added test data creation programs

AMDiS/CMakeLists.txt

@@ -28,8 +28,7 @@ set(ENABLE_PARMETIS off)
 option(ENABLE_UMFPACK "use umfpack solver" false)
 option(ENABLE_MKL "use the mkl" false)
 SET(MKL_DIR "" CACHE PATH "MKL directory")
-#option(ENABLE_TESTS "compile the tests" false)
-SET(ENABLE_TESTS false)
+option(ENABLE_TESTS "compile the tests" false)
 
 if(ENABLE_INTEL)
 	Message("please set the icc manually")
@@ -233,6 +232,7 @@ if(ENABLE_UMFPACK)
 	INSTALL(FILES ${LIB_DIR}/AMD/Lib/libamd.a 
 		DESTINATION lib/amdis/amd/)
 	SET(RPM_DEPEND_STR "blas")
+	LIST(APPEND AMDiS_LIBS amdis blas amd umfpack)
 endif(ENABLE_UMFPACK)
 
 if(ENABLE_MKL)
@@ -254,7 +254,7 @@ include_directories(${SOURCE_DIR})
 add_library(amdis SHARED ${AMDIS_SRC} ${PARALLEL_DOMAIN_AMDIS_SRC})
 add_library(compositeFEM SHARED ${COMPOSITE_FEM_SRC})
 target_link_libraries(compositeFEM amdis)
-
+LIST(APPEND AMDiS_LIBS amdis boost_system boost_iostreams)
 if(WIN32)
 	SET(COMPILEFLAGS "${COMPILEFLAGS} -D_SCL_SECURE_NO_WARNINGS -D_CRT_SECURE_NO_WARNINGS")
 endif(WIN32)
@@ -329,8 +329,6 @@ set(CPACK_RPM_PACKAGE_REQUIRES "boost-devel >= 1.42, ${RPM_DEPEND_STR}")
 set(CPACK_DEBIAN_PACKAGE_DEPENDS "libboost-dev (>= 1.42)")
 include(CPack)
 if(ENABLE_TESTS)
-#ENABLE_TESTING()
-#add_test(demo_test run_test.sh)
-
-#add_test(demo_test ${CMAKE_CTEST_COMMAND} --build-and-test "${CMAKE_SOURCE_DIR}/test/demo_test" "${CMAKE_BINARY_DIR}/test/demo_test" --build-generator "${CMAKE_GENERATOR}" --build-makeprogram "${CMAKE_MAKE_PROGRAM}" "${CMAKE_BINARY_DIR}/test/demo_test")
+ENABLE_TESTING()
+add_subdirectory(test)
 endif(ENABLE_TESTS)

AMDiS/test/CMakeLists.txt

+project(tests)
+add_subdirectory(datacreation)

AMDiS/test/datacreation/CMakeLists.txt

+project(testdatacreation)
+  message("source-dir: ${AMDiS_SOURCE_DIR}")
+  include_directories(${AMDiS_SOURCE_DIR})
+  file(GLOB PROJECTFILES src/*Project.cpp)
+  foreach(projectfile ${PROJECTFILES})
+  	#create creatorname
+  	get_filename_component(CppName ${projectfile}, NAME_WE)
+  	string(REPLACE "Project" "" creatorsuffix ${CppName})
+	set(PROJECTINCLUDE "${CppName}.h")
+	configure_file(src/creator_base.cpp src/creator${creatorsuffix}.cpp @ONLY)
+  	add_executable(creator${creatorsuffix} src/creator${creatorsuffix}.cpp src/ProjectList.cpp ${projectfile})
+	target_link_libraries(creator${creatorsuffix} ${AMDiS_LIBS})
+  endforeach(projectfile)

