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Commit 85fb5a1a authored by Thomas Witkowski's avatar Thomas Witkowski
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Small modification in GridWriter.

parent 4d67c011
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Showing with 274 additions and 148 deletions
AMDiS/Makefile.in
View file @ 85fb5a1a
......@@ -140,6 +140,7 @@ PACKAGE_VERSION = @PACKAGE_VERSION@
PATH_SEPARATOR = @PATH_SEPARATOR@
PETSC_DIR = @PETSC_DIR@
RANLIB = @RANLIB@
SED = @SED@
SET_MAKE = @SET_MAKE@
SHELL = @SHELL@
STRIP = @STRIP@
......
AMDiS/aclocal.m4
View file @ 85fb5a1a
......@@ -1578,10 +1578,27 @@ linux*)
# before this can be enabled.
hardcode_into_libs=yes
# find out which ABI we are using
libsuff=
case "$host_cpu" in
x86_64*|s390x*|powerpc64*)
echo '[#]line __oline__ "configure"' > conftest.$ac_ext
if AC_TRY_EVAL(ac_compile); then
case `/usr/bin/file conftest.$ac_objext` in
*64-bit*)
libsuff=64
sys_lib_search_path_spec="/lib${libsuff} /usr/lib${libsuff} /usr/local/lib${libsuff}"
;;
esac
fi
rm -rf conftest*
;;
esac
# Append ld.so.conf contents to the search path
if test -f /etc/ld.so.conf; then
lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra"
lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
sys_lib_dlsearch_path_spec="/lib${libsuff} /usr/lib${libsuff} $lt_ld_extra"
fi
# We used to test for /lib/ld.so.1 and disable shared libraries on
......@@ -4288,6 +4305,9 @@ CC=$lt_[]_LT_AC_TAGVAR(compiler, $1)
# Is the compiler the GNU C compiler?
with_gcc=$_LT_AC_TAGVAR(GCC, $1)
gcc_dir=\`gcc -print-file-name=. | $SED 's,/\.$,,'\`
gcc_ver=\`gcc -dumpversion\`
# An ERE matcher.
EGREP=$lt_EGREP
......@@ -4421,11 +4441,11 @@ striplib=$lt_striplib
# Dependencies to place before the objects being linked to create a
# shared library.
predep_objects=$lt_[]_LT_AC_TAGVAR(predep_objects, $1)
predep_objects=\`echo $lt_[]_LT_AC_TAGVAR(predep_objects, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
# Dependencies to place after the objects being linked to create a
# shared library.
postdep_objects=$lt_[]_LT_AC_TAGVAR(postdep_objects, $1)
postdep_objects=\`echo $lt_[]_LT_AC_TAGVAR(postdep_objects, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
# Dependencies to place before the objects being linked to create a
# shared library.
......@@ -4437,7 +4457,7 @@ postdeps=$lt_[]_LT_AC_TAGVAR(postdeps, $1)
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path=$lt_[]_LT_AC_TAGVAR(compiler_lib_search_path, $1)
compiler_lib_search_path=\`echo $lt_[]_LT_AC_TAGVAR(compiler_lib_search_path, $1) | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
# Method to check whether dependent libraries are shared objects.
deplibs_check_method=$lt_deplibs_check_method
......@@ -4517,7 +4537,7 @@ variables_saved_for_relink="$variables_saved_for_relink"
link_all_deplibs=$_LT_AC_TAGVAR(link_all_deplibs, $1)
# Compile-time system search path for libraries
sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
sys_lib_search_path_spec=\`echo $lt_sys_lib_search_path_spec | \$SED -e "s@\${gcc_dir}@\\\${gcc_dir}@g;s@\${gcc_ver}@\\\${gcc_ver}@g"\`
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
......@@ -6353,6 +6373,7 @@ do
done
done
done
IFS=$as_save_IFS
lt_ac_max=0
lt_ac_count=0
# Add /usr/xpg4/bin/sed as it is typically found on Solaris
......@@ -6385,6 +6406,7 @@ for lt_ac_sed in $lt_ac_sed_list /usr/xpg4/bin/sed; do
done
])
SED=$lt_cv_path_SED
AC_SUBST([SED])
AC_MSG_RESULT([$SED])
])
......
AMDiS/bin/Makefile.in
View file @ 85fb5a1a
......@@ -408,6 +408,7 @@ PACKAGE_VERSION = @PACKAGE_VERSION@
PATH_SEPARATOR = @PATH_SEPARATOR@
PETSC_DIR = @PETSC_DIR@
RANLIB = @RANLIB@
SED = @SED@
SET_MAKE = @SET_MAKE@
SHELL = @SHELL@
STRIP = @STRIP@
......
AMDiS/configure
View file @ 85fb5a1a
This diff is collapsed.
