Skip to content
Snippets Groups Projects

Compare revisions

Changes are shown as if the source revision was being merged into the target revision. Learn more about comparing revisions.

Source

Select target project
No results found

Target

Select target project
  • iwr/amdis
  • backofen/amdis
  • aland/amdis
3 results
Show changes
Commits on Source (1352)
1,252 additional commits have been omitted to prevent performance issues.
Expand all Hide whitespace changes
Inline Side-by-side
Showing
with 779 additions and 9239 deletions
.gitignore 0 → 100644
View file @ 8272e4a7
# ignore generated .vtu and .pvd files,
*.vtu
*.pvd
*.pvtu
*.vtk
# ignore ARH files
*.arh
*.parh
*.tarh
*.kate-swp
*.tmp
# ignore build directories
build*/
install*/
output*/
# ignore CMake files
CMakeCache.txt
CMakeFiles
CMakeScripts
Testing
Makefile
cmake_install.cmake
install_manifest.txt
compile_commands.json
CTestTestfile.cmake
.gitlab-ci.yml 0 → 100644
View file @ 8272e4a7
---
image: mathiwr/amdis-base:debian9
stages:
- build
- demo
- test
# compile amdis
build:9-debug-gcc:
stage: build
script:
- tools/build_amdis.sh --stage build --config Debug
artifacts:
paths:
- install/
name: "$CI_BUILD_NAME"
expire_in: 6 hrs
build:9-release-gcc:
stage: build
script:
- tools/build_amdis.sh --stage build --config Release
artifacts:
paths:
- install/
name: "$CI_BUILD_NAME"
expire_in: 6 hrs
build:9-parallel-debug-gcc:
stage: build
script:
- tools/build_amdis.sh --stage build --config Debug --parallel
artifacts:
paths:
- install/
name: "$CI_BUILD_NAME"
expire_in: 6 hrs
build:9-parallel-release-gcc:
stage: build
script:
- tools/build_amdis.sh --stage build --config Release --parallel
artifacts:
paths:
- install/
name: "$CI_BUILD_NAME"
expire_in: 6 hrs
# compile the demos
demo:9-debug-gcc:
stage: demo
script:
- tools/build_amdis.sh --stage demo --config Debug
dependencies:
- build:9-debug-gcc
demo:9-release-gcc:
stage: demo
script:
- tools/build_amdis.sh --stage demo --config Release
dependencies:
- build:9-release-gcc
demo:9-parallel-debug-gcc:
stage: demo
script:
- tools/build_amdis.sh --stage demo --config Debug --parallel
dependencies:
- build:9-parallel-debug-gcc
demo:9-parallel-release-gcc:
stage: demo
script:
- tools/build_amdis.sh --stage demo --config Release --parallel
dependencies:
- build:9-parallel-release-gcc
# compiel and run the tests
test:9-debug-gcc:
stage: test
script:
- tools/build_amdis.sh --stage test --config Debug
dependencies:
- build:9-debug-gcc
test:9-release-gcc:
stage: test
script:
- tools/build_amdis.sh --stage test --config Release
dependencies:
- build:9-release-gcc
test:9-parallel-debug-gcc:
stage: test
script:
- tools/build_amdis.sh --stage test --config Debug --parallel
dependencies:
- build:9-parallel-debug-gcc
test:9-parallel-release-gcc:
stage: test
script:
- tools/build_amdis.sh --stage test --config Release --parallel
dependencies:
- build:9-parallel-release-gcc
AMDiS/AMDiSConfig.cmake.in deleted 100644 → 0
View file @ 2ddb447b
#This configuration file is shipped with the great FEM-Toolbox AMDiS.
#It simplifies the configure of different amdis-version and sets some variables.
#We set the following variables:
# AMDIS_INCLUDE_DIR the amdis-directory only
# AMDIS_INCLUDE_DIRS all include directories (mtl, umfpack, parmetis, metis, ...)
# AMDIS_LIBRARIES the needed libraries
# AMDIS_LIBRARY_DIRS the link directories
# AMDiS_COMPILEFLAGS some compile flags for amdis
#
#
# For a fast start, you use this package in the following way
# simply look for it, possibly set the AMDiS directory
# find_package(AMDiS )
# include(${AMDIS_USE_FILE})
# add_executable(yourTarget <yourSources>)
# target_link_libraries(yourTarget ${AMDIS_LIBRARIES})
#
#
#The AMDIS_USE_FILE adds the include and link-directories for amdis to cmake.
#
#If you use the parallel amdis-version, the AMDIS_USE_FILE also trys to detect
#the mpi and petsc configuration. If those versions don't fit your needs,
#you can change the corresponding directories, or simply do this work at your own
#and omit the AMDIS_USE_FILE. Then you also have to set the flags, include
#and library directories.
#try to detect the AMDiS include directory
find_file(_AMDiS_H AMDiS.h PATHS ${AMDIS_INCLUDE_DIR} ${AMDiS_DIR}/../../include/amdis/ /usr/include/amdis/)
if(_AMDiS_H)
get_filename_component(AMDIS_INCLUDE_DIR ${_AMDiS_H} PATH CACHE)
set(AMDIS_INCLUDE_DIRS ${AMDIS_INCLUDE_DIR})
else()
message(ERROR "could not detect the AMDiS include directory. Please set the variable AMDIS_INCLUDE_DIR to the directory containing the AMDiS headers.")
endif()
unset(_AMDiS_H CACHE)
set(MTL_DIR ${AMDIS_INCLUDE_DIR}/mtl4 CACHE PATH "the mtl directory")
list(APPEND AMDIS_INCLUDE_DIRS ${MTL_DIR})
find_library(_AMDiS_LIB amdis PATHS ${AMDIS_LIBRARY_DIR} ${AMDiS_DIR}/../../lib/amdis/ /usr/include/amdis)
if(_AMDiS_LIB)
get_filename_component(AMDIS_LIBRARY_DIR ${_AMDiS_LIB} PATH CACHE)
set(AMDIS_LIBRARY_DIRS ${AMDIS_LIBRARY_DIR})
set(AMDIS_LIBRARIES "${_AMDiS_LIB};${AMDIS_LIBRARY_DIR}/libcompositeFEM.so" CACHE STRING "amdis libraries")
else()
message(ERROR "could not detect the AMDiS library directory. Please set the variable AMDIS_LIBRARY_DIR to the directory containg the AMDiS library")
endif()
unset(_AMDiS_LIB CACHE)
find_package(Boost 1.42 REQUIRED system iostreams)
if(Boost_FOUND)
list(APPEND AMDIS_LIBRARIES ${Boost_LIBRARIES})
list(APPEND AMDIS_LIBRARY_DIRS ${Boost_LIBRARY_DIRS})
list(APPEND AMDIS_INCLUDE_DIRS ${Boost_INCLUDE_DIR})
endif(Boost_FOUND)
set(AMDiS_NEED_PARMETIS @ENABLE_PARMETIS@)
set(AMDiS_NEED_ZOLTAN @ENABLE_ZOLTAN@)
set(AMDiS_HAS_PARALLEL_DOMAIN @ENABLE_PARALLEL_DOMAIN@)
set(AMDiS_NEED_UMFPACK @ENABLE_UMFPACK@)
set(AMDiS_NEED_MKL @ENABLE_MKL@)
set(AMDIS_USE_FILE ${AMDiS_DIR}/AMDiSUse.cmake)
set(AMDiS_COMPILEFLAGS "@COMPILEFLAGS@")
if(AMDiS_NEED_UMFPACK)
find_library(BLAS_LIBRARY NAMES "blas" "goto")
# message("blaslibrary: ${BLAS_LIBRARY}")
if(NOT BLAS_LIBRARY)
message(ERROR " could not find the blas library. please set the variable BLAS_LIBRARY to the blas library with full path")
endif()
list(APPEND AMDIS_LIBRARIES ${AMDIS_LIBRARY_DIR}/umfpack/libumfpack.a ${AMDIS_LIBRARY_DIR}/amd/libamd.a ${BLAS_LIBRARY})
#message("amdis-libs: ${AMDIS_LIBRARIES}")
list(APPEND AMDIS_LIBRARY_DIRS ${AMDIS_LIBRARY_DIR}/umfpack ${AMDIS_LIBRARY_DIR}/amd ${BLAS_LIBRARY_DIR})
list(APPEND AMDIS_INCLUDE_DIRS
${AMDIS_INCLUDE_DIR}/umfpack
${AMDIS_INCLUDE_DIR}/amd
${AMDIS_INCLUDE_DIR}/ufconfig
${AMDIS_INCLUDE_DIR}/ufconfig/xerbla
)
endif(AMDiS_NEED_UMFPACK)
if(${AMDiS_FIND_COMPONENTS} MATCHES umfpack )
if( NOT AMDiS_NEED_UMFPACK )
set( AMDiS_umfpack_FOUND FALSE)
message(SEND_ERROR "the selected amdis was not compiled with umfpack")
endif()
endif()
if( AMDiS_NEED_PARMETIS )
list(APPEND AMDIS_LIBRARY_DIRS ${AMDIS_LIBRARY_DIR}/parmetis)
list(APPEND AMDIS_LIBRARIES ${AMDIS_LIBRARY_DIR}/parmetis/libparmetis.a ${AMDIS_LIBRARY_DIR}/parmetis/libmetis.a)
endif()
if( AMDiS_NEED_ZOLTAN )
find_library(ZOLTAN_LIB zoltan DOC "full path to the zoltan library")
list(APPEND AMDIS_LIBRARIES ${ZOLTAN_LIB})
endif()
if(${AMDiS_FIND_COMPONENTS} MATCHES parmetis AND NOT AMDiS_NEED_PARMETIS)
message(SEND_ERROR "amdis was not compiled with parmetis")
endif()
AMDiS/AMDiSUse.cmake deleted 100644 → 0
View file @ 2ddb447b
#load mpi-compiler for use with parmetis and parallel_domain
if(AMDiS_HAS_PARALLEL_DOMAIN)
if(NOT AMDiS_NEED_PARMETIS)
message(SEND_ERROR "parallel domain needs parmetis, but AMDiS was not compiled with parmetis support. There's something really odd..")