AMDiS/test/datacreation/src/BallProject.cpp

+#include "BallProject.h"
+#include "AdaptStationary.h"
+/// Dirichlet boundary function
+class G : public AbstractFunction<double, WorldVector<double> >
+{
+public:
+  
+  /// Implementation of AbstractFunction::operator().
+  double operator()(const WorldVector<double>& x) const 
+  {
+    return exp(-10.0 * (x * x));
+  }
+};
+
+/// RHS function
+class F : public AbstractFunction<double, WorldVector<double> >
+{
+public:
+  F(int degree) : AbstractFunction<double, WorldVector<double> >(degree) {}
+
+  /// Implementation of AbstractFunction::operator().
+  double operator()(const WorldVector<double>& x) const 
+  {
+    int dim = x.getSize();
+    double r2 = x * x;
+    double ux = exp(-10.0*r2);
+    return -(400.0 * r2 - 20.0 * dim) * ux;
+  }
+};
+
+BallDemo::BallDemo():
+  ball("ball"),
+  ballCenter(NULL),
+  adaptInfo(NULL),
+  adapt(NULL),
+  matrixOperator(NULL),
+  rhsOperator(NULL)
+{
+}
+
+BallDemo::~BallDemo() {
+  if(matrixOperator != NULL)
+    delete matrixOperator;
+  if(rhsOperator != NULL)
+    delete rhsOperator;
+  if(ballCenter != NULL)
+    delete ballCenter;
+  if(adapt != NULL)
+    delete adapt;
+  if(adaptInfo != NULL)
+    delete adaptInfo;
+}
+
+void BallDemo::create(std::string& filename)  {
+  // ===== init parameters =====
+  Parameters::init(false, filename);
+  ballCenter = new WorldVector< double >();
+  ballCenter->set(0.0);
+
+  // ===== create projection =====
+  new AMDiS::BallProject(1, 
+		  BOUNDARY_PROJECTION, 
+		  *ballCenter, 
+		  1.0);
+
+  // ===== create and init the scalar problem ===== 
+  ball.initialize(INIT_ALL);
+
+  // === create adapt info ===
+  adaptInfo = new AdaptInfo("ball->adapt");
+
+  // === create adapt ===
+  adapt = new AdaptStationary("ball->adapt", &ball, adaptInfo);
+  
+  // ===== create matrix operator =====
+  matrixOperator=new Operator(ball.getFeSpace());
+  matrixOperator->addSecondOrderTerm(new Laplace_SOT);
+  ball.addMatrixOperator(matrixOperator);
+
+  // ===== create rhs operator =====
+  int degree = ball.getFeSpace()->getBasisFcts()->getDegree();
+  rhsOperator = new Operator(ball.getFeSpace());
+  rhsOperator->addZeroOrderTerm(new CoordsAtQP_ZOT(new F(degree)));
+  ball.addVectorOperator(rhsOperator);
+
+  // ===== add boundary conditions =====
+  ball.addDirichletBC(1, new G);
+
+
+}
+
+int BallDemo::solve(SolutionInformation& solinfo) {
+  assert(adaptInfo!=NULL);
+  assert(adapt!=NULL);
+  assert(matrixOperator!=NULL);
+  assert(rhsOperator!=NULL);
+
+  int retCode = adapt->adapt();
+  solinfo.dofVec = ball.getSolution();
+  return retCode;
+}
+
+void createProjectList(ProjectList& list) {
+  list.clear();
+
+  Project* demo = new BallDemo();
+  ProjectInfo ballInfo(demo, "init/ball.dat.2d", "../testdata/balldata_2d");
+  list.push_back(ballInfo);
+  ballInfo = ProjectInfo(demo, "init/ball.dat.3d", "../testdata/balldata_3d");
+  list.push_back(ballInfo);
+}

AMDiS/test/datacreation/src/BallProject.h

+#ifndef BALLPROJECT_H
+#define BALLPROJECT_H
+
+#include "Project.h"
+#include "FixVec.h"
+#include "ProblemScal.h"
+
+using namespace AMDiS;
+
+class BallDemo : public Project {
+  ProblemScal ball;
+  WorldVector< double >* ballCenter;
+  AdaptInfo* adaptInfo;
+  AdaptStationary* adapt;
+  Operator* matrixOperator;
+  Operator* rhsOperator;
+  public:
+    BallDemo() ;
+    ~BallDemo() ;
+    void create(std::string& ) ;
+    int solve(SolutionInformation&);
+
+};
+#endif

