AssembleMatrixOnlyOnce+OpenMP - error solved

AMDiS/libtool

-#! /bin/sh
+#! /bin/bash
 
 # libtoolT - Provide generalized library-building support services.
 # Generated automatically by  (GNU AMDiS 0.1)
@@ -30,10 +30,10 @@
 # the same distribution terms that you use for the rest of that program.
 
 # A sed program that does not truncate output.
-SED="/usr/bin/sed"
+SED="/bin/sed"
 
 # Sed that helps us avoid accidentally triggering echo(1) options like -n.
-Xsed="/usr/bin/sed -e 1s/^X//"
+Xsed="/bin/sed -e 1s/^X//"
 
 # The HP-UX ksh and POSIX shell print the target directory to stdout
 # if CDPATH is set.
@@ -44,10 +44,10 @@ available_tags=" CXX F77"
 
 # ### BEGIN LIBTOOL CONFIG
 
-# Libtool was configured on host deimos104:
+# Libtool was configured on host laptop:
 
 # Shell to use when invoking shell scripts.
-SHELL="/bin/sh"
+SHELL="/bin/bash"
 
 # Whether or not to build shared libraries.
 build_libtool_libs=yes
@@ -66,12 +66,12 @@ fast_install=yes
 
 # The host system.
 host_alias=
-host=x86_64-unknown-linux-gnu
+host=i686-pc-linux-gnu
 host_os=linux-gnu
 
 # The build system.
 build_alias=
-build=x86_64-unknown-linux-gnu
+build=i686-pc-linux-gnu
 build_os=linux-gnu
 
 # An echo program that does not interpret backslashes.
@@ -82,13 +82,13 @@ AR="ar"
 AR_FLAGS="cru"
 
 # A C compiler.
-LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
+LTCC="gcc"
 
 # LTCC compiler flags.
 LTCFLAGS="-g -O2"
 
 # A language-specific compiler.
-CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
+CC="gcc"
 
 # Is the compiler the GNU C compiler?
 with_gcc=yes
@@ -97,7 +97,7 @@ with_gcc=yes
 EGREP="grep -E"
 
 # The linker used to build libraries.
-LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
+LD="/usr/bin/ld"
 
 # Whether we need hard or soft links.
 LN_S="ln -s"
@@ -171,7 +171,7 @@ dlopen_self=unknown
 dlopen_self_static=unknown
 
 # Compiler flag to prevent dynamic linking.
-link_static_flag=""
+link_static_flag="-static"
 
 # Compiler flag to turn off builtin functions.
 no_builtin_flag=" -fno-builtin"
@@ -325,10 +325,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
 link_all_deplibs=unknown
 
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=" /fastfs/wir/local/lib/x86_64-suse-linux/4.1.2/ /fastfs/wir/local/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /fastfs/wir/local/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/"
+sys_lib_search_path_spec=" =./i486-linux-gnu/4.4.3/ ./../lib/ /opt/petsc/lib/i486-linux-gnu/4.4.3/ /opt/petsc/lib/../lib/ /usr/lib/gcc/i486-linux-gnu/4.4.3/ /usr/lib/gcc/i486-linux-gnu/4.4.3/ /usr/lib/gcc/i486-linux-gnu/4.4.3/../../../../i486-linux-gnu/lib/i486-linux-gnu/4.4.3/ /usr/lib/gcc/i486-linux-gnu/4.4.3/../../../../i486-linux-gnu/lib/../lib/ /usr/lib/gcc/i486-linux-gnu/4.4.3/../../../i486-linux-gnu/4.4.3/ /usr/lib/gcc/i486-linux-gnu/4.4.3/../../../../lib/ /lib/i486-linux-gnu/4.4.3/ /lib/../lib/ /usr/lib/i486-linux-gnu/4.4.3/ /usr/lib/../lib/ /usr/lib/i486-linux-gnu/i486-linux-gnu/4.4.3/ /usr/lib/i486-linux-gnu/../lib/ ./ /opt/petsc/lib/ /usr/lib/gcc/i486-linux-gnu/4.4.3/../../../../i486-linux-gnu/lib/ /usr/lib/gcc/i486-linux-gnu/4.4.3/../../../ /lib/ /usr/lib/ /usr/lib/i486-linux-gnu/"
 
 # Run-time system search path for libraries
-sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
+sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/nvidia-current /usr/lib/atlas /opt/cuda/lib /lib/i486-linux-gnu /usr/lib/i486-linux-gnu /opt/kde3/lib/ /usr/lib/alsa-lib /usr/local/lib "
 
 # Fix the shell variable $srcfile for the compiler.
 fix_srcfile_path=""
@@ -7263,10 +7263,10 @@ disable_libs=static
 # End:
 # ### BEGIN LIBTOOL TAG CONFIG: CXX
 
-# Libtool was configured on host deimos104:
+# Libtool was configured on host laptop:
 
