN_AMDIS_TRUE@am__objects_1 = libamdis_la-ParallelDomainBase.lo \
@USE_PARALLEL_DOMAIN_AMDIS_TRUE@ libamdis_la-ParallelDomainVec.lo
@USE_PARALLEL_AMDIS_FALSE@am__objects_2 = $(am__objects_1)
......@@ -293,7 +291,7 @@ am_libamdis_la_OBJECTS = $(am__objects_2) libamdis_la-DOFIndexed.lo \
libamdis_la-DataCollector.lo libamdis_la-ScalableQuadrature.lo \
libamdis_la-SubElInfo.lo libamdis_la-InteriorBoundary.lo \
libamdis_la-ElementDofIterator.lo libamdis_la-Debug.lo \
libamdis_la-MpiHelper.lo libamdis_la-AdaptParaReal.lo
libamdis_la-MpiHelper.lo
libamdis_la_OBJECTS = $(am_libamdis_la_OBJECTS)
libcompositeFEM_la_LIBADD =
am_libcompositeFEM_la_OBJECTS = libcompositeFEM_la-CFE_Integration.lo \
......@@ -633,9 +631,7 @@ $(SOURCE_DIR)/SolutionDataStorage.h $(SOURCE_DIR)/SolutionDataStorage.hh \
$(SOURCE_DIR)/InteriorBoundary.h $(SOURCE_DIR)/InteriorBoundary.cc \
$(SOURCE_DIR)/ElementDofIteartor.h $(SOURCE_DIR)/ElementDofIterator.cc \
$(SOURCE_DIR)/Debug.h $(SOURCE_DIR)/Debug.cc \
$(SOURCE_DIR)/MpiHelper.h $(SOURCE_DIR)/MpiHelper.cc \
$(SOURCE_DIR)/parareal/ProblemBase.h \
$(SOURCE_DIR)/parareal/AdaptParaReal.h $(SOURCE_DIR)/parareal/AdaptParaReal.cc
$(SOURCE_DIR)/MpiHelper.h $(SOURCE_DIR)/MpiHelper.cc
COMPOSITE_SOURCE_DIR = ../compositeFEM/src
libcompositeFEM_la_CXXFLAGS = $(libamdis_la_CXXFLAGS)
......@@ -732,7 +728,6 @@ distclean-compile:
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-AdaptBase.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-AdaptInfo.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-AdaptInstationary.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-AdaptParaReal.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-AdaptStationary.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-Assembler.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/libamdis_la-BasisFunction.Plo@am__quote@
......@@ -860,19 +855,19 @@ distclean-compile:
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(LTCXXCOMPILE) -c -o $@ $<
libamdis_la-ParallelDomainBase.lo: $(PARALLEL_DIR)/ParallelDomainBase.cc
@am__fastdepCXX_TRUE@ if $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -MT libamdis_la-ParallelDomainBase.lo -MD -MP -MF "$(DEPDIR)/libamdis_la-ParallelDomainBase.Tpo" -c -o libamdis_la-ParallelDomainBase.lo `test -f '$(PARALLEL_DIR)/ParallelDomainBase.cc' || echo '$(srcdir)/'`$(PARALLEL_DIR)/ParallelDomainBase.cc; \
libamdis_la-ParallelDomainBase.lo: $(SOURCE_DIR)/parallel/ParallelDomainBase.cc
@am__fastdepCXX_TRUE@ if $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -MT libamdis_la-ParallelDomainBase.lo -MD -MP -MF "$(DEPDIR)/libamdis_la-ParallelDomainBase.Tpo" -c -o libamdis_la-ParallelDomainBase.lo `test -f '$(SOURCE_DIR)/parallel/ParallelDomainBase.cc' || echo '$(srcdir)/'`$(SOURCE_DIR)/parallel/ParallelDomainBase.cc; \
@am__fastdepCXX_TRUE@ then mv -f "$(DEPDIR)/libamdis_la-ParallelDomainBase.Tpo" "$(DEPDIR)/libamdis_la-ParallelDomainBase.Plo"; else rm -f "$(DEPDIR)/libamdis_la-ParallelDomainBase.Tpo"; exit 1; fi