AMDiS/test/datacreation/src/BunnyProject.cpp

+#include "BunnyProject.h"
+#include "AdaptStationary.h"
+
+/// RHS function
+class F : public AbstractFunction<double, WorldVector<double> >
+{
+public:
+  F(int degree) : AbstractFunction<double, WorldVector<double> >(degree) {}
+
+  /// Implementation of AbstractFunction::operator().
+  double operator()(const WorldVector<double>& x) const 
+  {
+    return -2 * x[0];
+  }
+};
+
+/// boundary
+class G : public AbstractFunction<double, WorldVector<double> >
+{
+public:
+
+  /// Implementation of AbstractFunction::operator().
+  double operator()(const WorldVector<double>& x) const 
+  {
+    return 10000.0;
+  }
+};
+
+Bunnydemo::Bunnydemo():
+  bunny("bunny"),
+  ballCenter(NULL),
+  adaptInfo(NULL),
+  adapt(NULL),
+  matrixOperator(NULL),
+  rhsOperator(NULL)
+{}
+
+Bunnydemo::~Bunnydemo() {
+  if(ballCenter != NULL)
+    delete ballCenter;
+  if(adaptInfo != NULL)
+    delete adaptInfo;
+  if(adapt != NULL)
+    delete adapt;
+  if(matrixOperator != NULL)
+    delete matrixOperator;
+  if(rhsOperator != NULL)
+    delete rhsOperator;
+}
+
+void Bunnydemo::create(string filename) {
+   // ===== init parameters =====
+  Parameters::init(false, filename);
+
+  // ===== create projection =====
+  ballCenter = new WorldVector< double > ();
+  ballCenter->set(0.0);
+  new BallProject(1, VOLUME_PROJECTION, *ballCenter, 1.0);
+
+  // ===== create and init the scalar problem ===== 
+  bunny.initialize(INIT_ALL);
+
+  // === create adapt info ===
+  adaptInfo = new AdaptInfo("bunny->adapt");
+
+  // === create adapt ===
+  adapt = new AdaptStationary("bunny->adapt", &bunny, adaptInfo);
+  
+  // ===== create matrix operator =====
+  matrixOperator = new Operator(bunny.getFeSpace());
+  matrixOperator->addSecondOrderTerm(new Laplace_SOT);
+  bunny.addMatrixOperator(matrixOperator);
+
+  // ===== create rhs operator =====
+  rhsOperator = new Operator(bunny.getFeSpace());
+
+  int degree = bunny.getFeSpace()->getBasisFcts()->getDegree();
+
+  rhsOperator->addZeroOrderTerm(new CoordsAtQP_ZOT(new F(degree)));
+  bunny.addVectorOperator(rhsOperator);
+
+}
+
+int Bunnydemo::solve(SolutionInformation& info) {
+  int retCode = adapt->adapt();
+  info.dofVec = bunny.getSolution();
+  return retCode;
+}
+
+void createProjectList(ProjectList& list) {
+}

AMDiS/test/datacreation/src/BunnyProject.h

+#ifndef BUNNYPROJECT_H
+#define BUNNYPROJECT_H
+
+#include "Project.h"
+#include "FixVec.h"
+#include "ProblemScal.h"
+
+class Bunnydemo : public Project {
+  ProblemScal bunny;
+  WorldVector< double >* ballCenter;
+  AdaptInfo* adaptInfo;
+  AdaptStationary* adapt;
+  Operator* matrixOperator;
+  Operator* rhsOperator;
+
+  public:
+  Bunnydemo();
+  ~Bunnydemo();
+
+  void create(string filename);
+  int solve(SolutionInformation&);
+}; 
+#endif