AMDiS/libtool
View file @ 85fb5a1a
......@@ -30,10 +30,10 @@
# the same distribution terms that you use for the rest of that program.
# A sed program that does not truncate output.
SED="/usr/bin/sed"
SED="/bin/sed"
# Sed that helps us avoid accidentally triggering echo(1) options like -n.
Xsed="/usr/bin/sed -e 1s/^X//"
Xsed="/bin/sed -e 1s/^X//"
# The HP-UX ksh and POSIX shell print the target directory to stdout
# if CDPATH is set.
......@@ -44,7 +44,7 @@ available_tags=" CXX F77"
# ### BEGIN LIBTOOL CONFIG
# Libtool was configured on host deimos102:
# Libtool was configured on host NWRW15:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -66,12 +66,12 @@ fast_install=yes
# The host system.
host_alias=
host=x86_64-unknown-linux-gnu
host=i686-pc-linux-gnu
host_os=linux-gnu
# The build system.
build_alias=
build=x86_64-unknown-linux-gnu
build=i686-pc-linux-gnu
build_os=linux-gnu
# An echo program that does not interpret backslashes.
......@@ -82,22 +82,25 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
LTCC="gcc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
# A language-specific compiler.
CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
CC="gcc"
# Is the compiler the GNU C compiler?
with_gcc=yes
gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'`
gcc_ver=`gcc -dumpversion`
# An ERE matcher.
EGREP="grep -E"
# The linker used to build libraries.
LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
LD="/usr/bin/ld"
# Whether we need hard or soft links.
LN_S="ln -s"
......@@ -171,7 +174,7 @@ dlopen_self=unknown
dlopen_self_static=unknown
# Compiler flag to prevent dynamic linking.
link_static_flag=""
link_static_flag="-static"
# Compiler flag to turn off builtin functions.
no_builtin_flag=" -fno-builtin"
......@@ -229,11 +232,11 @@ striplib="strip --strip-unneeded"
# Dependencies to place before the objects being linked to create a
# shared library.
predep_objects=""
predep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Dependencies to place after the objects being linked to create a
# shared library.
postdep_objects=""
postdep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Dependencies to place before the objects being linked to create a
# shared library.
......@@ -245,7 +248,7 @@ postdeps=""
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path=""
compiler_lib_search_path=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Method to check whether dependent libraries are shared objects.
deplibs_check_method="pass_all"
......@@ -325,10 +328,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec=" /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/"
sys_lib_search_path_spec=`echo " /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
......@@ -6760,7 +6763,7 @@ build_old_libs=`case $build_libtool_libs in yes) $echo no;; *) $echo yes;; esac`
# End:
# ### BEGIN LIBTOOL TAG CONFIG: CXX
# Libtool was configured on host deimos102:
# Libtool was configured on host NWRW15:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -6782,12 +6785,12 @@ fast_install=yes
# The host system.
host_alias=
host=x86_64-unknown-linux-gnu
host=i686-pc-linux-gnu
host_os=linux-gnu
# The build system.
build_alias=
build=x86_64-unknown-linux-gnu
build=i686-pc-linux-gnu
build_os=linux-gnu
# An echo program that does not interpret backslashes.
......@@ -6798,22 +6801,25 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
LTCC="gcc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
# A language-specific compiler.
CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpiCC"
CC="g++"
# Is the compiler the GNU C compiler?
with_gcc=yes
gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'`
gcc_ver=`gcc -dumpversion`
# An ERE matcher.
EGREP="grep -E"
# The linker used to build libraries.
LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
LD="/usr/bin/ld"
# Whether we need hard or soft links.
LN_S="ln -s"
......@@ -6887,7 +6893,7 @@ dlopen_self=unknown
dlopen_self_static=unknown
# Compiler flag to prevent dynamic linking.
link_static_flag=""
link_static_flag="-static"
# Compiler flag to turn off builtin functions.
no_builtin_flag=" -fno-builtin"
......@@ -6942,11 +6948,11 @@ striplib="strip --strip-unneeded"
# Dependencies to place before the objects being linked to create a
# shared library.
predep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtbeginS.o"
predep_objects=`echo "/usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crti.o /usr/lib/gcc/i386-redhat-linux/4.1.2/crtbeginS.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Dependencies to place after the objects being linked to create a
# shared library.
postdep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtendS.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crtn.o"
postdep_objects=`echo "/usr/lib/gcc/i386-redhat-linux/4.1.2/crtendS.o /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../crtn.o" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Dependencies to place before the objects being linked to create a
# shared library.
......@@ -6954,11 +6960,11 @@ predeps=""
# Dependencies to place after the objects being linked to create a
# shared library.
postdeps="-lmpi_cxx -lmpi -lopen-rte -lopen-pal -libverbs -lrt -lnuma -ldl -lnsl -lutil -ldl -lstdc++ -lm -lgcc_s -lpthread -lc -lgcc_s"
postdeps="-lstdc++ -lm -lgcc_s -lc -lgcc_s"
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path="-L/usr/lib64 -L/licsoft/libraries/openmpi/1.2.6/64bit/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.."