else()
find_package(MPI REQUIRED)
if(MPI_FOUND)
# INCLUDE(CMakeForceCompiler)
# CMAKE_FORCE_CXX_COMPILER(mpicxx "The MPI C++ compiler")
# CMAKE_FORCE_C_COMPILER(mpicc "The MPI C Compiler")
list(APPEND AMDIS_LIBRARIES ${MPI_LIBRARIES})
list(APPEND AMDiS_COMPILEFLAGS ${MPI_COMPILE_FLAGS})
list(APPEND AMDIS_INCLUDE_DIRS ${MPI_INCLUDE_PATH})
endif(MPI_FOUND)
set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} ${AMDiS_DIR})
set(PETSC_EXECUTABLE_RUNS ON)
find_package(PETSc REQUIRED)
if(PETSC_FOUND)
list(APPEND AMDIS_LIBRARIES ${PETSC_LIBRARY_SYS} ${PETSC_LIBRARIES})
list(APPEND AMDIS_INCLUDE_DIRS ${PETSC_INCLUDES})
endif(PETSC_FOUND)
endif(NOT AMDiS_NEED_PARMETIS)
endif(AMDiS_HAS_PARALLEL_DOMAIN)
#thats bad because it affects each target
add_definitions(${AMDiS_COMPILEFLAGS})
include_directories(${AMDIS_INCLUDE_DIRS})
AMDiS/AUTHORS deleted 100644 → 0
View file @ 2ddb447b
AMDiS/CMakeLists.txt
View file @ 8272e4a7
set(CMAKE_LEGACY_CYGWIN_WIN32 0)
cmake_minimum_required(VERSION 2.8.12 FATAL_ERROR)
project(AMDiS)
cmake_minimum_required(VERSION 2.6)
#needs: --enable-debug, enable-intel --enable-openmp --enable-parmetis --enable-parallel-domain --enable-umfpack --enable-mkl --enable-boost --enable-marmot
SET(LIB_DIR ${AMDiS_SOURCE_DIR}/lib)
SET(SOURCE_DIR ${AMDiS_SOURCE_DIR}/src)
#TODO: use the cmake build type
SET(MTL_DIR ${LIB_DIR}/mtl4/ CACHE PATH "mtl4 directory")
set(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} -g -Wall -DDEBUG=0")
set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -Wall -DDEBUG=1 -O0")
#define the build type, empty can be everything and nothing
if(CMAKE_BUILD_TYPE STREQUAL "")
set(CMAKE_BUILD_TYPE "Release")
endif()
#option(ENABLE_INTEL "use intel compiler" false)
option(ENABLE_OPENMP "use openmp" false)
option(ENABLE_PARALLEL_DOMAIN "use parallel domain decomposition" false)
option(USE_PETSC_DEV false)
#parmetis is not optional
set(ENABLE_PARMETIS false)
option(ENABLE_ZOLTAN false)
option(ENABLE_UMFPACK "use umfpack solver" false)
option(ENABLE_MKL "use the mkl" false)
SET(MKL_DIR "" CACHE PATH "MKL directory")
option(ENABLE_TESTS "compile the tests" false)
if(ENABLE_INTEL)
Message("please set the icc manually")
INCLUDE (CMakeForceCompiler)
CMAKE_FORCE_C_COMPILER(icc "intel C compiler")
CMAKE_FORCE_CXX_COMPILER(icpc "intel C++ compiler")
#SET(CMAKE_C_COMPILER "icc")
endif(ENABLE_INTEL)
find_package(Boost 1.42 REQUIRED)
if(Boost_FOUND)
include_directories(${Boost_INCLUDE_DIR})
message("boost lib-dirs: ${Boost_LIBRARY_DIRS}")
message("use the boost dir: ${Boost_INCLUDE_DIR}")
if(WIN32)
message("the windows find_boost does not set the boost library paths, please set it")
SET(Boost_LIBRARY_DIRS CACHE PATH "The directory containing the boost libraries")
endif(WIN32)
link_directories(${Boost_LIBRARY_DIRS})
endif(Boost_FOUND)
SET(AMDIS_SRC ${SOURCE_DIR}/AdaptBase.cc
${SOURCE_DIR}/AdaptInfo.cc
${SOURCE_DIR}/AdaptInstationary.cc
${SOURCE_DIR}/AdaptStationary.cc
${SOURCE_DIR}/Assembler.cc
${SOURCE_DIR}/BasisFunction.cc
${SOURCE_DIR}/Boundary.cc
${SOURCE_DIR}/BoundaryManager.cc
${SOURCE_DIR}/Cholesky.cc
${SOURCE_DIR}/CoarseningManager.cc
${SOURCE_DIR}/CoarseningManager1d.cc
${SOURCE_DIR}/CoarseningManager2d.cc
${SOURCE_DIR}/CoarseningManager3d.cc
${SOURCE_DIR}/ComponentTraverseInfo.cc
${SOURCE_DIR}/CreatorMap.cc
${SOURCE_DIR}/DOFAdmin.cc
${SOURCE_DIR}/DOFIndexed.cc
${SOURCE_DIR}/DOFMatrix.cc
${SOURCE_DIR}/DOFVector.cc
${SOURCE_DIR}/Debug.cc
${SOURCE_DIR}/DirichletBC.cc
${SOURCE_DIR}/DualTraverse.cc
${SOURCE_DIR}/ElInfo.cc
${SOURCE_DIR}/ElInfo1d.cc
${SOURCE_DIR}/ElInfo2d.cc
${SOURCE_DIR}/ElInfo3d.cc
${SOURCE_DIR}/ElInfoStack.cc
${SOURCE_DIR}/Element.cc
${SOURCE_DIR}/ElementData.cc
${SOURCE_DIR}/ElementDofIterator.cc
${SOURCE_DIR}/Estimator.cc
${SOURCE_DIR}/FiniteElemSpace.cc
${SOURCE_DIR}/FirstOrderAssembler.cc
${SOURCE_DIR}/FirstOrderTerm.cc
${SOURCE_DIR}/FixVec.cc
${SOURCE_DIR}/Global.cc
${SOURCE_DIR}/GlobalDOFNumbering.cc
${SOURCE_DIR}/GlobalElementNumbering.cc
${SOURCE_DIR}/Lagrange.cc
${SOURCE_DIR}/LeafData.cc
${SOURCE_DIR}/Line.cc
${SOURCE_DIR}/MacroElement.cc
${SOURCE_DIR}/Marker.cc
${SOURCE_DIR}/Mesh.cc
${SOURCE_DIR}/MeshStructure.cc
${SOURCE_DIR}/NonLinUpdater.cc
${SOURCE_DIR}/Operator.cc
${SOURCE_DIR}/OperatorTerm.cc
${SOURCE_DIR}/Parameters.cc
${SOURCE_DIR}/Parametric.cc
${SOURCE_DIR}/PeriodicBC.cc
${SOURCE_DIR}/ProblemImplicit.cc
${SOURCE_DIR}/ProblemInstat.cc
${SOURCE_DIR}/ProblemInterpolScal.cc
${SOURCE_DIR}/ProblemInterpolVec.cc
${SOURCE_DIR}/ProblemNonLin.cc
${SOURCE_DIR}/ProblemScal.cc
${SOURCE_DIR}/ProblemVec.cc
${SOURCE_DIR}/ProblemVecDbg.cc
${SOURCE_DIR}/Projection.cc
${SOURCE_DIR}/QPInfo.cc
${SOURCE_DIR}/QPsiPhi.cc
${SOURCE_DIR}/Quadrature.cc
${SOURCE_DIR}/RCNeighbourList.cc
${SOURCE_DIR}/Recovery.cc
${SOURCE_DIR}/RecoveryEstimator.cc
${SOURCE_DIR}/RefinementManager.cc
${SOURCE_DIR}/RefinementManager1d.cc
${SOURCE_DIR}/RefinementManager2d.cc
${SOURCE_DIR}/RefinementManager3d.cc
${SOURCE_DIR}/ResidualEstimator.cc
${SOURCE_DIR}/ResidualParallelEstimator.cc
${SOURCE_DIR}/RobinBC.cc
${SOURCE_DIR}/ScalableQuadrature.cc
${SOURCE_DIR}/SecondOrderAssembler.cc
${SOURCE_DIR}/SecondOrderTerm.cc
${SOURCE_DIR}/Serializer.cc
${SOURCE_DIR}/StandardProblemIteration.cc
${SOURCE_DIR}/SubAssembler.cc
${SOURCE_DIR}/SubElInfo.cc
${SOURCE_DIR}/SubQuadrature.cc
${SOURCE_DIR}/SurfaceQuadrature.cc
${SOURCE_DIR}/Tetrahedron.cc
${SOURCE_DIR}/Traverse.cc
${SOURCE_DIR}/TraverseParallel.cc
${SOURCE_DIR}/Triangle.cc
${SOURCE_DIR}/VertexVector.cc
${SOURCE_DIR}/ZeroOrderAssembler.cc
${SOURCE_DIR}/ZeroOrderTerm.cc
${SOURCE_DIR}/io/ArhReader.cc
${SOURCE_DIR}/io/ArhWriter.cc
${SOURCE_DIR}/io/DataCollector.cc
${SOURCE_DIR}/io/DofWriter.cc
${SOURCE_DIR}/io/ElementFileWriter.cc
${SOURCE_DIR}/io/FileWriter.cc
${SOURCE_DIR}/io/GNUPlotWriter.cc
${SOURCE_DIR}/io/MacroInfo.cc
${SOURCE_DIR}/io/MacroReader.cc
${SOURCE_DIR}/io/MacroWriter.cc
${SOURCE_DIR}/io/PngWriter.cc
${SOURCE_DIR}/io/PovrayWriter.cc
${SOURCE_DIR}/io/ValueReader.cc
${SOURCE_DIR}/io/ValueWriter.cc
${SOURCE_DIR}/io/VtkWriter.cc
${SOURCE_DIR}/parallel/InteriorBoundary.cc
${SOURCE_DIR}/time/RosenbrockAdaptInstationary.cc
${SOURCE_DIR}/time/RosenbrockMethod.cc
${SOURCE_DIR}/time/RosenbrockStationary.cc
)
if(ENABLE_PARALLEL_DOMAIN)
find_package(MPI REQUIRED)
if(MPI_FOUND)
#INCLUDE (CMakeForceCompiler)
#CMAKE_FORCE_C_COMPILER(mpicc "MPI C compiler")
#CMAKE_FORCE_CXX_COMPILER(mpiCC "MPI C++ compiler")
list(APPEND AMDiS_COMPILEFLAGS ${MPI_COMPILE_FLAGS})
include_directories(${MPI_INCLUDE_PATH})
endif(MPI_FOUND)
add_custom_target(parmetis-lib ALL
make
WORKING_DIRECTORY ${LIB_DIR}/ParMetis-3.1
)
include_directories( ${LIB_DIR}/ParMetis-3.1)
INSTALL(FILES ${LIB_DIR}/ParMetis-3.1/parmetis.h
${LIB_DIR}/ParMetis-3.1/libparmetis.a
${LIB_DIR}/ParMetis-3.1/libmetis.a
DESTINATION lib/amdis/parmetis
)
set(ENABLE_PARMETIS ON)
if(ENABLE_ZOLTAN)
find_file(ZOLTAN_HEADER_FILE "zoltan_cpp.h")
if( ZOLTAN_HEADER_FILE )
get_filename_component(ZOLTAN_HEADER_DIR "${ZOLTAN_HEADER_FILE}" PATH CACHE)
include_directories(${ZOLTAN_HEADER_DIR})
else()
message( FATAL_ERROR "could not find zoltan.")