AMDiS/test/datacreation/src/ElliptProject.cpp

+#include "ElliptProject.h"
+#include "AdaptStationary.h"
+/// Dirichlet boundary function
+class G : public AbstractFunction<double, WorldVector<double> >
+{
+public:
+
+  /// Implementation of AbstractFunction::operator().
+  double operator()(const WorldVector<double>& x) const 
+  {
+    return exp(-10.0 * (x * x));
+  }
+};
+
+/// RHS function
+class F : public AbstractFunction<double, WorldVector<double> >
+{
+public:
+
+  F(int degree) : AbstractFunction<double, WorldVector<double> >(degree) {}
+
+  /// Implementation of AbstractFunction::operator().
+  double operator()(const WorldVector<double>& x) const 
+  {
+    int dow = x.getSize();
+    double r2 = (x * x);
+    double ux = exp(-10.0 * r2);
+    return -(400.0 * r2 - 20.0 * dow) * ux;
+  }
+};
+
+Elliptdemo::Elliptdemo():
+  ellipt("ellipt"),
+  adaptInfo(NULL),
+  adapt(NULL),
+  matrixOperator(NULL),
+  rhsOperator(NULL)
+{}
+
+Elliptdemo::~Elliptdemo() {
+  if(matrixOperator != NULL)
+    delete matrixOperator;
+  if(rhsOperator != NULL)
+    delete rhsOperator;
+  if(adapt != NULL)
+    delete adapt;
+  if(adaptInfo != NULL)
+    delete adaptInfo;
+}
+
+void Elliptdemo::create(std::string filename) {
+    // ===== init parameters =====
+  Parameters::init(true, filename);
+
+
+  // ===== create and init the scalar problem ===== 
+  ellipt.initialize(INIT_ALL);
+
+
+  // === create adapt info ===
+  adaptInfo = new AdaptInfo("ellipt->adapt");
+
+
+  // === create adapt ===
+  adapt = new AdaptStationary("ellipt->adapt", &ellipt, adaptInfo);
+
+  
+  // ===== create matrix operator =====
+  matrixOperator = new Operator(ellipt.getFeSpace());
+  matrixOperator->addSecondOrderTerm(new Laplace_SOT);
+  ellipt.addMatrixOperator(matrixOperator);
+
+
+  // ===== create rhs operator =====
+  int degree = ellipt.getFeSpace()->getBasisFcts()->getDegree();
+  rhsOperator = new Operator(ellipt.getFeSpace());
+  rhsOperator->addZeroOrderTerm(new CoordsAtQP_ZOT(new F(degree)));
+  ellipt.addVectorOperator(rhsOperator);
+
+
+  // ===== add boundary conditions =====
+  ellipt.addDirichletBC(1, new G);
+
+
+}
+
+int Elliptdemo::solve(SolutionInformation& info) {
+  int retCode = adapt->adapt();
+  info.dofVec = ellipt.getSolution();
+  return retCode;
+}
+
+void createProjectList(ProjectList& list) {
+}

AMDiS/test/datacreation/src/ElliptProject.h

+#ifndef ELLIPTPROJECT_H
+#define ELLIPTPROJECT_H
+
+#include "Project.h"
+#include "ProblemScal.h"
+
+class Elliptdemo : public Project {
+  ProblemScal ellipt;
+  AdaptInfo* adaptInfo;
+  AdaptStationary* adapt;
+  Operator* matrixOperator;
+  Operator* rhsOperator;
+
+  public:
+  Elliptdemo();
+  ~Elliptdemo();
+
+  void create(std::string filename);
+  int solve(SolutionInformation& info);
+};
+#endif