 # Shell to use when invoking shell scripts.
-SHELL="/bin/sh"
+SHELL="/bin/bash"
 
 # Whether or not to build shared libraries.
 build_libtool_libs=yes
@@ -7285,12 +7285,12 @@ fast_install=yes
 
 # The host system.
 host_alias=
-host=x86_64-unknown-linux-gnu
+host=i686-pc-linux-gnu
 host_os=linux-gnu
 
 # The build system.
 build_alias=
-build=x86_64-unknown-linux-gnu
+build=i686-pc-linux-gnu
 build_os=linux-gnu
 
 # An echo program that does not interpret backslashes.
@@ -7301,13 +7301,13 @@ AR="ar"
 AR_FLAGS="cru"
 
 # A C compiler.
-LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
+LTCC="gcc"
 
 # LTCC compiler flags.
 LTCFLAGS="-g -O2"
 
 # A language-specific compiler.
-CC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicxx"
+CC="g++"
 
 # Is the compiler the GNU C compiler?
 with_gcc=yes
@@ -7316,7 +7316,7 @@ with_gcc=yes
 EGREP="grep -E"
 
 # The linker used to build libraries.
-LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
+LD="/usr/bin/ld"
 
 # Whether we need hard or soft links.
 LN_S="ln -s"
@@ -7390,7 +7390,7 @@ dlopen_self=unknown
 dlopen_self_static=unknown
 
 # Compiler flag to prevent dynamic linking.
-link_static_flag=""
+link_static_flag="-static"
 
 # Compiler flag to turn off builtin functions.
 no_builtin_flag=" -fno-builtin"
@@ -7445,11 +7445,11 @@ striplib="strip --strip-unneeded"
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
-predep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtbeginS.o"
+predep_objects="/usr/lib/gcc/i486-linux-gnu/4.4.3/../../../../lib/crti.o /usr/lib/gcc/i486-linux-gnu/4.4.3/crtbeginS.o"
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdep_objects="/usr/lib64/gcc/x86_64-suse-linux/4.1.2/crtendS.o /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/crtn.o"
+postdep_objects="/usr/lib/gcc/i486-linux-gnu/4.4.3/crtendS.o /usr/lib/gcc/i486-linux-gnu/4.4.3/../../../../lib/crtn.o"
 
 # Dependencies to place before the objects being linked to create a
 # shared library.
@@ -7457,11 +7457,11 @@ predeps=""
 
 # Dependencies to place after the objects being linked to create a
 # shared library.
-postdeps="-lmpi_cxx -lmpi -lopen-rte -lopen-pal -libverbs -lrt -lnuma -ldl -lnsl -lutil -ldl -lstdc++ -lm -lgcc_s -lpthread -lc -lgcc_s"
+postdeps="-lstdc++ -lm -lgcc_s -lc -lgcc_s"
 
 # The library search path used internally by the compiler when linking
 # a shared library.
-compiler_lib_search_path="-L/usr/lib64 -L/licsoft/libraries/openmpi/1.2.6/64bit/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2 -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/fastfs/wir/local/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../.."
+compiler_lib_search_path="-L/opt/petsc/lib/../lib -L/usr/lib/gcc/i486-linux-gnu/4.4.3 -L/usr/lib/gcc/i486-linux-gnu/4.4.3 -L/usr/lib/gcc/i486-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L. -L/opt/petsc/lib -L/usr/lib/gcc/i486-linux-gnu/4.4.3/../../.. -L/usr/lib/i486-linux-gnu"
 
 # Method to check whether dependent libraries are shared objects.
 deplibs_check_method="pass_all"
@@ -7541,10 +7541,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
 link_all_deplibs=unknown
 
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=" /fastfs/wir/local/lib/x86_64-suse-linux/4.1.2/ /fastfs/wir/local/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/ /usr/lib/gcc/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../x86_64-suse-linux/4.1.2/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /fastfs/wir/local/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../ /lib/ /usr/lib/"
+sys_lib_search_path_spec=" =./i486-linux-gnu/4.4.3/ ./../lib/ /opt/petsc/lib/i486-linux-gnu/4.4.3/ /opt/petsc/lib/../lib/ /usr/lib/gcc/i486-linux-gnu/4.4.3/ /usr/lib/gcc/i486-linux-gnu/4.4.3/ /usr/lib/gcc/i486-linux-gnu/4.4.3/../../../../i486-linux-gnu/lib/i486-linux-gnu/4.4.3/ /usr/lib/gcc/i486-linux-gnu/4.4.3/../../../../i486-linux-gnu/lib/../lib/ /usr/lib/gcc/i486-linux-gnu/4.4.3/../../../i486-linux-gnu/4.4.3/ /usr/lib/gcc/i486-linux-gnu/4.4.3/../../../../lib/ /lib/i486-linux-gnu/4.4.3/ /lib/../lib/ /usr/lib/i486-linux-gnu/4.4.3/ /usr/lib/../lib/ /usr/lib/i486-linux-gnu/i486-linux-gnu/4.4.3/ /usr/lib/i486-linux-gnu/../lib/ ./ /opt/petsc/lib/ /usr/lib/gcc/i486-linux-gnu/4.4.3/../../../../i486-linux-gnu/lib/ /usr/lib/gcc/i486-linux-gnu/4.4.3/../../../ /lib/ /usr/lib/ /usr/lib/i486-linux-gnu/"
 