compiler_lib_search_path=`echo "-L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2 -L/usr/lib/gcc/i386-redhat-linux/4.1.2/../../.." | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Method to check whether dependent libraries are shared objects.
deplibs_check_method="pass_all"
......@@ -7038,10 +7044,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec=" /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/"
sys_lib_search_path_spec=`echo " /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../i386-redhat-linux/4.1.2/ /usr/lib/gcc/i386-redhat-linux/4.1.2/../../../ /lib/i386-redhat-linux/4.1.2/ /lib/ /usr/lib/i386-redhat-linux/4.1.2/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
......@@ -7065,7 +7071,7 @@ include_expsyms=""
# ### BEGIN LIBTOOL TAG CONFIG: F77
# Libtool was configured on host deimos102:
# Libtool was configured on host NWRW15:
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
......@@ -7087,12 +7093,12 @@ fast_install=yes
# The host system.
host_alias=
host=x86_64-unknown-linux-gnu
host=i686-pc-linux-gnu
host_os=linux-gnu
# The build system.
build_alias=
build=x86_64-unknown-linux-gnu
build=i686-pc-linux-gnu
build_os=linux-gnu
# An echo program that does not interpret backslashes.
......@@ -7103,7 +7109,7 @@ AR="ar"
AR_FLAGS="cru"
# A C compiler.
LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
LTCC="gcc"
# LTCC compiler flags.
LTCFLAGS="-g -O2"
......@@ -7112,13 +7118,16 @@ LTCFLAGS="-g -O2"
CC="g77"
# Is the compiler the GNU C compiler?
with_gcc=
with_gcc=yes
gcc_dir=`gcc -print-file-name=. | /bin/sed 's,/\.$,,'`
gcc_ver=`gcc -dumpversion`
# An ERE matcher.
EGREP="grep -E"
# The linker used to build libraries.
LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
LD="/usr/bin/ld"
# Whether we need hard or soft links.
LN_S="ln -s"
......@@ -7250,11 +7259,11 @@ striplib="strip --strip-unneeded"
# Dependencies to place before the objects being linked to create a
# shared library.
predep_objects=""
predep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Dependencies to place after the objects being linked to create a
# shared library.
postdep_objects=""
postdep_objects=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Dependencies to place before the objects being linked to create a
# shared library.
......@@ -7266,7 +7275,7 @@ postdeps=""
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path=""
compiler_lib_search_path=`echo "" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Method to check whether dependent libraries are shared objects.
deplibs_check_method="pass_all"
......@@ -7346,10 +7355,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs=unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec=" /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/ /usr/lib/gcc/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../ /lib/x86_64-suse-linux/3.3.5/ /lib/ /usr/lib/x86_64-suse-linux/3.3.5/ /usr/lib/"
sys_lib_search_path_spec=`echo " /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../i386-redhat-linux/lib/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../i386-redhat-linux/3.4.6/ /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../ /lib/i386-redhat-linux/3.4.6/ /lib/ /usr/lib/i386-redhat-linux/3.4.6/ /usr/lib/" | $SED -e "s@${gcc_dir}@\${gcc_dir}@g;s@${gcc_ver}@\${gcc_ver}@g"`
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/octave-2.9.9 /usr/lib/qt-3.3/lib /usr/lib/qt4/lib "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path=""
......