endif( ZOLTAN_HEADER_FILE )
set(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_ZOLTAN")
endif(ENABLE_ZOLTAN)
set(CMAKE_MODULE_PATH "${CMAKE_MODULE_PATH};/usr/share/cmake-2.8/Modules/;${CMAKE_SOURCE_DIR}/")
set(PETSC_EXECUTABLE_RUNS ON)
find_package(PETSc REQUIRED)
include_directories(${PETSC_DIR}/include ${PETSC_DIR}/${PETSC_ARCH}/include)
SET(PARALLEL_DOMAIN_AMDIS_SRC
${SOURCE_DIR}/parallel/CheckerPartitioner.cc
${SOURCE_DIR}/parallel/ElementObjectData.cc
${SOURCE_DIR}/parallel/MeshDistributor.cc
${SOURCE_DIR}/parallel/MeshManipulation.cc
${SOURCE_DIR}/parallel/MeshPartitioner.cc
${SOURCE_DIR}/parallel/MpiHelper.cc
${SOURCE_DIR}/parallel/ParallelDebug.cc
${SOURCE_DIR}/parallel/ParallelProblemStatBase.cc
${SOURCE_DIR}/parallel/ParMetisPartitioner.cc
${SOURCE_DIR}/parallel/PetscProblemStat.cc
${SOURCE_DIR}/parallel/PetscSolver.cc
${SOURCE_DIR}/parallel/StdMpi.cc
${SOURCE_DIR}/parallel/ZoltanPartitioner.cc)
SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_PARALLEL_DOMAIN_AMDIS=1")
INSTALL(FILES ResolveCompilerPaths.cmake FindPackageMultipass.cmake FindPETSc.cmake
DESTINATION share/amdis/)
if( USE_PETSC_DEV )
SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_PETSC_DEV")
endif( USE_PETSC_DEV)
endif(ENABLE_PARALLEL_DOMAIN)
if(ENABLE_OPENMP)
find_package(OpenMP)
if(OPENMP_FOUND)
SET(COMPILEFLAGS "${COMPILEFLAGS} ${OpenMP_CXX_FLAGS}")
else()
message(WARNING "your compiler seems not supporting openmp")
endif()
endif(ENABLE_OPENMP)
if(ENABLE_UMFPACK)
include_directories(${LIB_DIR}/UFconfig ${LIB_DIR}/AMD/Include ${LIB_DIR}/UMFPACK/Include)
SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_UMFPACK=1 -DMTL_HAS_UMFPACK")
FILE(GLOB UMFPACK_HEADERS "${LIB_DIR}/UMFPACK/Include/*.h")
INSTALL(FILES ${UMFPACK_HEADERS}
DESTINATION include/amdis/umfpack/)
list(APPEND deb_add_dirs "include/amdis/umfpack")
FILE(GLOB UMFPACK_HEADERS "${LIB_DIR}/AMD/Include/*.h")
INSTALL(FILES ${UMFPACK_HEADERS}
DESTINATION include/amdis/amd/)
list(APPEND deb_add_dirs "include/amdis/amd")
FILE(GLOB HEADERS "${LIB_DIR}/UFconfig/*.h")
INSTALL(FILES ${HEADERS}
DESTINATION include/amdis/ufconfig/)
list(APPEND deb_add_dirs "include/amdis/ufconfig")
FILE(GLOB HEADERS "${LIB_DIR}/UFconfig/xerbla/*.h")
INSTALL(FILES ${HEADERS}
DESTINATION include/amdis/ufconfig/xerbla)
list(APPEND deb_add_dirs "include/amdis/ufconfig/xerbla")
#add some rules to build the umfpack and amd libs
# message("adding command for libumfpack:${CMAKE_CURRENT_SOURCE_DIR}/${LIB_DIR}/UMFPACK/Lib/libumfpack.a ")
add_custom_target(umfpack-lib ALL
make
WORKING_DIRECTORY ${LIB_DIR}/UMFPACK
)
add_custom_target(amd-lib ALL
make
WORKING_DIRECTORY ${LIB_DIR}/AMD
)
INSTALL(FILES ${LIB_DIR}/UMFPACK/Lib/libumfpack.a
DESTINATION lib/amdis/umfpack/)
list(APPEND deb_add_dirs "lib/amdis/umfpack")
INSTALL(FILES ${LIB_DIR}/AMD/Lib/libamd.a
DESTINATION lib/amdis/amd/)
list(APPEND deb_add_dirs "lib/amdis/amd")
SET(RPM_DEPEND_STR "blas")
LIST(APPEND AMDiS_LIBS amdis blas amd umfpack)
endif(ENABLE_UMFPACK)
if(ENABLE_MKL)
include_directories(${MKL_DIR})
SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_MKL=1")
endif(ENABLE_MKL)
SET(COMPOSITE_SOURCE_DIR ${SOURCE_DIR}/compositeFEM)
SET(COMPOSITE_FEM_SRC ${COMPOSITE_SOURCE_DIR}/CFE_Integration.cc
${COMPOSITE_SOURCE_DIR}/CFE_NormAndErrorFcts.cc
${COMPOSITE_SOURCE_DIR}/CompositeFEMMethods.cc
${COMPOSITE_SOURCE_DIR}/CompositeFEMOperator.cc
${COMPOSITE_SOURCE_DIR}/LevelSetAdaptMesh.cc
${COMPOSITE_SOURCE_DIR}/PenaltyOperator.cc
${COMPOSITE_SOURCE_DIR}/ElementLevelSet.cc
${COMPOSITE_SOURCE_DIR}/SubPolytope.cc
${COMPOSITE_SOURCE_DIR}/SubElementAssembler.cc )
set(REINIT_SOURCE_DIR ${SOURCE_DIR}/reinit)
file(GLOB REINIT_SRC ${REINIT_SOURCE_DIR}/*.cc)
include_directories(${REINIT_SOURCE_DIR})
#mtl4 includes
include_directories(${MTL_DIR})
include_directories(${SOURCE_DIR})
add_library(amdis SHARED ${AMDIS_SRC} ${PARALLEL_DOMAIN_AMDIS_SRC})
add_library(compositeFEM SHARED ${COMPOSITE_FEM_SRC})
add_library(reinit STATIC ${REINIT_SRC})
target_link_libraries(compositeFEM amdis)
LIST(APPEND AMDiS_LIBS amdis boost_system boost_iostreams)
if(WIN32)
SET(COMPILEFLAGS "${COMPILEFLAGS} -D_SCL_SECURE_NO_WARNINGS -D_CRT_SECURE_NO_WARNINGS")
endif(WIN32)
message("compileflags: ${COMPILEFLAGS}")
#SET_TARGET_PROPERTIES(amdis PROPERTIES COMPILE_FLAGS "${COMPILEFLAGS}")
add_definitions(${COMPILEFLAGS})
if(ENABLE_MARMOT)
Message("please set marmotcc manually")
endif(ENABLE_MARMOT)
#dont change this destination. the GUI depends on it to guess the buildsystem
list(APPEND deb_add_dirs "lib/amdis")
install(TARGETS amdis compositeFEM
LIBRARY DESTINATION lib/amdis/ )
FILE(GLOB HEADERS "${SOURCE_DIR}/*.h")
INSTALL(FILES ${HEADERS}
DESTINATION include/amdis/)
list(APPEND deb_add_dirs "include/amdis")
FILE(GLOB HEADERS "${SOURCE_DIR}/*.hh")
INSTALL(FILES ${HEADERS}
DESTINATION include/amdis/)
FILE(GLOB HEADERS "${SOURCE_DIR}/parallel/*.h")
INSTALL(FILES ${HEADERS}
DESTINATION include/amdis/parallel/)
list(APPEND deb_add_dirs "include/amdis/parallel")
FILE(GLOB HEADERS "${SOURCE_DIR}/time/*.h")
INSTALL(FILES ${HEADERS}
DESTINATION include/amdis/time/)
list(APPEND deb_add_dirs "include/amdis/time")
FILE(GLOB HEADERS "${SOURCE_DIR}/itl/*.hpp")
INSTALL(FILES ${HEADERS}
DESTINATION include/amdis/itl)
list(APPEND deb_add_dirs "include/amdis/itl")
FILE(GLOB HEADERS "${SOURCE_DIR}/io/*.h")
INSTALL(FILES ${HEADERS}
DESTINATION include/amdis/io)
list(APPEND deb_add_dirs "include/amdis/io")
FILE(GLOB HEADERS "${SOURCE_DIR}/io/*.hh")
INSTALL(FILES ${HEADERS}
DESTINATION include/amdis/io)
configure_file(${AMDiS_SOURCE_DIR}/AMDiSConfig.cmake.in
${AMDiS_BINARY_DIR}/AMDISConfig.cmake
@ONLY
)
INSTALL(FILES ${AMDiS_BINARY_DIR}/AMDISConfig.cmake
DESTINATION share/amdis/)
list(APPEND deb_add_dirs "share/amdis/")
INSTALL(FILES ${AMDiS_SOURCE_DIR}/AMDiSUse.cmake
DESTINATION share/amdis/)
#install mtl
INSTALL(DIRECTORY ${AMDiS_SOURCE_DIR}/lib/mtl4/
DESTINATION include/amdis/mtl4/
FILES_MATCHING PATTERN "*.hpp"
PATTERN ".svn" EXCLUDE
PATTERN ".svn/*" EXCLUDE
PATTERN "mtl4/libs" EXCLUDE
PATTERN "mtl4/extern" EXCLUDE
)
FILE(GLOB_RECURSE mtl4_files
RELATIVE ${AMDiS_SOURCE_DIR}/lib/mtl4/boost/
${AMDiS_SOURCE_DIR}/lib/mtl4/boost/*.hpp)
foreach(mtl4_file in ${mtl4_files})
get_filename_component(mtl4File_path ${mtl4_file} PATH)
list(APPEND deb_add_dirs "include/amdis/mtl4/boost/${mtl4File_path}")
endforeach(mtl4_file)
list(REMOVE_DUPLICATES deb_add_dirs)
#PACKAGES
#let cmake look for the svn-version
find_package(Subversion)
if(Subversion_FOUND)
Subversion_WC_INFO(${AMDiS_SOURCE_DIR} mtlSubinfo)
set(CurrentRevision ${mtlSubinfo_WC_REVISION})
# message("current revision: ${mtlSubinfo_WC_REVISION}")
else(Subversion_FOUND)
set(CurrentRevision "0")
endif(Subversion_FOUND)
set(CPACK_PACKAGE_NAME "AMDiS")
set(CPACK_PACKAGE_CONTACT "Andreas.Naumann@tu-dresden.de")
set(CPACK_PACKAGE_VERSION "0.9.${CurrentRevision}")
set(CPACK_GENERATOR "RPM" "DEB" "TGZ")
set(CPACK_INSTALL_PREFIX "/usr/")
configure_file(${AMDiS_SOURCE_DIR}/preinst.in
${AMDiS_BINARY_DIR}/preinst
@ONLY)
configure_file(${AMDiS_SOURCE_DIR}/postrm.in
${AMDiS_BINARY_DIR}/postrm
@ONLY)
set(CPACK_RPM_PACKAGE_REQUIRES "boost-devel >= 1.42, ${RPM_DEPEND_STR}")
set(CPACK_DEBIAN_PACKAGE_DEPENDS "libboost-dev (>= 1.42), libboost-iostreams-dev (>= 1.42), libboost-system-dev (>= 1.42)")
set(CPACK_DEBIAN_PACKAGE_CONTROL_EXTRA "${AMDiS_BINARY_DIR}/preinst" "${AMDiS_BINARY_DIR}/postrm")
include(CPack)
if(ENABLE_TESTS)
ENABLE_TESTING()
add_subdirectory(test)
endif(ENABLE_TESTS)
set(AMDiS_VERSION "1.2.0")
set(BASE_DIR ${AMDiS_SOURCE_DIR})
set(SOURCE_DIR ${BASE_DIR}/src)
if (NOT CMAKE_BUILD_TYPE)
set(CMAKE_BUILD_TYPE RelWithDebInfo CACHE STRING
"Choose the type of build, options are: None Debug Release [RelWithDebInfo] MinSizeRel."