 # Run-time system search path for libraries
-sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
+sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/nvidia-current /usr/lib/atlas /opt/cuda/lib /lib/i486-linux-gnu /usr/lib/i486-linux-gnu /opt/kde3/lib/ /usr/lib/alsa-lib /usr/local/lib "
 
 # Fix the shell variable $srcfile for the compiler.
 fix_srcfile_path=""
@@ -7568,10 +7568,10 @@ include_expsyms=""
 
 # ### BEGIN LIBTOOL TAG CONFIG: F77
 
-# Libtool was configured on host deimos104:
+# Libtool was configured on host laptop:
 
 # Shell to use when invoking shell scripts.
-SHELL="/bin/sh"
+SHELL="/bin/bash"
 
 # Whether or not to build shared libraries.
 build_libtool_libs=yes
@@ -7590,12 +7590,12 @@ fast_install=yes
 
 # The host system.
 host_alias=
-host=x86_64-unknown-linux-gnu
+host=i686-pc-linux-gnu
 host_os=linux-gnu
 
 # The build system.
 build_alias=
-build=x86_64-unknown-linux-gnu
+build=i686-pc-linux-gnu
 build_os=linux-gnu
 
 # An echo program that does not interpret backslashes.
@@ -7606,22 +7606,22 @@ AR="ar"
 AR_FLAGS="cru"
 
 # A C compiler.
-LTCC="/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpicc"
+LTCC="gcc"
 
 # LTCC compiler flags.
 LTCFLAGS="-g -O2"
 
 # A language-specific compiler.
-CC="g77"
+CC="f95"
 
 # Is the compiler the GNU C compiler?
-with_gcc=
+with_gcc=yes
 
 # An ERE matcher.
 EGREP="grep -E"
 
 # The linker used to build libraries.
-LD="/usr/x86_64-suse-linux/bin/ld -m elf_x86_64"
+LD="/usr/bin/ld"
 
 # Whether we need hard or soft links.
 LN_S="ln -s"
@@ -7849,10 +7849,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
 link_all_deplibs=unknown
 
 # Compile-time system search path for libraries
-sys_lib_search_path_spec=" /fastfs/wir/local/lib/x86_64-suse-linux/3.3.5/ /fastfs/wir/local/lib/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/ /usr/lib/gcc/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../x86_64-suse-linux/3.3.5/ /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../ /lib/x86_64-suse-linux/3.3.5/ /lib/ /usr/lib/x86_64-suse-linux/3.3.5/ /usr/lib/"
+sys_lib_search_path_spec=" =./i486-linux-gnu/4.4.3/ ./../lib/ /opt/petsc/lib/i486-linux-gnu/4.4.3/ /opt/petsc/lib/../lib/ /usr/lib/gcc/i486-linux-gnu/4.4.3/ /usr/lib/gcc/i486-linux-gnu/4.4.3/ /usr/lib/gcc/i486-linux-gnu/4.4.3/../../../../i486-linux-gnu/lib/i486-linux-gnu/4.4.3/ /usr/lib/gcc/i486-linux-gnu/4.4.3/../../../../i486-linux-gnu/lib/../lib/ /usr/lib/gcc/i486-linux-gnu/4.4.3/../../../i486-linux-gnu/4.4.3/ /usr/lib/gcc/i486-linux-gnu/4.4.3/../../../../lib/ /lib/i486-linux-gnu/4.4.3/ /lib/../lib/ /usr/lib/i486-linux-gnu/4.4.3/ /usr/lib/../lib/ /usr/lib/i486-linux-gnu/i486-linux-gnu/4.4.3/ /usr/lib/i486-linux-gnu/../lib/ ./ /opt/petsc/lib/ /usr/lib/gcc/i486-linux-gnu/4.4.3/../../../../i486-linux-gnu/lib/ /usr/lib/gcc/i486-linux-gnu/4.4.3/../../../ /lib/ /usr/lib/ /usr/lib/i486-linux-gnu/"
 
 # Run-time system search path for libraries
-sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/X11R6/lib64/Xaw3d /usr/X11R6/lib64 /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/pgi/linux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2/libso "
+sys_lib_dlsearch_path_spec="/lib /usr/lib /usr/lib/nvidia-current /usr/lib/atlas /opt/cuda/lib /lib/i486-linux-gnu /usr/lib/i486-linux-gnu /opt/kde3/lib/ /usr/lib/alsa-lib /usr/local/lib "
 
 # Fix the shell variable $srcfile for the compiler.
 fix_srcfile_path=""

AMDiS/src/ProblemVec.cc

@@ -1404,7 +1404,8 @@ namespace AMDiS {
       // == private matrix and vector to the global one.                         ==
 
 #ifdef _OPENMP
-      tmpMatrix->finishInsertion();
+      if (tmpMatrix)
+        tmpMatrix->finishInsertion();
 
       // After mesh traverse, all thread have to added their private matrices and
       // vectors to the global public matrix and public vector. Therefore, this is