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$(PARALLEL_DIR)/ParallelDomainBase.cc' object='libamdis_la-ParallelDomainBase.lo' libtool=yes @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$(SOURCE_DIR)/parallel/ParallelDomainBase.cc' object='libamdis_la-ParallelDomainBase.lo' libtool=yes @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -c -o libamdis_la-ParallelDomainBase.lo `test -f '$(PARALLEL_DIR)/ParallelDomainBase.cc' || echo '$(srcdir)/'`$(PARALLEL_DIR)/ParallelDomainBase.cc
@am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -c -o libamdis_la-ParallelDomainBase.lo `test -f '$(SOURCE_DIR)/parallel/ParallelDomainBase.cc' || echo '$(srcdir)/'`$(SOURCE_DIR)/parallel/ParallelDomainBase.cc
libamdis_la-ParallelDomainVec.lo: $(PARALLEL_DIR)/ParallelDomainVec.cc
@am__fastdepCXX_TRUE@ if $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -MT libamdis_la-ParallelDomainVec.lo -MD -MP -MF "$(DEPDIR)/libamdis_la-ParallelDomainVec.Tpo" -c -o libamdis_la-ParallelDomainVec.lo `test -f '$(PARALLEL_DIR)/ParallelDomainVec.cc' || echo '$(srcdir)/'`$(PARALLEL_DIR)/ParallelDomainVec.cc; \
libamdis_la-ParallelDomainVec.lo: $(SOURCE_DIR)/parallel/ParallelDomainVec.cc
@am__fastdepCXX_TRUE@ if $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -MT libamdis_la-ParallelDomainVec.lo -MD -MP -MF "$(DEPDIR)/libamdis_la-ParallelDomainVec.Tpo" -c -o libamdis_la-ParallelDomainVec.lo `test -f '$(SOURCE_DIR)/parallel/ParallelDomainVec.cc' || echo '$(srcdir)/'`$(SOURCE_DIR)/parallel/ParallelDomainVec.cc; \
@am__fastdepCXX_TRUE@ then mv -f "$(DEPDIR)/libamdis_la-ParallelDomainVec.Tpo" "$(DEPDIR)/libamdis_la-ParallelDomainVec.Plo"; else rm -f "$(DEPDIR)/libamdis_la-ParallelDomainVec.Tpo"; exit 1; fi
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$(PARALLEL_DIR)/ParallelDomainVec.cc' object='libamdis_la-ParallelDomainVec.lo' libtool=yes @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$(SOURCE_DIR)/parallel/ParallelDomainVec.cc' object='libamdis_la-ParallelDomainVec.lo' libtool=yes @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -c -o libamdis_la-ParallelDomainVec.lo `test -f '$(PARALLEL_DIR)/ParallelDomainVec.cc' || echo '$(srcdir)/'`$(PARALLEL_DIR)/ParallelDomainVec.cc
@am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -c -o libamdis_la-ParallelDomainVec.lo `test -f '$(SOURCE_DIR)/parallel/ParallelDomainVec.cc' || echo '$(srcdir)/'`$(SOURCE_DIR)/parallel/ParallelDomainVec.cc
libamdis_la-ConditionalEstimator.lo: $(PARALLEL_DIR)/ConditionalEstimator.cc
@am__fastdepCXX_TRUE@ if $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -MT libamdis_la-ConditionalEstimator.lo -MD -MP -MF "$(DEPDIR)/libamdis_la-ConditionalEstimator.Tpo" -c -o libamdis_la-ConditionalEstimator.lo `test -f '$(PARALLEL_DIR)/ConditionalEstimator.cc' || echo '$(srcdir)/'`$(PARALLEL_DIR)/ConditionalEstimator.cc; \
......@@ -1553,13 +1548,6 @@ libamdis_la-MpiHelper.lo: $(SOURCE_DIR)/MpiHelper.cc