AMDiS/test/datacreation/src/HeatProject.cpp

+#include "HeatProject.h"
+#include "TimedObject.h"
+
+/// Dirichlet boundary function
+class G : public AbstractFunction<double, WorldVector<double> >,
+	  public TimedObject
+{
+public:
+  
+  /// Implementation of AbstractFunction::operator().
+  double operator()(const WorldVector<double>& x) const 
+  {
+    return sin(M_PI * (*timePtr)) * exp(-10.0 * (x * x));
+  }
+};
+
+/// RHS function
+class F : public AbstractFunction<double, WorldVector<double> >,
+	  public TimedObject
+{
+public:
+  F(int degree) : AbstractFunction<double, WorldVector<double> >(degree) {}
+
+  /// Implementation of AbstractFunction::operator().
+  double operator()(const WorldVector<double>& x) const 
+  {
+    int dim = x.getSize();
+    double r2 = x * x;
+    double ux = sin(M_PI * (*timePtr)) * exp(-10.0 * r2);
+    double ut = M_PI * cos(M_PI * (*timePtr)) * exp(-10.0 * r2);
+    return ut -(400.0 * r2 - 20.0 * dim) * ux;
+  }
+};
+
+Heatdemo::Heatdemo():
+  heatSpace("heat->space"),
+  heat(heatSpace),
+  adaptInfo(NULL),
+  adaptInfoInitial(NULL),
+  A(NULL),
+  C(NULL),
+  Fop(NULL)
+{}
+
+Heatdemo::~Heatdemo() {
+  if(adaptInfo != NULL)
+    delete adaptInfo;
+  if(adaptInfoInitial != NULL)
+    delete adaptInfoInitial;
+
+  if(A != NULL)
+    delete A;
+  if(C != NULL)
+    delete C;
+  if(Fop != NULL)
+    delete Fop;
+}
+
+void Heatdemo::create(string filename) {
+    // ===== init parameters =====
+  Parameters::init(false, filename);
+//  Parameters::readArgv(argc, argv);
+
+
+  // ===== create and init stationary problem =====
+  heatSpace.initialize(INIT_ALL);
+
+
+  // ===== create instationary problem =====
+  heat.initialize(INIT_ALL);
+
+  // create adapt info
+  adaptInfo = new AdaptInfo("heat->adapt");
+
+  // create initial adapt info
+  adaptInfoInitial = new AdaptInfo("heat->initial->adapt");
+
+  // create instationary adapt
+  adaptInstat = new AdaptInstationary("heat->adapt",
+				&heatSpace,
+				adaptInfo,
+				&heat,
+				adaptInfoInitial);
+
+
+  // ===== create rhs functions =====
+  int degree = heatSpace.getFeSpace()->getBasisFcts()->getDegree();
+  F *rhsFct = new F(degree);
+  rhsFct->setTimePtr(heat.getRHSTimePtr());
+
+
+  // ===== create operators =====
+  double one = 1.0;
+  double zero = 0.0;
+
+  // create laplace
+  A = new Operator(heatSpace.getFeSpace());
+  A->addSecondOrderTerm(new Laplace_SOT);
+  A->setUhOld(heat.getOldSolution());
+  if (*(heat.getThetaPtr()) != 0.0)
+    heatSpace.addMatrixOperator(A, heat.getThetaPtr(), &one);
+  if (*(heat.getTheta1Ptr()) != 0.0)
+    heatSpace.addVectorOperator(A, heat.getTheta1Ptr(), &zero);
+
+  // create zero order operator
+  C = new Operator(heatSpace.getFeSpace());
+  C->addZeroOrderTerm(new Simple_ZOT);
+  C->setUhOld(heat.getOldSolution());
+  heatSpace.addMatrixOperator(C, heat.getTau1Ptr(), heat.getTau1Ptr());
+  heatSpace.addVectorOperator(C, heat.getTau1Ptr(), heat.getTau1Ptr());
+
+  // create RHS operator
+  Fop = new Operator(heatSpace.getFeSpace());
+  Fop->addZeroOrderTerm(new CoordsAtQP_ZOT(rhsFct));
+  heatSpace.addVectorOperator(Fop);
+
+
+  // ===== create boundary functions =====
+  G *boundaryFct = new G;
+  boundaryFct->setTimePtr(heat.getBoundaryTimePtr());
+  heat.setExactSolution(boundaryFct);
+
+}
+
+int Heatdemo::solve(SolutionInformation& info) {
+  int retCode = adaptInstat->adapt();
+  info.dofVec = heatSpace.getSolution();
+  return retCode;
+}
+
+void createProjectList(ProjectList& list) {
+}

AMDiS/test/datacreation/src/HeatProject.h

+#ifndef HEATPROJECT_H
+#define HEATPROJECT_H
+
+#include "Project.h"
+
+#include "ProblemScal.h"
+#include "ProblemInstat.h"
+
+#include "HeatProject.hh"
+class Heatdemo : public Project {
+  ProblemScal heatSpace;
+  Heat heat;
+  AdaptInfo* adaptInfo;
+  AdaptInfo* adaptInfoInitial;
+  AdaptInstationary* adaptInstat;
+  Operator* A;
+  Operator* C;
+  Operator* Fop;
+
+  public:
+  Heatdemo();
+  ~Heatdemo();
+
+  void create(string filename);
+  int solve(SolutionInformation& info);
+
+};
+#endif

AMDiS/test/datacreation/src/HeatProject.hh

+// ===========================================================================
+// ===== instationary problem ================================================
+// ===========================================================================
+
+/// Instationary problem
+class Heat : public ProblemInstatScal
+{
+public:
+  Heat(ProblemScal &heatSpace)
+    : ProblemInstatScal("heat", heatSpace)
+  {
+    // init theta scheme
+    theta = -1.0;
+    GET_PARAMETER(0, name + "->theta", "%f", &theta);