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Commit 715b5139 authored by Thomas Witkowski's avatar Thomas Witkowski
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* Added ParallelProblem debug possibilities

parent cd501be4
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Showing with 662 additions and 865 deletions
AMDiS/libtool
View file @ 715b5139
......@@ -30,10 +30,10 @@
# the same distribution terms that you use for the rest of that program.
# A sed program that does not truncate output.
SED="/bin/sed"
SED="/usr/bin/sed"
# Sed that helps us avoid accidentally triggering echo(1) options like -n.
Xsed="/bin/sed -e 1s/^X//"
Xsed="/usr/bin/sed -e 1s/^X//"
# The HP-UX ksh and POSIX shell print the target directory to stdout
# if CDPATH is set.
......@@ -44,7 +44,7 @@ available_tags=" CXX F77"
# ### BEGIN LIBTOOL CONFIG
# Libtool was configured on host NWRW15:
# Libtool was configured on host p2s103:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -66,12 +66,12 @@ fast_install=yes
# The host system.
host_alias=
host=i686-redhat-linux-gnu
host=x86_64-unknown-linux-gnu
host_os=linux-gnu
# The build system.
build_alias=
build=i686-redhat-linux-gnu
build=x86_64-unknown-linux-gnu
build_os=linux-gnu
# An echo program that does not interpret backslashes.
......@@ -82,25 +82,25 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
LTCC="gcc"
LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
# A language-specific compiler.
CC="gcc"
CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# Is the compiler the GNU C compiler?
with_gcc=yes
gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'`
gcc_dir=`gcc -print-file-name=. | /usr/bin/sed 's,/\.$,,'`
gcc_ver=`gcc -dumpversion`
# An ERE matcher.
EGREP="grep -E"
# The linker used to build libraries.
LD="/usr/bin/ld"
LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
# Whether we need hard or soft links.
LN_S="ln -s"
......@@ -174,7 +174,7 @@ dlopen_self=unknown
dlopen_self_static=unknown
# Compiler flag to prevent dynamic linking.
link_static_flag="-static"
link_static_flag=""
# Compiler flag to turn off builtin functions.
no_builtin_flag=" -fno-builtin"
......@@ -328,10 +328,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec=`echo " /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
sys_lib_search_path_spec=`echo "/lib64 /usr/lib64 /usr/local/lib64" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib "
sys_lib_dlsearch_path_spec="/lib64 /usr/lib64 /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
......@@ -7266,7 +7266,7 @@ disable_libs=static
# End:
# ### BEGIN LIBTOOL TAG CONFIG: CXX
# Libtool was configured on host NWRW15:
# Libtool was configured on host p2s103:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -7288,12 +7288,12 @@ fast_install=yes
# The host system.
host_alias=
host=i686-redhat-linux-gnu
host=x86_64-unknown-linux-gnu
host_os=linux-gnu
# The build system.
build_alias=
build=i686-redhat-linux-gnu
build=x86_64-unknown-linux-gnu
build_os=linux-gnu
# An echo program that does not interpret backslashes.
......@@ -7304,25 +7304,25 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
LTCC="gcc"
LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
# A language-specific compiler.
CC="g++"
CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpiCC"
# Is the compiler the GNU C compiler?
with_gcc=yes
gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'`
gcc_dir=`gcc -print-file-name=. | /usr/bin/sed 's,/\.$,,'`
gcc_ver=`gcc -dumpversion`
# An ERE matcher.
EGREP="grep -E"
# The linker used to build libraries.
LD="/usr/bin/ld"
LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
# Whether we need hard or soft links.
LN_S="ln -s"
......@@ -7396,7 +7396,7 @@ dlopen_self=unknown
dlopen_self_static=unknown
# Compiler flag to prevent dynamic linking.
link_static_flag="-static"
link_static_flag=""
# Compiler flag to turn off builtin functions.
no_builtin_flag=" -fno-builtin"
......@@ -7451,11 +7451,11 @@ striplib="strip --strip-unneeded"
# Dependencies to place before the objects being linked to create a
# shared library.
predep_objects=`echo "/usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crti.o /usr/lib/gcc/i386-redhat-linux/4.1.2/crtbeginS.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
predep_objects=`echo "/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtbeginS.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Dependencies to place after the objects being linked to create a
# shared library.
postdep_objects=`echo "/usr/lib/gcc/i386-redhat-linux/4.1.2/crtendS.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crtn.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
postdep_objects=`echo "/usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtendS.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crtn.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Dependencies to place before the objects being linked to create a
# shared library.
......@@ -7463,11 +7463,11 @@ predeps=""
# Dependencies to place after the objects being linked to create a
# shared library.
postdeps="-lstdc++ -lm -lgcc_s -lc -lgcc_s"
postdeps="-lmpi_cxx -lmpi -lopen-rte -lopen-pal -libverbs -lrt -lnuma -ldl -lnsl -lutil -ldl -lstdc++ -lm -lgcc_s -lpthread -lc -lgcc_s"
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path=`echo "-L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../.." | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
compiler_lib_search_path=`echo "-L/usr/lib64 -L/licsoft/libraries/openmpi/1.2.6/64bit/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.." | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Method to check whether dependent libraries are shared objects.
deplibs_check_method="pass_all"
......@@ -7547,10 +7547,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec=`echo " /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
sys_lib_search_path_spec=`echo "/lib64 /usr/lib64 /usr/local/lib64" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib "
sys_lib_dlsearch_path_spec="/lib64 /usr/lib64 /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
......@@ -7574,7 +7574,7 @@ include_expsyms=""
# ### BEGIN LIBTOOL TAG CONFIG: F77
# Libtool was configured on host NWRW15:
# Libtool was configured on host p2s103:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -7596,12 +7596,12 @@ fast_install=yes
# The host system.
host_alias=
host=i686-redhat-linux-gnu
host=x86_64-unknown-linux-gnu
host_os=linux-gnu
# The build system.
build_alias=
build=i686-redhat-linux-gnu
build=x86_64-unknown-linux-gnu
build_os=linux-gnu
# An echo program that does not interpret backslashes.
......@@ -7612,7 +7612,7 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
LTCC="gcc"
LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
......@@ -7621,16 +7621,16 @@ LTCFLAGS="-g -O2"
CC="g77"
# Is the compiler the GNU C compiler?
with_gcc=yes
with_gcc=
gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'`
gcc_dir=`gcc -print-file-name=. | /usr/bin/sed 's,/\.$,,'`
gcc_ver=`gcc -dumpversion`
# An ERE matcher.
EGREP="grep -E"
# The linker used to build libraries.
LD="/usr/bin/ld"
LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
# Whether we need hard or soft links.
LN_S="ln -s"
......@@ -7858,10 +7858,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec=`echo " /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../ /lib/i386-redhat-linux/3.4.6/ /lib/ /usr/lib/i386-redhat-linux/3.4.6/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
sys_lib_search_path_spec=`echo "/lib64 /usr/lib64 /usr/local/lib64" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib "
sys_lib_dlsearch_path_spec="/lib64 /usr/lib64 /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
......