FORCE)
endif ()
# ------------------------------------------------------------------------------
# some options to control the build process
option(ENABLE_PARALLEL_DOMAIN "Use parallel domain decomposition" false)
option(ENABLE_MPI "Compile with MPI compiler and library" false)
option(ENABLE_UMFPACK "Enable support for the UMFPACK solver" true)
option(ENABLE_EXTENSIONS "Use extensions for AMDiS" false)
option(ENABLE_HYPRE "Use HYPRE AMG solver" false)
option(ENABLE_PNG "Use png reader/writer" false)
include(CMakeDependentOption)
# additional options for parallel_domain
# {
cmake_dependent_option(ENABLE_ZOLTAN
"Add support for the Parallel Partitioning suite Zoltan" false
"ENABLE_PARALLEL_DOMAIN" false)
cmake_dependent_option(ENABLE_PARALLEL_SOLVERS
"Add some problem dependent solver, e.g. Feti, Navier-Stokes and Cahn-Hilliard" true
"ENABLE_PARALLEL_DOMAIN" false)
cmake_dependent_option(ENABLE_BDDCML
"Add support for the BDDCML library" false
"ENABLE_PARALLEL_DOMAIN" false)
# }
# enable/disable some more features
option(ENABLE_COMPRESSION "Use output compression for vtu and arh files" true)
mark_as_advanced(ENABLE_COMPRESSION)
option(ENABLE_REINIT "Compile reinit library" true)
mark_as_advanced(ENABLE_REINIT)
option(ENABLE_COMPOSITE_FEM "Compile compositeFEM library" true)
mark_as_advanced(ENABLE_COMPOSITE_FEM)
option(ENABLE_OPENMP "Compile with OpenMP flags. (Experimental)" false)
mark_as_advanced(ENABLE_OPENMP)
option(ENABLE_SEQ_PETSC "Use sequential PETSc solvers" false)
mark_as_advanced(ENABLE_SEQ_PETSC)
option(BUILD_SHARED_LIBS "Build all libraries as shared or static, default: shared" true)
mark_as_advanced(BUILD_SHARED_LIBS)
if (MSVC)
set(BUILD_SHARED_LIBS false)
mark_as_advanced(BUILD_SHARED_LIBS)
message(WARNING "Currently we can only build static libraries with Visual Studio")
add_definitions(-DNOMINMAX -D_CONSOLE -DSTRICT -D_SCL_SECURE_NO_WARNINGS -D_CRT_SECURE_NO_WARNINGS)
endif (MSVC)
# parallel of sequential version
if (ENABLE_PARALLEL_DOMAIN)
set(ENABLE_MPI 1 CACHE BOOL "Compile with MPI compiler and library" FORCE)
set(POSTFIX "-p")
else ()
set(POSTFIX "-s")
endif ()
# ------------------------------------------------------------------------------
if (${CMAKE_VERSION} VERSION_LESS "3.2")
# Fallback to classical CMakeLists file
include(${AMDiS_SOURCE_DIR}/cmake/CMakeLists.txt)
else ()
include(${AMDiS_SOURCE_DIR}/cmake3/CMakeLists.txt)
endif ()
# ------------------------------------------------------------------------------
include(CMakePackageConfigHelpers)
write_basic_package_version_file(
${AMDiS_BINARY_DIR}/AMDISConfigVersion.cmake
VERSION ${AMDiS_VERSION}
COMPATIBILITY SameMajorVersion
)
install(FILES ${AMDiS_BINARY_DIR}/AMDISConfigVersion.cmake DESTINATION share/amdis/)
AMDiS/COPYING deleted 100644 → 0
View file @ 2ddb447b
GNU GENERAL PUBLIC LICENSE
Version 2, June 1991
Copyright (C) 1989, 1991 Free Software Foundation, Inc.
59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Everyone is permitted to copy and distribute verbatim copies
of this license document, but changing it is not allowed.
Preamble
The licenses for most software are designed to take away your
freedom to share and change it. By contrast, the GNU General Public
License is intended to guarantee your freedom to share and change free
software--to make sure the software is free for all its users. This
General Public License applies to most of the Free Software
Foundation's software and to any other program whose authors commit to
using it. (Some other Free Software Foundation software is covered by
the GNU Library General Public License instead.) You can apply it to
your programs, too.
When we speak of free software, we are referring to freedom, not
price. Our General Public Licenses are designed to make sure that you
have the freedom to distribute copies of free software (and charge for
this service if you wish), that you receive source code or can get it
if you want it, that you can change the software or use pieces of it
in new free programs; and that you know you can do these things.
To protect your rights, we need to make restrictions that forbid
anyone to deny you these rights or to ask you to surrender the rights.
These restrictions translate to certain responsibilities for you if you
distribute copies of the software, or if you modify it.
For example, if you distribute copies of such a program, whether
gratis or for a fee, you must give the recipients all the rights that
you have. You must make sure that they, too, receive or can get the
source code. And you must show them these terms so they know their
rights.
We protect your rights with two steps: (1) copyright the software, and
(2) offer you this license which gives you legal permission to copy,
distribute and/or modify the software.
Also, for each author's protection and ours, we want to make certain
that everyone understands that there is no warranty for this free
software. If the software is modified by someone else and passed on, we
want its recipients to know that what they have is not the original, so
that any problems introduced by others will not reflect on the original
authors' reputations.
Finally, any free program is threatened constantly by software
patents. We wish to avoid the danger that redistributors of a free
program will individually obtain patent licenses, in effect making the
program proprietary. To prevent this, we have made it clear that any
patent must be licensed for everyone's free use or not licensed at all.
The precise terms and conditions for copying, distribution and
modification follow.
GNU GENERAL PUBLIC LICENSE
TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
0. This License applies to any program or other work which contains
a notice placed by the copyright holder saying it may be distributed
under the terms of this General Public License. The "Program", below,
refers to any such program or work, and a "work based on the Program"
means either the Program or any derivative work under copyright law:
that is to say, a work containing the Program or a portion of it,
either verbatim or with modifications and/or translated into another
language. (Hereinafter, translation is included without limitation in
the term "modification".) Each licensee is addressed as "you".
Activities other than copying, distribution and modification are not
covered by this License; they are outside its scope. The act of
running the Program is not restricted, and the output from the Program
is covered only if its contents constitute a work based on the
Program (independent of having been made by running the Program).
Whether that is true depends on what the Program does.
1. You may copy and distribute verbatim copies of the Program's
source code as you receive it, in any medium, provided that you
conspicuously and appropriately publish on each copy an appropriate
copyright notice and disclaimer of warranty; keep intact all the
notices that refer to this License and to the absence of any warranty;
and give any other recipients of the Program a copy of this License
along with the Program.
You may charge a fee for the physical act of transferring a copy, and
you may at your option offer warranty protection in exchange for a fee.
2. You may modify your copy or copies of the Program or any portion
of it, thus forming a work based on the Program, and copy and
distribute such modifications or work under the terms of Section 1
above, provided that you also meet all of these conditions:
a) You must cause the modified files to carry prominent notices
stating that you changed the files and the date of any change.
b) You must cause any work that you distribute or publish, that in
whole or in part contains or is derived from the Program or any
part thereof, to be licensed as a whole at no charge to all third
parties under the terms of this License.
c) If the modified program normally reads commands interactively
when run, you must cause it, when started running for such
interactive use in the most ordinary way, to print or display an
announcement including an appropriate copyright notice and a
notice that there is no warranty (or else, saying that you provide
a warranty) and that users may redistribute the program under
these conditions, and telling the user how to view a copy of this
License. (Exception: if the Program itself is interactive but
does not normally print such an announcement, your work based on
the Program is not required to print an announcement.)
These requirements apply to the modified work as a whole. If
identifiable sections of that work are not derived from the Program,
and can be reasonably considered independent and separate works in
themselves, then this License, and its terms, do not apply to those
sections when you distribute them as separate works. But when you
distribute the same sections as part of a whole which is a work based
on the Program, the distribution of the whole must be on the terms of
this License, whose permissions for other licensees extend to the
entire whole, and thus to each and every part regardless of who wrote it.
Thus, it is not the intent of this section to claim rights or contest
your rights to work written entirely by you; rather, the intent is to
exercise the right to control the distribution of derivative or
collective works based on the Program.
In addition, mere aggregation of another work not based on the Program
with the Program (or with a work based on the Program) on a volume of
a storage or distribution medium does not bring the other work under
the scope of this License.
3. You may copy and distribute the Program (or a work based on it,
under Section 2) in object code or executable form under the terms of
Sections 1 and 2 above provided that you also do one of the following:
a) Accompany it with the complete corresponding machine-readable
source code, which must be distributed under the terms of Sections
1 and 2 above on a medium customarily used for software interchange; or,
b) Accompany it with a written offer, valid for at least three
years, to give any third party, for a charge no more than your
cost of physically performing source distribution, a complete
machine-readable copy of the corresponding source code, to be
distributed under the terms of Sections 1 and 2 above on a medium
customarily used for software interchange; or,
c) Accompany it with the information you received as to the offer
to distribute corresponding source code. (This alternative is
allowed only for noncommercial distribution and only if you
received the program in object code or executable form with such
an offer, in accord with Subsection b above.)
The source code for a work means the preferred form of the work for
making modifications to it. For an executable work, complete source
code means all the source code for all modules it contains, plus any
associated interface definition files, plus the scripts used to
control compilation and installation of the executable. However, as a
special exception, the source code distributed need not include
anything that is normally distributed (in either source or binary
form) with the major components (compiler, kernel, and so on) of the
operating system on which the executable runs, unless that component
itself accompanies the executable.
If distribution of executable or object code is made by offering
access to copy from a designated place, then offering equivalent
access to copy the source code from the same place counts as
distribution of the source code, even though third parties are not
compelled to copy the source along with the object code.
4. You may not copy, modify, sublicense, or distribute the Program
except as expressly provided under this License. Any attempt
otherwise to copy, modify, sublicense or distribute the Program is
void, and will automatically terminate your rights under this License.
However, parties who have received copies, or rights, from you under
this License will not have their licenses terminated so long as such
parties remain in full compliance.
5. You are not required to accept this License, since you have not
signed it. However, nothing else grants you permission to modify or
distribute the Program or its derivative works. These actions are
prohibited by law if you do not accept this License. Therefore, by
modifying or distributing the Program (or any work based on the
Program), you indicate your acceptance of this License to do so, and
all its terms and conditions for copying, distributing or modifying
the Program or works based on it.
6. Each time you redistribute the Program (or any work based on the
Program), the recipient automatically receives a license from the
original licensor to copy, distribute or modify the Program subject to
these terms and conditions. You may not impose any further
restrictions on the recipients' exercise of the rights granted herein.
You are not responsible for enforcing compliance by third parties to
this License.
7. If, as a consequence of a court judgment or allegation of patent
infringement or for any other reason (not limited to patent issues),
conditions are imposed on you (whether by court order, agreement or
otherwise) that contradict the conditions of this License, they do not
excuse you from the conditions of this License. If you cannot
distribute so as to satisfy simultaneously your obligations under this
License and any other pertinent obligations, then as a consequence you
may not distribute the Program at all. For example, if a patent
license would not permit royalty-free redistribution of the Program by
all those who receive copies directly or indirectly through you, then
the only way you could satisfy both it and this License would be to
refrain entirely from distribution of the Program.
If any portion of this section is held invalid or unenforceable under
any particular circumstance, the balance of the section is intended to
apply and the section as a whole is intended to apply in other
circumstances.
It is not the purpose of this section to induce you to infringe any
patents or other property right claims or to contest validity of any
such claims; this section has the sole purpose of protecting the
integrity of the free software distribution system, which is
implemented by public license practices. Many people have made
generous contributions to the wide range of software distributed
through that system in reliance on consistent application of that
system; it is up to the author/donor to decide if he or she is willing
to distribute software through any other system and a licensee cannot
impose that choice.
This section is intended to make thoroughly clear what is believed to
be a consequence of the rest of this License.
8. If the distribution and/or use of the Program is restricted in
certain countries either by patents or by copyrighted interfaces, the
original copyright holder who places the Program under this License
may add an explicit geographical distribution limitation excluding
those countries, so that distribution is permitted only in or among
countries not thus excluded. In such case, this License incorporates
the limitation as if written in the body of this License.
9. The Free Software Foundation may publish revised and/or new versions
of the General Public License from time to time. Such new versions will
be similar in spirit to the present version, but may differ in detail to
address new problems or concerns.
Each version is given a distinguishing version number. If the Program
specifies a version number of this License which applies to it and "any
later version", you have the option of following the terms and conditions
either of that version or of any later version published by the Free
Software Foundation. If the Program does not specify a version number of
this License, you may choose any version ever published by the Free Software
Foundation.
10. If you wish to incorporate parts of the Program into other free
programs whose distribution conditions are different, write to the author
to ask for permission. For software which is copyrighted by the Free
Software Foundation, write to the Free Software Foundation; we sometimes
make exceptions for this. Our decision will be guided by the two goals
of preserving the free status of all derivatives of our free software and
of promoting the sharing and reuse of software generally.
NO WARRANTY
11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY
FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN
OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES
PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED
OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS
TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE
PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING,
REPAIR OR CORRECTION.
12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR
REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,
INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING
OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED
TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY
YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER
PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
POSSIBILITY OF SUCH DAMAGES.
END OF TERMS AND CONDITIONS
How to Apply These Terms to Your New Programs
If you develop a new program, and you want it to be of the greatest
possible use to the public, the best way to achieve this is to make it
free software which everyone can redistribute and change under these terms.