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -c -o libamdis_la-MpiHelper.lo `test -f '$(SOURCE_DIR)/MpiHelper.cc' || echo '$(srcdir)/'`$(SOURCE_DIR)/MpiHelper.cc
libamdis_la-AdaptParaReal.lo: $(SOURCE_DIR)/parareal/AdaptParaReal.cc
@am__fastdepCXX_TRUE@ if $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -MT libamdis_la-AdaptParaReal.lo -MD -MP -MF "$(DEPDIR)/libamdis_la-AdaptParaReal.Tpo" -c -o libamdis_la-AdaptParaReal.lo `test -f '$(SOURCE_DIR)/parareal/AdaptParaReal.cc' || echo '$(srcdir)/'`$(SOURCE_DIR)/parareal/AdaptParaReal.cc; \
@am__fastdepCXX_TRUE@ then mv -f "$(DEPDIR)/libamdis_la-AdaptParaReal.Tpo" "$(DEPDIR)/libamdis_la-AdaptParaReal.Plo"; else rm -f "$(DEPDIR)/libamdis_la-AdaptParaReal.Tpo"; exit 1; fi
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$(SOURCE_DIR)/parareal/AdaptParaReal.cc' object='libamdis_la-AdaptParaReal.lo' libtool=yes @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libamdis_la_CXXFLAGS) $(CXXFLAGS) -c -o libamdis_la-AdaptParaReal.lo `test -f '$(SOURCE_DIR)/parareal/AdaptParaReal.cc' || echo '$(srcdir)/'`$(SOURCE_DIR)/parareal/AdaptParaReal.cc
libcompositeFEM_la-CFE_Integration.lo: $(COMPOSITE_SOURCE_DIR)/CFE_Integration.cc
@am__fastdepCXX_TRUE@ if $(LIBTOOL) --tag=CXX --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(libcompositeFEM_la_CXXFLAGS) $(CXXFLAGS) -MT libcompositeFEM_la-CFE_Integration.lo -MD -MP -MF "$(DEPDIR)/libcompositeFEM_la-CFE_Integration.Tpo" -c -o libcompositeFEM_la-CFE_Integration.lo `test -f '$(COMPOSITE_SOURCE_DIR)/CFE_Integration.cc' || echo '$(srcdir)/'`$(COMPOSITE_SOURCE_DIR)/CFE_Integration.cc; \
@am__fastdepCXX_TRUE@ then mv -f "$(DEPDIR)/libcompositeFEM_la-CFE_Integration.Tpo" "$(DEPDIR)/libcompositeFEM_la-CFE_Integration.Plo"; else rm -f "$(DEPDIR)/libcompositeFEM_la-CFE_Integration.Tpo"; exit 1; fi
......
AMDiS/libtool
View file @ 12648d7b
......@@ -44,7 +44,7 @@ available_tags=" CXX F77"
# ### BEGIN LIBTOOL CONFIG
# Libtool was configured on host p1s122:
# Libtool was configured on host deimos103:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -82,13 +82,13 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
LTCC="gcc"
LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
# A language-specific compiler.
CC="gcc"
CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# Is the compiler the GNU C compiler?
with_gcc=yes
......@@ -171,7 +171,7 @@ dlopen_self=unknown
dlopen_self_static=unknown
# Compiler flag to prevent dynamic linking.
link_static_flag="-static"
link_static_flag=""
# Compiler flag to turn off builtin functions.
no_builtin_flag=" -fno-builtin"
......@@ -6760,7 +6760,7 @@ build_old_libs=`case $build_libtool_libs in yes) $echo no;; *) $echo yes;; esac`
# End:
# ### BEGIN LIBTOOL TAG CONFIG: CXX
# Libtool was configured on host p1s122:
# Libtool was configured on host deimos103:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -6798,13 +6798,13 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
LTCC="gcc"
LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
# A language-specific compiler.
CC="g++"
CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpiCC"
# Is the compiler the GNU C compiler?
with_gcc=yes
......@@ -6887,7 +6887,7 @@ dlopen_self=unknown
dlopen_self_static=unknown
# Compiler flag to prevent dynamic linking.
link_static_flag="-static"
link_static_flag=""
# Compiler flag to turn off builtin functions.
no_builtin_flag=" -fno-builtin"
......@@ -6954,11 +6954,11 @@ predeps=""
# Dependencies to place after the objects being linked to create a
# shared library.
postdeps="-lstdc++ -lm -lgcc_s -lc -lgcc_s"
postdeps="-lmpi_cxx -lmpi -lopen-rte -lopen-pal -libverbs -lrt -lnuma -ldl -lnsl -lutil -ldl -lstdc++ -lm -lgcc_s -lpthread -lc -lgcc_s"
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path="-L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.."
compiler_lib_search_path="-L/usr/lib64 -L/licsoft/libraries/openmpi/1.2.6/64bit/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.."
# Method to check whether dependent libraries are shared objects.
deplibs_check_method="pass_all"
......@@ -7065,7 +7065,7 @@ include_expsyms=""
# ### BEGIN LIBTOOL TAG CONFIG: F77
# Libtool was configured on host p1s122:
# Libtool was configured on host deimos103:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -7103,7 +7103,7 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
LTCC="gcc"
LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
......
AMDiS/src/DOFAdmin.cc 100755 → 100644
View file @ 12648d7b
File mode changed from 100755 to 100644
AMDiS/src/Estimator.cc 100755 → 100644
View file @ 12648d7b
File mode changed from 100755 to 100644
AMDiS/src/Estimator.h 100755 → 100644
View file @ 12648d7b
File mode changed from 100755 to 100644
AMDiS/src/parareal/AdaptParaReal.cc deleted 100644 → 0
View file @ 21de23a7
#include "parareal/ProblemBase.h"
#include "parareal/AdaptParaReal.h"
namespace AMDiS {
int AdaptParaReal::adapt()
{
// Compute number of coarse and fine time stages.
int coarseStages =
static_cast<int>(round(adaptInfo->getEndTime() / coarseTimestep));
int fineStages = static_cast<int>(round(coarseTimestep / fineTimestep));
// First, sequentially calculate first approximation on coarse time grid.
adaptInfo->setTimestep(coarseTimestep);
pararealProb->setStoreSolutions(false, true);
pararealProb->setStoreInitSolution(true);
pararealProb->setInitSolutionVec(NULL);
AdaptInstationary::adapt();
// ParaReal iterations
for (int k = 0; k < pararealIter; k++) {
// Compute solutions with fine timestep on the coarse grid slides.
for (int i = 0; i < coarseStages; i++) {
adaptInfo->resetTimeValues(fineTimestep,
i * coarseTimestep,
(i + 1) *coarseTimestep);
pararealProb->setStoreSolutions(true, false);
pararealProb->setStoreInitSolution(false);
pararealProb->setInitSolutionVec((*pararealProb->getCoarseSolutions())[i]);
pararealProb->cleanUp();
AdaptInstationary::adapt();
}
// Copy coarse grid solutions to another vector.
std::vector<DOFVector<double> *> coarseSolutions =
(*pararealProb->getCoarseSolutions());
pararealProb->clearCoarseSolutions();
(*pararealProb->getCoarseSolutions()).push_back(coarseSolutions[0]);
// Again, compute solutions on coarse grid and calculate the corrected solutions.