AMDiS/src/MeshStructure.cc
View file @ 715b5139
......@@ -14,14 +14,14 @@ namespace AMDiS {
void MeshStructure::insertElement(bool isLeaf) {
// overflow? -> next index
if(pos_ >= unsignedLongSize_) {
if (pos_ >= unsignedLongSize_) {
code_.push_back(currentCode_);
pos_ = 0;
currentCode_ = 0;
}
// insert element in binary code
if(!isLeaf) {
if (!isLeaf) {
unsigned long int one = 1;
currentCode_ += (one << pos_);
}
......@@ -44,7 +44,7 @@ namespace AMDiS {
clear();
TraverseStack stack;
ElInfo *elInfo = stack.traverseFirst(mesh, -1, Mesh::CALL_EVERY_EL_PREORDER);
while(elInfo) {
while (elInfo) {
insertElement(elInfo->getElement()->isLeaf());
elInfo = stack.traverseNext(elInfo);
}
......@@ -84,7 +84,7 @@ namespace AMDiS {
bool MeshStructure::skipBranch(MeshStructure *insert)
{
if(isLeafElement()) {
if (isLeafElement()) {
return nextElement(insert);
} else {
bool cont = nextElement(insert);
......@@ -104,13 +104,13 @@ namespace AMDiS {
structure2->reset();
bool cont = true;
while(cont) {
while (cont) {
bool cont1, cont2;
if(structure1->isLeafElement() == structure2->isLeafElement()) {
if (structure1->isLeafElement() == structure2->isLeafElement()) {
cont1 = structure1->nextElement(result);
cont2 = structure2->nextElement();
} else {
if(structure1->isLeafElement()) {
if (structure1->isLeafElement()) {
cont1 = structure1->nextElement();
cont2 = structure2->skipBranch(result);
} else {
......@@ -127,7 +127,8 @@ namespace AMDiS {
void MeshStructure::fitMeshToStructure(Mesh *mesh,
RefinementManager *manager,
bool checkPartition)
bool checkPartition,
bool debugMode)
{
FUNCNAME("MeshStructure::fitMeshToStructure()");
......@@ -140,32 +141,32 @@ namespace AMDiS {
// decorate leaf data
reset();
elInfo = stack.traverseFirst(mesh, -1, Mesh::CALL_EVERY_EL_PREORDER);
while(elInfo) {
while (elInfo) {
TEST_EXIT_DBG(cont)("unexpected structure code end!\n");
Element *element = elInfo->getElement();
if(isLeafElement()) {
if (isLeafElement()) {
TEST_EXIT_DBG(element->isLeaf())("mesh finer than code\n");
};
if(element->isLeaf() && !isLeafElement()) {
if (element->isLeaf() && !isLeafElement()) {
MeshStructure *structure = NEW MeshStructure();
cont = skipBranch(structure);
structure->commit();
bool decorate = true;
if(checkPartition) {
if (checkPartition) {
PartitionElementData *partitionData = dynamic_cast<PartitionElementData*>
(element->getElementData(PARTITION_ED));
TEST_EXIT_DBG(partitionData)("no partition element data\n");
PartitionStatus status = partitionData->getPartitionStatus();
if(status == OUT || status == UNDEFINED) {
if ((debugMode == false) && (status == OUT || status == UNDEFINED)) {
decorate = false;
}
}
if(decorate) {
if (decorate) {
MeshStructure_ED *elData = NEW MeshStructure_ED(element->getElementData());
elData->setStructure(structure);
element->setElementData(elData);
......@@ -185,9 +186,9 @@ namespace AMDiS {
do {
finished = true;
elInfo = stack.traverseFirst(mesh, -1, Mesh::CALL_LEAF_EL);
while(elInfo) {
while (elInfo) {
Element *element = elInfo->getElement();
if(element->getElementData(MESH_STRUCTURE) != NULL) {
if (element->getElementData(MESH_STRUCTURE) != NULL) {
element->setMark(1);
finished = false;
} else {
......@@ -196,7 +197,7 @@ namespace AMDiS {
elInfo = stack.traverseNext(elInfo);
}
manager->refineMesh(mesh);
} while(!finished);
} while (!finished);
}
}
AMDiS/src/MeshStructure.h
View file @ 715b5139
......@@ -46,11 +46,12 @@ namespace AMDiS {
void clear();
/** \brief
* Creates a mesh structure code from a Mesh object by traversing it in preorder.