To do so, attach the following notices to the program. It is safest
to attach them to the start of each source file to most effectively
convey the exclusion of warranty; and each file should have at least
the "copyright" line and a pointer to where the full notice is found.
<one line to give the program's name and a brief idea of what it does.>
Copyright (C) 19yy <name of author>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Also add information on how to contact you by electronic and paper mail.
If the program is interactive, make it output a short notice like this
when it starts in an interactive mode:
Gnomovision version 69, Copyright (C) 19yy name of author
Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
This is free software, and you are welcome to redistribute it
under certain conditions; type `show c' for details.
The hypothetical commands `show w' and `show c' should show the appropriate
parts of the General Public License. Of course, the commands you use may
be called something other than `show w' and `show c'; they could even be
mouse-clicks or menu items--whatever suits your program.
You should also get your employer (if you work as a programmer) or your
school, if any, to sign a "copyright disclaimer" for the program, if
necessary. Here is a sample; alter the names:
Yoyodyne, Inc., hereby disclaims all copyright interest in the program
`Gnomovision' (which makes passes at compilers) written by James Hacker.
<signature of Ty Coon>, 1 April 1989
Ty Coon, President of Vice
This General Public License does not permit incorporating your program into
proprietary programs. If your program is a subroutine library, you may
consider it more useful to permit linking proprietary applications with the
library. If this is what you want to do, use the GNU Library General
Public License instead of this License.
AMDiS/ChangeLog deleted 100644 → 0
View file @ 2ddb447b
Rev 1210:
* In ganz AMDiS Variablen- und Funktionsnamen von "FESpace" nach
"FeSpace" geändert. Dies betrifft insbesondere "getFESpace()",
das nun "getFeSpace()" heißt.
* ProblemVec::getRHS() -> ProblemVec::getRhs()
Rev 1231:
* Im Operator-Konstruktor dürfen die Flags MATRIX_OPERATOR und
VECTOR_OPERATOR nicht mehr angegeben werden. Sollten diese gesetzt sein,
so compiliert das Programm noch, aber es wird eine entsprechende
Fehlermeldung ausgegeben und das Programm bricht ab.
AMDiS/HOWTO_cmake.html deleted 100644 → 0
View file @ 2ddb447b
<html>
<head>
<title> Using AMDiS with cmake </title>
<style type="text/css" >
.desc { background-color:#E0E0E0; margin-left:100px }
</style >
</head>
<body>
<h1> Using AMDiS with cmake </h1>
With this short page, I will show you, how to use the cmake buildsystem with AMDiS. The introduction consists of two main parts:
<ol>
<li> <a href="#compiling" > compiling and installing AMDiS with CMake </a ></li>
<li> <a href="#using" > using the cmake installed AMDiS in your project </a ></li>
<li> <a href="#faq" > some frequently asked questions </a ></li>
</ol>
<h2> <a name="compiling" > Compiling and installing AMDiS with CMake </a > </h2>
<h3> configure </h3>
There are 3 different configure tools for CMake:
<ul> <li> cmake (non interactive) </li>
<li> ccmake (interactive on command line) </li>
<li> cmake-gui (qt-based gui) </li></ul>
<p>I will use the cmake and ccmake. The autoconf/automake implementation was used directly inside the AMDiS source directory (i.e. the directory you get through svn). To use the CMake buildsystem, I recommend a different directory structure for building and compiling AMDiS. The script <a href="https://gforge.zih.tu-dresden.de/frs/download.php/34/getamdis_cmake.sh" >getamdis_cmake.sh</a>, which can be found on <ah ref="https://gforge.zih.tu-dresden.de" >gforge.zih.tu-dresden.de</a>, creates such a directory structure.</p>
Assume, you have AMDiS downloaded in the directory
<p class="desc" >
/home/joe/work/
</p>
, the AMDiS source directory is
<p class="desc">
/home/joe/work/amdis/AMDiS
</p>
. To configure and compile AMDiS I recommend to create a directory
<p class="desc">
/home/joe/work/amdis_build
</p>
and run
<p class="desc">
cd /home/joe/work/amdis_build<br>
cmake -DCMAKE_INSTALL_PREFIX=${HOME}/programs/ ../amdis/AMDiS
</p>
Compilation and installation is the same as with automake/autoconf:
<p class="desc">
make ; make install
</p>
The last command will install AMDiS to /home/joe/programs
<a href="#config_fast_and_simple" >fast and simple configuration </a>
<a href="#config_with_options" >configuration with options </a>
If you only want to build with standard options, you can simply run
<verbatim> cmake . </verbatim>
<h2> <a name="using" > Using the cmake installed AMDiS in your project </a > </h2>
A cmake-project consists of the source files and a file CMakeLists.txt, which contains a description of needed libraries, headers and programs. If you have a simple project with one program "fooProg", which have to compile only one source file "src/foo.cc", your CMakeLists.txt consist of the following lines:
<p class="desc" >
project(projectName) <br>
cmake_minimum_required(VERSION 2.8)<br><br>
find_package(AMDiS REQUIRED)<br>
if(AMDiS_FOUND)<br>
include(${AMDiS_USE_FILE})<br>
add_executable(fooProg src/foo.cc)<br>
target_link_libraries(fooProg ${AMDIS_LIBRARIES})<br>
endif(AMDiS_FOUND)<br>
</p >
The first two lines
<p class="desc" >
project(projectName) <br>
cmake_minimum_required(VERSION 2.8)
</p >
tell cmake the name of your project and that you whish to use only cmake versions newer than 2.8.<br>
The line
<p class="desc" >
find_package(AMDiS REQUIRED)
</p >
tells cmake, that you want to use AMDiS and it should complain if AMDiS was not found. CMake will print an error message, bu will not stop the execution! With the command
<p class="desc" >
include(${AMDiS_USE_FILE})
</p >
we read an AMDiS specific configuration file, which sets some compilerflags and adds the include directorys. The program is added with
<p class="desc" >
add_executable(fooProg src/foo.cc)
</p >
and we have to tell cmake, that we need the library amdis and each library amdis depends on. This is done with the command
<p class="desc" >
target_link_libraries(fooProg ${AMDIS_LIBRARIES})
</p >
If cmake does not find AMDiS, you have to set the variable AMDIS_DIR to the directory containing the file AMDiSConfig.cmake. This file resides in
<p class="desc" >
$CMAKE_INSTALL_PREFIX/share/amdis/
</p >
<h2 > <a name="faq" > Frequently asked questions </a ></h2 >
<h3 > Boost </h3>
If you have different boost versions on your system and you do not want to use the standard version in /usr/lib and /usr/include, you should set the environment variable BOOST_ROOT to your boost-installation.
<h3 > I will not set the AMDIS_DIR in every project. </h3 >
If you always use the same AMDiS directory, you can add the directory to your PATH variable.
</body>
</html>
AMDiS/INSTALL deleted 100644 → 0
View file @ 2ddb447b
Installation Instructions
*************************
Copyright (C) 1994, 1995, 1996, 1999, 2000, 2001, 2002, 2004, 2005 Free
Software Foundation, Inc.
This file is free documentation; the Free Software Foundation gives
unlimited permission to copy, distribute and modify it.
Basic Installation
==================
These are generic installation instructions.
The `configure' shell script attempts to guess correct values for
various system-dependent variables used during compilation. It uses
those values to create a `Makefile' in each directory of the package.
It may also create one or more `.h' files containing system-dependent
definitions. Finally, it creates a shell script `config.status' that
you can run in the future to recreate the current configuration, and a
file `config.log' containing compiler output (useful mainly for
debugging `configure').
It can also use an optional file (typically called `config.cache'
and enabled with `--cache-file=config.cache' or simply `-C') that saves
the results of its tests to speed up reconfiguring. (Caching is
disabled by default to prevent problems with accidental use of stale
cache files.)
If you need to do unusual things to compile the package, please try
to figure out how `configure' could check whether to do them, and mail
diffs or instructions to the address given in the `README' so they can
be considered for the next release. If you are using the cache, and at
some point `config.cache' contains results you don't want to keep, you
may remove or edit it.
The file `configure.ac' (or `configure.in') is used to create
`configure' by a program called `autoconf'. You only need
`configure.ac' if you want to change it or regenerate `configure' using
a newer version of `autoconf'.
The simplest way to compile this package is:
1. `cd' to the directory containing the package's source code and type
`./configure' to configure the package for your system. If you're
using `csh' on an old version of System V, you might need to type
`sh ./configure' instead to prevent `csh' from trying to execute
`configure' itself.
Running `configure' takes awhile. While running, it prints some
messages telling which features it is checking for.
2. Type `make' to compile the package.
3. Optionally, type `make check' to run any self-tests that come with
the package.
4. Type `make install' to install the programs and any data files and
documentation.
5. You can remove the program binaries and object files from the
source code directory by typing `make clean'. To also remove the
files that `configure' created (so you can compile the package for
a different kind of computer), type `make distclean'. There is
also a `make maintainer-clean' target, but that is intended mainly
for the package's developers. If you use it, you may have to get
all sorts of other programs in order to regenerate files that came
with the distribution.
Compilers and Options
=====================
Some systems require unusual options for compilation or linking that the
`configure' script does not know about. Run `./configure --help' for
details on some of the pertinent environment variables.
You can give `configure' initial values for configuration parameters
by setting variables in the command line or in the environment. Here
is an example:
./configure CC=c89 CFLAGS=-O2 LIBS=-lposix
*Note Defining Variables::, for more details.
Compiling For Multiple Architectures
====================================
You can compile the package for more than one kind of computer at the
same time, by placing the object files for each architecture in their
own directory. To do this, you must use a version of `make' that
supports the `VPATH' variable, such as GNU `make'. `cd' to the
directory where you want the object files and executables to go and run
the `configure' script. `configure' automatically checks for the
source code in the directory that `configure' is in and in `..'.
If you have to use a `make' that does not support the `VPATH'
variable, you have to compile the package for one architecture at a
time in the source code directory. After you have installed the
package for one architecture, use `make distclean' before reconfiguring
for another architecture.
Installation Names
==================
By default, `make install' installs the package's commands under
`/usr/local/bin', include files under `/usr/local/include', etc. You
can specify an installation prefix other than `/usr/local' by giving
`configure' the option `--prefix=PREFIX'.
You can specify separate installation prefixes for
architecture-specific files and architecture-independent files. If you
pass the option `--exec-prefix=PREFIX' to `configure', the package uses
PREFIX as the prefix for installing programs and libraries.
Documentation and other data files still use the regular prefix.
In addition, if you use an unusual directory layout you can give
options like `--bindir=DIR' to specify different values for particular
kinds of files. Run `configure --help' for a list of the directories
you can set and what kinds of files go in them.
If the package supports it, you can cause programs to be installed
with an extra prefix or suffix on their names by giving `configure' the
option `--program-prefix=PREFIX' or `--program-suffix=SUFFIX'.
Optional Features
=================
Some packages pay attention to `--enable-FEATURE' options to
`configure', where FEATURE indicates an optional part of the package.
They may also pay attention to `--with-PACKAGE' options, where PACKAGE
is something like `gnu-as' or `x' (for the X Window System). The
`README' should mention any `--enable-' and `--with-' options that the
package recognizes.
For packages that use the X Window System, `configure' can usually
find the X include and library files automatically, but if it doesn't,
you can use the `configure' options `--x-includes=DIR' and
`--x-libraries=DIR' to specify their locations.
Specifying the System Type
==========================
There may be some features `configure' cannot figure out automatically,
but needs to determine by the type of machine the package will run on.
Usually, assuming the package is built to be run on the _same_
architectures, `configure' can figure that out, but if it prints a
message saying it cannot guess the machine type, give it the
`--build=TYPE' option. TYPE can either be a short name for the system
type, such as `sun4', or a canonical name which has the form:
CPU-COMPANY-SYSTEM
where SYSTEM can have one of these forms:
OS KERNEL-OS
See the file `config.sub' for the possible values of each field. If
`config.sub' isn't included in this package, then this package doesn't
need to know the machine type.