AMDiS/src/GridWriter.hh
View file @ 85fb5a1a
......@@ -9,22 +9,22 @@ namespace AMDiS {
template<typename T>
void GridWriter<T>::writeGrid(const WorldVector<double> *p,
int *numPoints,
double *dist,
DOFVector<T> *vec,
char* filename)
int *numPoints,
double *dist,
DOFVector<T> *vec,
char *filename)
{
FUNCNAME("GridWriter<T>::writeGrid()");
std::ofstream *outFile = new std::ofstream(filename);
TEST_EXIT(outFile)("can't open file %s\n", filename);
TEST_EXIT(vec)("no dof vector\n");
TEST_EXIT(filename)("no filename\n");
TEST_EXIT(vec->getFESpace()->getBasisFcts())("no basis fcts\n");
std::ofstream outFile = std::ofstream(filename);
const Mesh *mesh = vec->getFESpace()->getMesh();
int dim = mesh->getDim();
TEST_EXIT(dim == Global::getGeo(WORLD))
("not for DIM != DIM_OF_WORLD\n");
TEST_EXIT(dim == Global::getGeo(WORLD))("not for DIM != DIM_OF_WORLD\n");
WorldVector<double> *basis = new WorldVector<double>[dim];
double *lengthBasis = new double[dim];
......@@ -36,31 +36,22 @@ namespace AMDiS {
lengthBasis[i] = 0;
}
WorldVector<double> curCoord;
DimVec<double> bary(dim, NO_INIT);
Element *elp;
const BasisFunction *basFcts = NULL;
int inside;
double value;
const double *uhLoc;
WorldVector<double> curCoord;
DimVec<double> bary(dim, NO_INIT);
Element *elp;
const BasisFunction *basFcts = vec->getFESpace()->getBasisFcts();
const double *uhLoc;
TEST_EXIT(vec)("no dof vector\n");
TEST_EXIT(filename)("no filename\n");
TEST_EXIT(vec->getFESpace()->getBasisFcts())("no basis fcts\n");
mesh = vec->getFESpace()->getMesh();
basFcts = vec->getFESpace()->getBasisFcts();
/* get basis of grid */
// get basis of grid
for (int i = 0; i < dim; i++) {
for (int j = 0; j < dim; j++) {
basis[i][j] = p[i+1][j] - p[0][j];
basis[i][j] = p[i + 1][j] - p[0][j];
lengthBasis[i] += basis[i][j] * basis[i][j];
}
lengthBasis[i] = sqrt(lengthBasis[i]);
}
/* norm basis, get steps */
// norm basis, get steps
for (int i = 0; i < dim; i++) {
for (int j = 0; j < dim; j++) {
basis[i][j] /= lengthBasis[i];
......@@ -69,10 +60,9 @@ namespace AMDiS {
}
/* write grid points */
int localNumPoints[3] = {1, 1, 1};
for (int i = 0; i < dim; i++) {
localNumPoints[i] = numPoints[i];
}
int localNumPoints[3] = {1, 1, 1};
for (int i = 0; i < dim; i++)
localNumPoints[i] = numPoints[i];
// Warning "Coords not in mesh domain" should be printed at most one time.
bool warning = false;
......@@ -80,7 +70,7 @@ namespace AMDiS {
for (int i = 0; i < localNumPoints[0]; i++) {
for (int j = 0; j < localNumPoints[1]; j++) { // pseudo-loop for dim < 2
for (int k = 0; k < localNumPoints[2]; k++) { // pseudo-loop for dim < 3
/* clac current coords */
// clac current coords
for (int l = 0; l < dim; l++) {
curCoord[l] = p[0][l]
+ (i * step[0][l])
......@@ -88,42 +78,41 @@ namespace AMDiS {
+ (k * step[2][l]); // k = 0 for dim > 2
}
inside =
(const_cast<Mesh*>(mesh))->findElementAtPoint(curCoord,
&elp,
bary,
NULL, NULL, NULL);
int inside = (const_cast<Mesh*>(mesh))->findElementAtPoint(curCoord,
&elp,
bary,
NULL, NULL, NULL);
/* write coords */
for (int l = 0; l < dim; l++) {
(*outFile) << curCoord[l] << " ";
}
// write coords
for (int l = 0; l < dim; l++)
outFile << curCoord[l] << " ";
if (!inside) {
if (!warning) {
WARNING("Coords not in mesh domain\n");
warning = true;
}
/* write value */
(*outFile) << "0.0" << std::endl;
// write value
outFile << "0.0" << std::endl;
} else {
/* get value at coords */
// get value at coords
uhLoc = vec->getLocalVector(elp, NULL);
value = basFcts->evalUh(bary, uhLoc);
double value = basFcts->evalUh(bary, uhLoc);
/* write value */
(*outFile) << value << std::endl;
// write value
outFile << value << std::endl;
}
}
if (localNumPoints[2] > 1) (*outFile) << std::endl;
if (localNumPoints[2] > 1)
outFile << std::endl;
}
if (localNumPoints[1] > 1) (*outFile) << std::endl;
if (localNumPoints[1] > 1)
outFile << std::endl;
}
delete [] basis;
delete [] lengthBasis;
delete [] step;
delete outFile;
}
}
AMDiS/src/OEMSolver.h
View file @ 85fb5a1a
......@@ -128,12 +128,13 @@ namespace AMDiS {
int counter = 0;
DOFVector<double>::Iterator it_b(&b, USED_DOFS);
DOFVector<double>::Iterator it_x(&x, USED_DOFS);
for (it_b.reset(), it_x.reset(); !it_b.end(); ++it_b, ++it_x) {
bb[counter] = *it_b;
xx[counter] = *it_x;
counter++;
}
int r = solveSystem(A.getMatrix(), xx, bb);
// Copy solution vector to DOFVector
......
AMDiS/src/ProblemVec.cc
View file @ 85fb5a1a
......@@ -496,6 +496,7 @@ namespace AMDiS {
#endif
clock_t first = clock();
solver->solveSystem(solverMatrix, *solution, *rhs);
#ifdef _OPENMP
......
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