for (int i = 1; i <= coarseStages; i++) {
adaptInfo->resetTimeValues(coarseTimestep,
(i - 1) * coarseTimestep,
i * coarseTimestep);
pararealProb->setStoreSolutions(false, true);
pararealProb->setStoreInitSolution(false);
pararealProb->setInitSolutionVec((*pararealProb->getCoarseSolutions())[i - 1]);
AdaptInstationary::adapt();
DOFVector<double>* tmp = (*pararealProb->getCoarseSolutions())[i];
*tmp += *(*pararealProb->getFineSolutions())[(i * fineStages) - 1];
*tmp -= *(coarseSolutions[i]);
}
}
return 0;
}
}
AMDiS/src/parareal/AdaptParaReal.h deleted 100644 → 0
View file @ 21de23a7
// ============================================================================
// == ==
// == AMDiS - Adaptive multidimensional simulations ==
// == ==
// ============================================================================
// == ==
// == TU Dresden ==
// == ==
// == Institut fr Wissenschaftliches Rechnen ==
// == Zellescher Weg 12-14 ==
// == 01069 Dresden ==
// == germany ==
// == ==
// ============================================================================
// == ==
// == https://gforge.zih.tu-dresden.de/projects/amdis/ ==
// == ==
// ============================================================================
/** \file parareal/AdaptInfo.h */
#ifndef AMDIS_PARAREAL_ADAPTINFO_H
#define AMDIS_PARAREAL_ADAPTINFO_H
#include "AdaptInstationary.h"
#include "parareal/ProblemBase.h"
namespace AMDiS {
class AdaptParaReal : public AdaptInstationary
{
public:
AdaptParaReal(const char *name,
ProblemIterationInterface *problemStat,
AdaptInfo *info,
ProblemTimeInterface *problemInstat,
ParaRealProblemBase< DOFVector<double> > *paraProb,
AdaptInfo *initialInfo,
time_t initialTimestamp = 0)
: AdaptInstationary(name, problemStat, info, problemInstat, initialInfo, initialTimestamp),
coarseTimestep(0.0),
fineTimestep(0.0),
pararealIter(1),
pararealProb(paraProb)
{
GET_PARAMETER(0, static_cast<std::string>(name) + "->coarse timestep", "%f", &coarseTimestep);
GET_PARAMETER(0, static_cast<std::string>(name) + "->timestep", "%f", &fineTimestep);
GET_PARAMETER(0, static_cast<std::string>(name) + "->parareal iteration", "%d", &pararealIter);
TEST_EXIT(fineTimestep > 0.0)("fineTimestep must be greater than zero!\n");
TEST_EXIT(coarseTimestep > 0.0)("coarseTimestep must be greater than zero!\n");
TEST_EXIT(fineTimestep < coarseTimestep)("fineTimestep must be smaller than coarseTimestep!\n");
TEST_EXIT(pararealIter >= 0)("ParaReal Iterations must be >= 0!\n");
}
/** \brief
* Here, the parareal algorithm is executed.
*/
virtual int adapt();
protected:
/** \brief
* Timestep for the coarse time grid.
*/
double coarseTimestep;
/** \brief
* Timestep for the fine time grid.
*/
double fineTimestep;
/** \brief
* Number of parareal iterations.
*/
int pararealIter;
/** \brief
* Pointer to the parareal problem.
*/
ParaRealProblemBase< DOFVector<double> > *pararealProb;
};
}
#endif // AMDIS_PARAREAL_ADAPTINFO
AMDiS/src/parareal/ProblemBase.h deleted 100644 → 0
View file @ 21de23a7
// ============================================================================
// == ==
// == AMDiS - Adaptive multidimensional simulations ==
// == ==
// ============================================================================
// == ==
// == TU Dresden ==
// == ==
// == Institut fr Wissenschaftliches Rechnen ==
// == Zellescher Weg 12-14 ==
// == 01069 Dresden ==
// == germany ==
// == ==
// ============================================================================
// == ==
// == https://gforge.zih.tu-dresden.de/projects/amdis/ ==
// == ==
// ============================================================================
/** \file parareal/ProblemBase.h */
#ifndef AMDIS_PARAREAL_PROBLEMBASE_H
#define AMDIS_PARAREAL_PROBLEMBASE_H
#include <vector>
#include "CreatorInterface.h"
#include "DOFVector.h"
#include "SystemVector.h"
#include "ProblemInstat.h"
namespace AMDiS {
template<typename T>
class ParaRealProblemBase
{
public:
ParaRealProblemBase(CreatorInterface<T> *creator)
: storeFineSolutions(false),
storeCoarseSolutions(false),
vectorCreator(creator)
{
fineSolutions.clear();
coarseSolutions.clear();
}
virtual ~ParaRealProblemBase() {};
void storeSolution(T *vec)
{
if (storeFineSolutions) {
storeFineSolution(vec);
}
if (storeCoarseSolutions) {
storeCoarseSolution(vec);
}
}
void storeFineSolution(T *vec)
{
T *tmp = vectorCreator->create();
*tmp = *vec;
fineSolutions.push_back(tmp);
}
void storeCoarseSolution(T *vec)
{
T *tmp = vectorCreator->create();
*tmp = *vec;
coarseSolutions.push_back(tmp);
}
void setStoreSolutions(bool fine, bool coarse) {
storeFineSolutions = fine;
storeCoarseSolutions = coarse;
}
void setInitSolutionVec(T *vec) {
initSolutionVec = vec;
}
void setStoreInitSolution(bool store) {
storeInitSolution = store;
}
std::vector<T*> *getFineSolutions() {
return &fineSolutions;
}
std::vector<T*> *getCoarseSolutions() {
return &coarseSolutions;
}
void clearFineSolutions() {
fineSolutions.clear();
}
void clearCoarseSolutions() {
coarseSolutions.clear();
}
/** \brief
* This functions is called between switching from coarse
* time grid to fine time grid, or vice versa. Can be overwritten
* to clean up some data.