If you are _building_ compiler tools for cross-compiling, you should
use the option `--target=TYPE' to select the type of system they will
produce code for.
If you want to _use_ a cross compiler, that generates code for a
platform different from the build platform, you should specify the
"host" platform (i.e., that on which the generated programs will
eventually be run) with `--host=TYPE'.
Sharing Defaults
================
If you want to set default values for `configure' scripts to share, you
can create a site shell script called `config.site' that gives default
values for variables like `CC', `cache_file', and `prefix'.
`configure' looks for `PREFIX/share/config.site' if it exists, then
`PREFIX/etc/config.site' if it exists. Or, you can set the
`CONFIG_SITE' environment variable to the location of the site script.
A warning: not all `configure' scripts look for a site script.
Defining Variables
==================
Variables not defined in a site shell script can be set in the
environment passed to `configure'. However, some packages may run
configure again during the build, and the customized values of these
variables may be lost. In order to avoid this problem, you should set
them in the `configure' command line, using `VAR=value'. For example:
./configure CC=/usr/local2/bin/gcc
causes the specified `gcc' to be used as the C compiler (unless it is
overridden in the site shell script). Here is a another example:
/bin/bash ./configure CONFIG_SHELL=/bin/bash
Here the `CONFIG_SHELL=/bin/bash' operand causes subsequent
configuration-related scripts to be executed by `/bin/bash'.
`configure' Invocation
======================
`configure' recognizes the following options to control how it operates.
`--help'
`-h'
Print a summary of the options to `configure', and exit.
`--version'
`-V'
Print the version of Autoconf used to generate the `configure'
script, and exit.
`--cache-file=FILE'
Enable the cache: use and save the results of the tests in FILE,
traditionally `config.cache'. FILE defaults to `/dev/null' to
disable caching.
`--config-cache'
`-C'
Alias for `--cache-file=config.cache'.
`--quiet'
`--silent'
`-q'
Do not print messages saying which checks are being made. To
suppress all normal output, redirect it to `/dev/null' (any error
messages will still be shown).
`--srcdir=DIR'
Look for the package's source code in directory DIR. Usually
`configure' can determine that directory automatically.
`configure' also accepts some other, not widely useful, options. Run
`configure --help' for more details.
AMDiS/Makefile.am deleted 100644 → 0
View file @ 2ddb447b
SUBDIRS = src lib
AMDiS/Makefile.in deleted 100644 → 0
View file @ 2ddb447b
# Makefile.in generated by automake 1.9.6 from Makefile.am.
# @configure_input@
# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
# 2003, 2004, 2005 Free Software Foundation, Inc.
# This Makefile.in is free software; the Free Software Foundation
# gives unlimited permission to copy and/or distribute it,
# with or without modifications, as long as this notice is preserved.
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
# PARTICULAR PURPOSE.
@SET_MAKE@
srcdir = @srcdir@
top_srcdir = @top_srcdir@
VPATH = @srcdir@
pkgdatadir = $(datadir)/@PACKAGE@
pkglibdir = $(libdir)/@PACKAGE@
pkgincludedir = $(includedir)/@PACKAGE@
top_builddir = .
am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
INSTALL = @INSTALL@
install_sh_DATA = $(install_sh) -c -m 644
install_sh_PROGRAM = $(install_sh) -c
install_sh_SCRIPT = $(install_sh) -c
INSTALL_HEADER = $(INSTALL_DATA)
transform = $(program_transform_name)
NORMAL_INSTALL = :
PRE_INSTALL = :
POST_INSTALL = :
NORMAL_UNINSTALL = :
PRE_UNINSTALL = :
POST_UNINSTALL = :
build_triplet = @build@
host_triplet = @host@
DIST_COMMON = README $(am__configure_deps) $(srcdir)/Makefile.am \
$(srcdir)/Makefile.in $(top_srcdir)/configure AUTHORS COPYING \
ChangeLog INSTALL NEWS config.guess config.sub depcomp \
install-sh ltmain.sh missing
subdir = .
ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
am__aclocal_m4_deps = $(top_srcdir)/configure.ac
am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
$(ACLOCAL_M4)
am__CONFIG_DISTCLEAN_FILES = config.status config.cache config.log \
configure.lineno configure.status.lineno
mkinstalldirs = $(install_sh) -d
CONFIG_CLEAN_FILES =
SOURCES =
DIST_SOURCES =
RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \
html-recursive info-recursive install-data-recursive \
install-exec-recursive install-info-recursive \
install-recursive installcheck-recursive installdirs-recursive \
pdf-recursive ps-recursive uninstall-info-recursive \
uninstall-recursive
ETAGS = etags
CTAGS = ctags
DIST_SUBDIRS = $(SUBDIRS)
DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
distdir = $(PACKAGE)-$(VERSION)
top_distdir = $(distdir)
am__remove_distdir = \
{ test ! -d $(distdir) \
|| { find $(distdir) -type d ! -perm -200 -exec chmod u+w {} ';' \
&& rm -fr $(distdir); }; }
DIST_ARCHIVES = $(distdir).tar.gz
GZIP_ENV = --best
distuninstallcheck_listfiles = find . -type f -print
distcleancheck_listfiles = find . -type f -print
ACLOCAL = @ACLOCAL@
AMDEP_FALSE = @AMDEP_FALSE@
AMDEP_TRUE = @AMDEP_TRUE@
AMDIS_DEBUG_FALSE = @AMDIS_DEBUG_FALSE@
AMDIS_DEBUG_TRUE = @AMDIS_DEBUG_TRUE@
AMDIS_INTEL_FALSE = @AMDIS_INTEL_FALSE@
AMDIS_INTEL_TRUE = @AMDIS_INTEL_TRUE@
AMDIS_OPENMP_FALSE = @AMDIS_OPENMP_FALSE@
AMDIS_OPENMP_TRUE = @AMDIS_OPENMP_TRUE@
AMTAR = @AMTAR@
AR = @AR@
AUTOCONF = @AUTOCONF@
AUTOHEADER = @AUTOHEADER@
AUTOMAKE = @AUTOMAKE@
AWK = @AWK@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CFLAGS = @CFLAGS@
CPP = @CPP@
CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXCPP = @CXXCPP@
CXXDEPMODE = @CXXDEPMODE@
CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEFS = @DEFS@
DEPDIR = @DEPDIR@
DUNE_DIR = @DUNE_DIR@
ECHO = @ECHO@
ECHO_C = @ECHO_C@
ECHO_N = @ECHO_N@
ECHO_T = @ECHO_T@
EGREP = @EGREP@
ENABLE_BOOST_FALSE = @ENABLE_BOOST_FALSE@
ENABLE_BOOST_TRUE = @ENABLE_BOOST_TRUE@
ENABLE_DUNE_FALSE = @ENABLE_DUNE_FALSE@
ENABLE_DUNE_TRUE = @ENABLE_DUNE_TRUE@
ENABLE_MKL_FALSE = @ENABLE_MKL_FALSE@
ENABLE_MKL_TRUE = @ENABLE_MKL_TRUE@
ENABLE_UMFPACK_FALSE = @ENABLE_UMFPACK_FALSE@
ENABLE_UMFPACK_TRUE = @ENABLE_UMFPACK_TRUE@
EXEEXT = @EXEEXT@
F77 = @F77@
FFLAGS = @FFLAGS@
INSTALL_DATA = @INSTALL_DATA@
INSTALL_PROGRAM = @INSTALL_PROGRAM@
INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
LIBS = @LIBS@
LIBTOOL = @LIBTOOL@
LN_S = @LN_S@
LTLIBOBJS = @LTLIBOBJS@
MAINT = @MAINT@
MAINTAINER_MODE_FALSE = @MAINTAINER_MODE_FALSE@
MAINTAINER_MODE_TRUE = @MAINTAINER_MODE_TRUE@
MAKEINFO = @MAKEINFO@
MPI_DIR = @MPI_DIR@
OBJEXT = @OBJEXT@
OPENMP_FLAG = @OPENMP_FLAG@
PACKAGE = @PACKAGE@
PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
PACKAGE_NAME = @PACKAGE_NAME@
PACKAGE_STRING = @PACKAGE_STRING@
PACKAGE_TARNAME = @PACKAGE_TARNAME@
PACKAGE_VERSION = @PACKAGE_VERSION@
PATH_SEPARATOR = @PATH_SEPARATOR@
PETSC_DIR = @PETSC_DIR@
RANLIB = @RANLIB@
SET_MAKE = @SET_MAKE@
SHELL = @SHELL@
STRIP = @STRIP@
USE_PARALLEL_AMDIS_FALSE = @USE_PARALLEL_AMDIS_FALSE@
USE_PARALLEL_AMDIS_TRUE = @USE_PARALLEL_AMDIS_TRUE@
USE_PARALLEL_DOMAIN_AMDIS_FALSE = @USE_PARALLEL_DOMAIN_AMDIS_FALSE@
USE_PARALLEL_DOMAIN_AMDIS_TRUE = @USE_PARALLEL_DOMAIN_AMDIS_TRUE@
USE_PETSC_DEV_FALSE = @USE_PETSC_DEV_FALSE@
USE_PETSC_DEV_TRUE = @USE_PETSC_DEV_TRUE@
USE_ZOLTAN_FALSE = @USE_ZOLTAN_FALSE@
USE_ZOLTAN_TRUE = @USE_ZOLTAN_TRUE@
VERSION = @VERSION@
ZOLTAN_DIR = @ZOLTAN_DIR@
ac_ct_AR = @ac_ct_AR@
ac_ct_CC = @ac_ct_CC@
ac_ct_CXX = @ac_ct_CXX@
ac_ct_F77 = @ac_ct_F77@
ac_ct_RANLIB = @ac_ct_RANLIB@
ac_ct_STRIP = @ac_ct_STRIP@
am__fastdepCC_FALSE = @am__fastdepCC_FALSE@
am__fastdepCC_TRUE = @am__fastdepCC_TRUE@
am__fastdepCXX_FALSE = @am__fastdepCXX_FALSE@
am__fastdepCXX_TRUE = @am__fastdepCXX_TRUE@
am__include = @am__include@
am__leading_dot = @am__leading_dot@
am__quote = @am__quote@
am__tar = @am__tar@
am__untar = @am__untar@
bindir = @bindir@
build = @build@
build_alias = @build_alias@
build_cpu = @build_cpu@
build_os = @build_os@
build_vendor = @build_vendor@
datadir = @datadir@
exec_prefix = @exec_prefix@
host = @host@
host_alias = @host_alias@
host_cpu = @host_cpu@
host_os = @host_os@
host_vendor = @host_vendor@
includedir = @includedir@
infodir = @infodir@
install_sh = @install_sh@
libdir = @libdir@
libexecdir = @libexecdir@
localstatedir = @localstatedir@
mandir = @mandir@
mkdir_p = @mkdir_p@
oldincludedir = @oldincludedir@
prefix = @prefix@
program_transform_name = @program_transform_name@
sbindir = @sbindir@
sharedstatedir = @sharedstatedir@
sysconfdir = @sysconfdir@
target_alias = @target_alias@
SUBDIRS = src lib
all: all-recursive
.SUFFIXES:
am--refresh:
@:
$(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(am__configure_deps)
@for dep in $?; do \
case '$(am__configure_deps)' in \
*$$dep*) \
echo ' cd $(srcdir) && $(AUTOMAKE) --gnu '; \
cd $(srcdir) && $(AUTOMAKE) --gnu \
&& exit 0; \
exit 1;; \
esac; \
done; \
echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu Makefile'; \
cd $(top_srcdir) && \
$(AUTOMAKE) --gnu Makefile
.PRECIOUS: Makefile
Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
@case '$?' in \
*config.status*) \
echo ' $(SHELL) ./config.status'; \
$(SHELL) ./config.status;; \
*) \
echo ' cd $(top_builddir) && $(SHELL) ./config.status $@ $(am__depfiles_maybe)'; \
cd $(top_builddir) && $(SHELL) ./config.status $@ $(am__depfiles_maybe);; \
esac;
$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
$(SHELL) ./config.status --recheck
$(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps)
cd $(srcdir) && $(AUTOCONF)
$(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps)
cd $(srcdir) && $(ACLOCAL) $(ACLOCAL_AMFLAGS)
mostlyclean-libtool:
-rm -f *.lo
clean-libtool:
-rm -rf .libs _libs
distclean-libtool:
-rm -f libtool
uninstall-info-am:
# This directory's subdirectories are mostly independent; you can cd
# into them and run `make' without going through this Makefile.
# To change the values of `make' variables: instead of editing Makefiles,
# (1) if the variable is set in `config.status', edit `config.status'
# (which will cause the Makefiles to be regenerated when you run `make');
# (2) otherwise, pass the desired values on the `make' command line.
$(RECURSIVE_TARGETS):
@failcom='exit 1'; \
for f in x $$MAKEFLAGS; do \
case $$f in \
*=* | --[!k]*);; \
*k*) failcom='fail=yes';; \
esac; \
done; \
dot_seen=no; \
target=`echo $@ | sed s/-recursive//`; \
list='$(SUBDIRS)'; for subdir in $$list; do \
echo "Making $$target in $$subdir"; \
if test "$$subdir" = "."; then \
dot_seen=yes; \
local_target="$$target-am"; \
else \
local_target="$$target"; \
fi; \
(cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
|| eval $$failcom; \
done; \
if test "$$dot_seen" = "no"; then \
$(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \
fi; test -z "$$fail"
mostlyclean-recursive clean-recursive distclean-recursive \
maintainer-clean-recursive:
@failcom='exit 1'; \
for f in x $$MAKEFLAGS; do \
case $$f in \
*=* | --[!k]*);; \
*k*) failcom='fail=yes';; \
esac; \
done; \
dot_seen=no; \
case "$@" in \
distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \
*) list='$(SUBDIRS)' ;; \
esac; \
rev=''; for subdir in $$list; do \
if test "$$subdir" = "."; then :; else \
rev="$$subdir $$rev"; \
fi; \
done; \
rev="$$rev ."; \
target=`echo $@ | sed s/-recursive//`; \
for subdir in $$rev; do \
echo "Making $$target in $$subdir"; \
if test "$$subdir" = "."; then \
local_target="$$target-am"; \
else \
local_target="$$target"; \
fi; \
(cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
|| eval $$failcom; \
done && test -z "$$fail"
tags-recursive:
list='$(SUBDIRS)'; for subdir in $$list; do \
test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \
done
ctags-recursive:
list='$(SUBDIRS)'; for subdir in $$list; do \
test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \
done
ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
unique=`for i in $$list; do \
if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
done | \
$(AWK) ' { files[$$0] = 1; } \
END { for (i in files) print i; }'`; \
mkid -fID $$unique
tags: TAGS
TAGS: tags-recursive $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
$(TAGS_FILES) $(LISP)
tags=; \
here=`pwd`; \
if ($(ETAGS) --etags-include --version) >/dev/null 2>&1; then \
include_option=--etags-include; \
empty_fix=.; \
else \
include_option=--include; \
empty_fix=; \
fi; \
list='$(SUBDIRS)'; for subdir in $$list; do \
if test "$$subdir" = .; then :; else \
test ! -f $$subdir/TAGS || \
tags="$$tags $$include_option=$$here/$$subdir/TAGS"; \
fi; \
done; \
list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
unique=`for i in $$list; do \
if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
done | \
$(AWK) ' { files[$$0] = 1; } \
END { for (i in files) print i; }'`; \
if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
test -n "$$unique" || unique=$$empty_fix; \
$(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
$$tags $$unique; \
fi
ctags: CTAGS
CTAGS: ctags-recursive $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
$(TAGS_FILES) $(LISP)
tags=; \
here=`pwd`; \
list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
unique=`for i in $$list; do \
if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
done | \
$(AWK) ' { files[$$0] = 1; } \
END { for (i in files) print i; }'`; \
test -z "$(CTAGS_ARGS)$$tags$$unique" \
|| $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
$$tags $$unique
GTAGS:
here=`$(am__cd) $(top_builddir) && pwd` \
&& cd $(top_srcdir) \
&& gtags -i $(GTAGS_ARGS) $$here
distclean-tags:
-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
distdir: $(DISTFILES)
$(am__remove_distdir)
mkdir $(distdir)
@srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`; \
topsrcdirstrip=`echo "$(top_srcdir)" | sed 's|.|.|g'`; \
list='$(DISTFILES)'; for file in $$list; do \
case $$file in \
$(srcdir)/*) file=`echo "$$file" | sed "s|^$$srcdirstrip/||"`;; \
$(top_srcdir)/*) file=`echo "$$file" | sed "s|^$$topsrcdirstrip/|$(top_builddir)/|"`;; \
esac; \
if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \
if test "$$dir" != "$$file" && test "$$dir" != "."; then \
dir="/$$dir"; \
$(mkdir_p) "$(distdir)$$dir"; \
else \
dir=''; \
fi; \
if test -d $$d/$$file; then \
if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
fi; \
cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
else \
test -f $(distdir)/$$file \
|| cp -p $$d/$$file $(distdir)/$$file \
|| exit 1; \
fi; \
done
list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
if test "$$subdir" = .; then :; else \
test -d "$(distdir)/$$subdir" \
|| $(mkdir_p) "$(distdir)/$$subdir" \
|| exit 1; \
distdir=`$(am__cd) $(distdir) && pwd`; \
top_distdir=`$(am__cd) $(top_distdir) && pwd`; \
(cd $$subdir && \
$(MAKE) $(AM_MAKEFLAGS) \
top_distdir="$$top_distdir" \
distdir="$$distdir/$$subdir" \
distdir) \
|| exit 1; \
fi; \
done
-find $(distdir) -type d ! -perm -777 -exec chmod a+rwx {} \; -o \
! -type d ! -perm -444 -links 1 -exec chmod a+r {} \; -o \
! -type d ! -perm -400 -exec chmod a+r {} \; -o \
! -type d ! -perm -444 -exec $(SHELL) $(install_sh) -c -m a+r {} {} \; \
|| chmod -R a+r $(distdir)
dist-gzip: distdir
tardir=$(distdir) && $(am__tar) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).tar.gz
$(am__remove_distdir)
dist-bzip2: distdir
tardir=$(distdir) && $(am__tar) | bzip2 -9 -c >$(distdir).tar.bz2
$(am__remove_distdir)
dist-tarZ: distdir
tardir=$(distdir) && $(am__tar) | compress -c >$(distdir).tar.Z
$(am__remove_distdir)
dist-shar: distdir
shar $(distdir) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).shar.gz
$(am__remove_distdir)
dist-zip: distdir
-rm -f $(distdir).zip
zip -rq $(distdir).zip $(distdir)
$(am__remove_distdir)
dist dist-all: distdir
tardir=$(distdir) && $(am__tar) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).tar.gz
$(am__remove_distdir)
# This target untars the dist file and tries a VPATH configuration. Then
# it guarantees that the distribution is self-contained by making another
# tarfile.
distcheck: dist
case '$(DIST_ARCHIVES)' in \
*.tar.gz*) \
GZIP=$(GZIP_ENV) gunzip -c $(distdir).tar.gz | $(am__untar) ;;\
*.tar.bz2*) \
bunzip2 -c $(distdir).tar.bz2 | $(am__untar) ;;\
*.tar.Z*) \
uncompress -c $(distdir).tar.Z | $(am__untar) ;;\
*.shar.gz*) \
GZIP=$(GZIP_ENV) gunzip -c $(distdir).shar.gz | unshar ;;\
*.zip*) \
unzip $(distdir).zip ;;\
esac
chmod -R a-w $(distdir); chmod a+w $(distdir)
mkdir $(distdir)/_build
mkdir $(distdir)/_inst
chmod a-w $(distdir)
dc_install_base=`$(am__cd) $(distdir)/_inst && pwd | sed -e 's,^[^:\\/]:[\\/],/,'` \
&& dc_destdir="$${TMPDIR-/tmp}/am-dc-$$$$/" \
&& cd $(distdir)/_build \
&& ../configure --srcdir=.. --prefix="$$dc_install_base" \
$(DISTCHECK_CONFIGURE_FLAGS) \
&& $(MAKE) $(AM_MAKEFLAGS) \
&& $(MAKE) $(AM_MAKEFLAGS) dvi \
&& $(MAKE) $(AM_MAKEFLAGS) check \
&& $(MAKE) $(AM_MAKEFLAGS) install \
&& $(MAKE) $(AM_MAKEFLAGS) installcheck \
&& $(MAKE) $(AM_MAKEFLAGS) uninstall \
&& $(MAKE) $(AM_MAKEFLAGS) distuninstallcheck_dir="$$dc_install_base" \
distuninstallcheck \
&& chmod -R a-w "$$dc_install_base" \
&& ({ \
(cd ../.. && umask 077 && mkdir "$$dc_destdir") \
&& $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" install \
&& $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" uninstall \
&& $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" \
distuninstallcheck_dir="$$dc_destdir" distuninstallcheck; \
} || { rm -rf "$$dc_destdir"; exit 1; }) \
&& rm -rf "$$dc_destdir" \
&& $(MAKE) $(AM_MAKEFLAGS) dist \
&& rm -rf $(DIST_ARCHIVES) \
&& $(MAKE) $(AM_MAKEFLAGS) distcleancheck
$(am__remove_distdir)
@(echo "$(distdir) archives ready for distribution: "; \
list='$(DIST_ARCHIVES)'; for i in $$list; do echo $$i; done) | \
sed -e '1{h;s/./=/g;p;x;}' -e '$${p;x;}'
distuninstallcheck:
@cd $(distuninstallcheck_dir) \
&& test `$(distuninstallcheck_listfiles) | wc -l` -le 1 \
|| { echo "ERROR: files left after uninstall:" ; \
if test -n "$(DESTDIR)"; then \
echo " (check DESTDIR support)"; \
fi ; \
$(distuninstallcheck_listfiles) ; \
exit 1; } >&2
distcleancheck: distclean
@if test '$(srcdir)' = . ; then \
echo "ERROR: distcleancheck can only run from a VPATH build" ; \
exit 1 ; \
fi
@test `$(distcleancheck_listfiles) | wc -l` -eq 0 \
|| { echo "ERROR: files left in build directory after distclean:" ; \
$(distcleancheck_listfiles) ; \
exit 1; } >&2
check-am: all-am
check: check-recursive
all-am: Makefile
installdirs: installdirs-recursive
installdirs-am:
install: install-recursive
install-exec: install-exec-recursive
install-data: install-data-recursive
uninstall: uninstall-recursive
install-am: all-am
@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
installcheck: installcheck-recursive
install-strip:
$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
`test -z '$(STRIP)' || \
echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
mostlyclean-generic:
clean-generic:
distclean-generic:
-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
maintainer-clean-generic:
@echo "This command is intended for maintainers to use"
@echo "it deletes files that may require special tools to rebuild."