*/
void init(Mesh *mesh);
void init(const std::vector<unsigned long int>& code,
int numElements)
{
void init(const std::vector<unsigned long int>& code, int numElements) {
code_ = code;
numElements_ = numElements;
reset();
......@@ -58,10 +59,8 @@ namespace AMDiS {
void reset();
void insertElement(bool isLeaf);
inline void commit() {
if(pos_ > 0) {
if (pos_ > 0) {
code_.push_back(currentCode_);
}
reset();
......@@ -77,25 +76,37 @@ namespace AMDiS {
return (currentCode_ & 1) == 0;
};
/** \brief
* Merges a mesh structure code with its own mesh structure code. The
* result overwrites the own mesh structure code.
*/
void merge(MeshStructure *structure) {
MeshStructure temp(*this);
merge(&temp, structure, this);
};
static void merge(MeshStructure *structure1,
MeshStructure *structure2,
MeshStructure *result);
/** \brief
* Fits a given mesh to the mesh structure code.
*
* \param debugMode In debugMode, the whole mesh is fitted to the mesh
* structure code. Otherwise, the mesh is fitted only on the partition
* of the current process.
*/
void fitMeshToStructure(Mesh *mesh,
RefinementManager *manager,
bool checkPartition = false);
bool checkPartition = false,
bool debugMode = false);
/** \brief
* Prints the mesh structure code.
*/
void print() {
FUNCNAME("MeshStructure::print()");
reset();
bool cont = true;
while(cont) {
if(isLeafElement()) {
while (cont) {
if (isLeafElement()) {
MSG("0");
} else {
MSG("1");
......@@ -105,6 +116,9 @@ namespace AMDiS {
MSG("\n");
};
/** \brief
* Returns the mesh structure code.
*/
inline const std::vector<unsigned long int>& getCode() {
return code_;
};
......@@ -117,6 +131,20 @@ namespace AMDiS {
return currentElement_;
};
protected:
/** \brief
* Insert a new element to the structure code. Is used by the init
* function.
*/
void insertElement(bool isLeaf);
/** \brief
* Merges two mesh structure codes to one structure code.
*/
void merge(MeshStructure *structure1,
MeshStructure *structure2,
MeshStructure *result);
protected:
std::vector<unsigned long int> code_;
......
AMDiS/src/ParallelProblem.cc
View file @ 715b5139
This diff is collapsed.
AMDiS/src/ParallelProblem.h
View file @ 715b5139
......@@ -42,6 +42,7 @@ namespace AMDiS {
class ParallelProblemInterface
{
public:
virtual ~ParallelProblemInterface() {};
virtual void initParallelization(AdaptInfo *adaptInfo) = 0;
virtual void exitParallelization(AdaptInfo *adaptInfo) = 0;
};
......@@ -63,17 +64,41 @@ namespace AMDiS {
virtual ~ParallelProblemBase() {};
/** \brief
* Must return true, if a new partitioning of the domain (due to unbalanced
* calculation times) have to be done.