*/
virtual void cleanUp() {};
protected:
/** \brief
* Stores all solutions on the fine time grid.
*/
std::vector<T*> fineSolutions;
/** \brief
* Stores all solutions on the coarse time grid.
*/
std::vector<T*> coarseSolutions;
/** \brief
* If true, after closeTimestep() the solution is stored
* in vector \ref fineSolutions .
*/
bool storeFineSolutions;
/** \brief
* If true, after closeTimestep() the solution is stored
* in vector \ref coarseSolution .
*/
bool storeCoarseSolutions;
/** \brief
* If true, the initial solution is also stored in either
* \ref fineSolutions or in \ref coarseSolutions .
*/
bool storeInitSolution;
/** \brief
* Creator interface to create new vectors (either DOFVector or
* SystemVector).
*/
CreatorInterface<T> *vectorCreator;
/** \brief
* The initial solution for the problem can be set to this
* vector.
*/
T* initSolutionVec;
};
class ParaRealScal : public ProblemInstatScal,
public ParaRealProblemBase< DOFVector<double> >
{
public:
ParaRealScal(char* name,
ProblemScal *prob,
ProblemStatBase *initialProb = NULL)
: ProblemInstatScal(name, prob, initialProb),
ParaRealProblemBase< DOFVector<double> >(new DOFVector<double>::Creator(prob->getFESpace()))
{}
virtual void closeTimestep(AdaptInfo *adaptInfo) {
ProblemInstatScal::closeTimestep(adaptInfo);
storeSolution(problemStat->getSolution());
}
virtual void solveInitialProblem(AdaptInfo *adaptInfo) {
if (initSolutionVec == NULL) {
ProblemInstatScal::solveInitialProblem(adaptInfo);
} else {
*(problemStat->getSolution()) = *initSolutionVec;
}
if (storeInitSolution) {
storeSolution(problemStat->getSolution());
}
}
};
class ParaRealVec : public ProblemInstatVec,
public ParaRealProblemBase< SystemVector >
{
public:
ParaRealVec(char *name,
ProblemVec *prob,
ProblemStatBase *initialProb = NULL)
: ProblemInstatVec(name, prob, initialProb),
ParaRealProblemBase< SystemVector >(new SystemVector::Creator(name,
prob->getFESpaces(),
prob->getNumComponents()))
{}
virtual void closeTimestep(AdaptInfo *adaptInfo) {
ProblemInstatVec::closeTimestep(adaptInfo);
storeSolution(problemStat->getSolution());
}
virtual void solveInitialProblem(AdaptInfo *adaptInfo) {
if (initSolutionVec == NULL) {
ProblemInstatVec::solveInitialProblem(adaptInfo);
} else {
*(problemStat->getSolution()) = *initSolutionVec;
}
if (storeInitSolution) {
storeSolution(problemStat->getSolution());
}
}
};
}
#endif
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