*/
virtual bool doPartitioning(AdaptInfo *adaptInfo, double localWeightSum) = 0;
virtual bool doBuildGlobalSolution(AdaptInfo *adaptInfo) = 0;
virtual double setElemWeights(AdaptInfo *adaptInfo) = 0;
virtual void partitionMesh(AdaptInfo *adaptInfo) = 0;
virtual void refineOverlap(AdaptInfo *adaptInfo) = 0;
virtual void globalRefineOutOfPartition(AdaptInfo *adaptInfo) = 0;
virtual void createOverlap(AdaptInfo *adaptInfo) = 0;
virtual void exchangeDOFVectors(AdaptInfo *adaptInfo) = 0;
virtual void coarsenOutOfPartition(AdaptInfo *adaptInfo) = 0;
/** \brief
*
*/
virtual void synchronizeMeshes(AdaptInfo *adaptInfo) = 0;
/** \brief
*
*/
virtual void exchangeRankSolutions(AdaptInfo *adaptInfo) = 0;
/** \brief
*
*/
virtual void buildGlobalSolution(AdaptInfo *adaptInfo) = 0;
virtual void exitParallelization(AdaptInfo *adaptInfo)
......@@ -96,11 +121,12 @@ namespace AMDiS {
virtual void closeTimestep(AdaptInfo *adaptInfo)
{
if (mpiSize_ > 1 && doBuildGlobalSolution(adaptInfo)) {
synchronizeMeshes(adaptInfo);
if (mpiSize > 1 && doBuildGlobalSolution(adaptInfo)) {
synchronizeMeshes(adaptInfo);
exchangeRankSolutions(adaptInfo);
buildGlobalSolution(adaptInfo);
}
if (timeIF_)
timeIF_->closeTimestep(adaptInfo);
};
......@@ -127,12 +153,11 @@ namespace AMDiS {
{
Flag flag;
if(mpiSize_ > 1 && toDo.isSet(MARK | ADAPT)) {
if (mpiSize > 1 && toDo.isSet(MARK | ADAPT)) {
flag = iterationIF_->oneIteration(adaptInfo, MARK | ADAPT);
double localWeightSum = setElemWeights(adaptInfo);
if(doPartitioning(adaptInfo, localWeightSum)) {
if (doPartitioning(adaptInfo, localWeightSum)) {
clock_t partitioningStart = clock();
synchronizeMeshes(adaptInfo);
......@@ -155,31 +180,42 @@ namespace AMDiS {
}
// synchronize adaption flag
unsigned long *flagBuffer = GET_MEMORY(unsigned long, mpiSize_);
unsigned long *flagBuffer = GET_MEMORY(unsigned long, mpiSize);
unsigned long localFlag = flag.getFlags();
MPI::COMM_WORLD.Allgather(&localFlag, 1, MPI_UNSIGNED_LONG,
flagBuffer, 1, MPI_UNSIGNED_LONG);
int i;
for(i = 0; i < mpiSize_; i++) {
for (int i = 0; i < mpiSize; i++) {
flag.setFlag(flagBuffer[i]);
}
FREE_MEMORY(flagBuffer, unsigned long, mpiSize_);
FREE_MEMORY(flagBuffer, unsigned long, mpiSize);
return flag;
};
virtual void endIteration(AdaptInfo *adaptInfo)
{
virtual void endIteration(AdaptInfo *adaptInfo) {
iterationIF_->endIteration(adaptInfo);
};
virtual void startDelayedTimestepCalculation() {};
virtual bool existsDelayedCalculation() {
return false;
};
protected:
int mpiRank_;
int mpiSize_;
int mpiRank;
int mpiSize;
ProblemIterationInterface *iterationIF_;
ProblemTimeInterface *timeIF_;
clock_t computationStart;
double partitioningTime;
};
......@@ -220,7 +256,11 @@ namespace AMDiS {
virtual void globalRefinements();
/** \brief
*
*/
void exchangeRankSolutions(AdaptInfo *adaptInfo,
Mesh *workMesh,
std::vector<DOFVector<double>*> rankSolutions);
void exchangeDOFVector(AdaptInfo *adaptInfo,
......@@ -236,51 +276,61 @@ namespace AMDiS {
void fillVertexPartitions(int level, int overlap, bool openOverlap,
std::map<Element*, int> &overlapDistance);
void setRepartitionSteps(int steps) { repartitionSteps_ = steps; };
void setRepartitionSteps(int steps) {
repartitionSteps_ = steps;
};
void puEveryTimestep(bool pu) { puEveryTimestep_ = pu; };
void puEveryTimestep(bool pu) {
puEveryTimestep_ = pu;
};
void addDOFVector(DOFVector<double> *vec)
{
void addDOFVector(DOFVector<double> *vec) {
dofVectors_.push_back(vec);
};