clean: clean-recursive
clean-am: clean-generic clean-libtool mostlyclean-am
distclean: distclean-recursive
-rm -f $(am__CONFIG_DISTCLEAN_FILES)
-rm -f Makefile
distclean-am: clean-am distclean-generic distclean-libtool \
distclean-tags
dvi: dvi-recursive
dvi-am:
html: html-recursive
info: info-recursive
info-am:
install-data-am:
install-exec-am:
install-info: install-info-recursive
install-man:
installcheck-am:
maintainer-clean: maintainer-clean-recursive
-rm -f $(am__CONFIG_DISTCLEAN_FILES)
-rm -rf $(top_srcdir)/autom4te.cache
-rm -f Makefile
maintainer-clean-am: distclean-am maintainer-clean-generic
mostlyclean: mostlyclean-recursive
mostlyclean-am: mostlyclean-generic mostlyclean-libtool
pdf: pdf-recursive
pdf-am:
ps: ps-recursive
ps-am:
uninstall-am: uninstall-info-am
uninstall-info: uninstall-info-recursive
.PHONY: $(RECURSIVE_TARGETS) CTAGS GTAGS all all-am am--refresh check \
check-am clean clean-generic clean-libtool clean-recursive \
ctags ctags-recursive dist dist-all dist-bzip2 dist-gzip \
dist-shar dist-tarZ dist-zip distcheck distclean \
distclean-generic distclean-libtool distclean-recursive \
distclean-tags distcleancheck distdir distuninstallcheck dvi \
dvi-am html html-am info info-am install install-am \
install-data install-data-am install-exec install-exec-am \
install-info install-info-am install-man install-strip \
installcheck installcheck-am installdirs installdirs-am \
maintainer-clean maintainer-clean-generic \
maintainer-clean-recursive mostlyclean mostlyclean-generic \
mostlyclean-libtool mostlyclean-recursive pdf pdf-am ps ps-am \
tags tags-recursive uninstall uninstall-am uninstall-info-am
# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT:
AMDiS/NEWS deleted 100644 → 0
View file @ 2ddb447b
AMDiS/README
View file @ 8272e4a7
================== Install AMDiS ===================
Testing AMDiS
--------------
To install AMDiS run the following commands:
testing the compilation of amdis is done after configuring the binary using cmake. The compile test is run using
ctest -V -S CTestScript.cmake
./configure --prefix=`pwd` [--enable-debug]
[--enable-intel]
[--with-mpi=<MPI-DIR>]
[--with-parmetis]
(omit the argument -V to remove the output)
make install
Note that for debugging your application you should enable the flag
--enable-debug. If you do not need debugging information but, instead,
your application should run as fast as possible, do not set this flag.
The runtime will increase by factor 5 to 6 without --enable-debug!
================== Compile AMDiS on mars ===================
1) Load the Inter compiler:
module load icc
2) Change to the directory AMDiS/lib/ParMetis-3.1
3) Compile ParMETIS with:
make CC=icc LD=icc
4) Change to the AMDiS directory
5) Run the configure script:
./configure --prefix=`pwd` --enable-intel --enable-parmetis
You can also enabel --enable-debug. Enabling MPI using --with-mpi
does not work on mars and it is not necessary to use this parameter
to compile AMDiS with MPI on mars. Note taht is is also possible to
compile with gcc (just omit --enable-intel), but the result is less
performant. Compiling with the Intel compiler results in a huge
number of warnings. Just ignore them.
6) Start compiling with:
make install
7) To compile the demos you have to edit the Makefile in the demo
directory. At the beginning of the file you will find several
parameters, which you have to define in order to compiler the demos
properly.
================== Compile AMDiS on deimos ===================
1) Load MPI support for the GNU compiler:
module load openmpi
2) Change to the directory AMDiS/lib/ParMetis-3.1
3) Compile ParMETIS with:
make
4) Change to the AMDiS directory
5) Run the configure script:
./configure --prefix=`pwd` --with-mpi=/licsoft/libraries/openmpi/1.2.6/64bit --enable-parmetis
You may also enable --enable-debug.
6) Start compiling with:
make install
7) To compile the demos you have to edit the Makefile in the demo
directory. At the beginning of the file you will find several
parameters, which you have to define in order to compiler the demos
properly.
================== Remake AMDiS' make system ===================
If you have added a new source file or you want to change something
on the automake-system, you have to rerun the following commands:
libtoolize --copy --force
aclocal
autoconf
automake --copy --add-missing
Hint: This test only compiles the given configuration from a previous cmake run. If you want to test the demos, initfiles and so on, you have to check out https://fusionforge.zih.tu-dresden.de/svn/amdis/trunk/tools/test and have a look at the README there.
AMDiS/aclocal.m4 deleted 100644 → 0
View file @ 2ddb447b
This diff is collapsed.
AMDiS/autogen.sh deleted 100755 → 0
View file @ 2ddb447b
#!/bin/sh
echo "--> Running aclocal"
aclocal
if test "$?" != "0" ; then
echo "*** aclocal failed"
exit 1
fi
if test "`grep AC_CONFIG_HEADER configure.ac`" != "" -o \
"`grep AM_CONFIG_HEADER configure.ac`" != "" ; then
# if we use CONFIG_HEADER, then make sure to run autoheader
echo "--> Running autoheader"
autoheader
if test "$?" != "0" ; then
echo "*** autoheader failed"
exit 1
fi
else
echo "--> autoheader not needed"
fi
echo "--> Running autoconf"
autoconf
if test "$?" != "0" ; then
echo "*** autoconf failed"
exit 1
fi
echo "--> Running libtoolize"
libtoolize --automake --copy
if test "$?" != "0" ; then
echo "*** libtoolize failed"
exit 1
fi
echo "--> Running automake"
automake -a --copy --include-deps
if test "$?" != "0" ; then
echo "*** automake failed"
exit 1
fi
echo;
echo "Running ./configure $@"
echo;
./configure $@
AMDiS/cmake/AMDIS.cmake.in 0 → 100644
View file @ 8272e4a7
set(AMDIS_NEED_CXX11 @ENABLE_CXX11@)
set(AMDIS_NEED_UMFPACK @ENABLE_UMFPACK@)
set(AMDIS_NEED_COMPRESSION @ENABLE_COMPRESSION@)
set(AMDIS_NEED_EXTENSIONS @ENABLE_EXTENSIONS@)
set(AMDIS_NEED_BASE_PROBLEMS @ENABLE_BASE_PROBLEMS@)
set(AMDIS_NEED_REINIT @ENABLE_REINIT@)
set(AMDIS_NEED_COMPOSITE_FEM @ENABLE_COMPOSITE_FEM@)
set(AMDIS_NEED_ZOLTAN @ENABLE_ZOLTAN@)
set(AMDIS_NEED_BDDCML @ENABLE_BDDCML@)
set(AMDIS_NEED_HYPRE @ENABLE_HYPRE@)
set(AMDIS_NEED_PNG @ENABLE_PNG@)
set(AMDIS_NEED_SEQ_PETSC @ENABLE_SEQ_PETSC@)
set(BUILD_SHARED_LIBS @BUILD_SHARED_LIBS@)
set(CMAKE_BUILD_TYPE @CMAKE_BUILD_TYPE@)
set(AMDIS_COMPILEFLAGS "")
set(AMDIS_INCLUDE_DIRS "")
set(AMDIS_LIBRARIES "")
if (AMDIS_NEED_CXX11)
enable_cxx11(AMDIS_NEED_CXX11 AMDIS_COMPILEFLAGS)
if (NOT AMDIS_NEED_CXX11)
message(FATAL_ERROR "AMDiS was compiled with c++11 support, but the current compiler does not support this feature!")
endif (NOT AMDIS_NEED_CXX11)
list(APPEND AMDIS_COMPILEFLAGS "-DAMDIS_HAS_CXX11=1")
else ()
list(APPEND AMDIS_COMPILEFLAGS "-DAMDIS_HAS_CXX11=0")
endif (AMDIS_NEED_CXX11)
# try to detect the AMDiS include directory
# -------------------------------------------
find_file(_AMDIS_H AMDiS.h PATHS ${AMDIS_DIR}/../../include/amdis/)
if (_AMDIS_H)
get_filename_component(AMDIS_INCLUDE_DIR ${_AMDIS_H} PATH CACHE)
list(APPEND AMDIS_INCLUDE_DIRS ${AMDIS_INCLUDE_DIR})
else ()
message(ERROR "Could not detect the AMDiS include directory. Please set the variable AMDIS_INCLUDE_DIR to the directory containing the AMDiS headers.")
endif ()
unset(_AMDIS_H CACHE)
# MTL4 libraries
# --------------------
enable_mtl4(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
# AMDiS base libraries
# --------------------
find_library(_AMDIS_LIB amdis${POSTFIX} PATHS ${AMDIS_DIR}/../../lib/amdis/)
if (_AMDIS_LIB)
list(APPEND AMDIS_LIBRARIES optimized ${_AMDIS_LIB} debug ${_AMDIS_LIB}d)
else ()
message(ERROR "Could not detect the AMDiS${POSTFIX} library. Please set the variable _AMDIS_LIB to the AMDiS${POSTFIX} library.")
endif ()
unset(_AMDIS_LIB CACHE)
# Boost libraries
# ---------------
if (NOT BOOST_ROOT)
set(BOOST_ROOT @BOOST_ROOT@)
endif (NOT BOOST_ROOT)
if (NOT BOOST_LIBRARYDIR)
set(BOOST_LIBRARYDIR @BOOST_LIBRARYDIR@)
endif (NOT BOOST_LIBRARYDIR)
enable_boost(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
# umfpack library
# --------------------
if (AMDIS_NEED_UMFPACK)
set(AMDIS_SuiteSparse_DIR @SuiteSparse_DIR@)
set(AMDIS_UMFPACK_INCLUDE_DIR @UMFPACK_INCLUDE_DIRS@)
set(AMDIS_UMFPACK_LIB_DIR ${AMDIS_UMFPACK_INCLUDE_DIR}/../include)
enable_umfpack(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
endif (AMDIS_NEED_UMFPACK)
# amdis extensions
# ----------------
if (AMDIS_NEED_EXTENSIONS)
find_library(_EXTENSIONS_LIB amdisextensions${POSTFIX} PATHS ${AMDIS_DIR}/../../lib/amdis/)
if (_EXTENSIONS_LIB)
list(APPEND AMDIS_INCLUDE_DIRS
${AMDIS_INCLUDE_DIR}/extensions
${AMDIS_INCLUDE_DIR}/extensions/nanoflann
${AMDIS_INCLUDE_DIR}/extensions/pugixml
${AMDIS_INCLUDE_DIR}/extensions/time)
list(APPEND AMDIS_COMPILEFLAGS "-DHAVE_EXTENSIONS=1")
list(APPEND AMDIS_LIBRARIES optimized ${_EXTENSIONS_LIB} debug ${_EXTENSIONS_LIB}d)
if (AMDIS_NEED_BASE_PROBLEMS)
list(APPEND AMDIS_INCLUDE_DIRS ${AMDIS_INCLUDE_DIR}/extensions/base_problems)
endif (AMDIS_NEED_BASE_PROBLEMS)
else ()
message(FATAL_ERROR "Extensions library not found")
endif ()
unset(_EXTENSIONS_LIB CACHE)
endif (AMDIS_NEED_EXTENSIONS)
# reinit library
# --------------
if (AMDIS_NEED_REINIT)
find_library(_REINIT_LIB amdisreinit${POSTFIX} PATHS ${AMDIS_DIR}/../../lib/amdis/)
if (_REINIT_LIB)
list(APPEND AMDIS_INCLUDE_DIRS ${AMDIS_INCLUDE_DIR}/reinit)
list(APPEND AMDIS_LIBRARIES optimized ${_REINIT_LIB} debug ${_REINIT_LIB}d)
else ()
message(FATAL_ERROR "Reinit library not found")
endif ()
unset(_REINIT_LIB CACHE)
endif (AMDIS_NEED_REINIT)
# compositeFEM library
# --------------------
if (AMDIS_NEED_COMPOSITE_FEM)
find_library(_COMPOSITE_FEM_LIB amdiscompositefem${POSTFIX} PATHS ${AMDIS_DIR}/../../lib/amdis/)
if (_COMPOSITE_FEM_LIB)
list(APPEND AMDIS_INCLUDE_DIRS ${AMDIS_INCLUDE_DIR}/compositeFEM)
list(APPEND AMDIS_LIBRARIES optimized ${_COMPOSITE_FEM_LIB} debug ${_COMPOSITE_FEM_LIB}d)
else ()
message(FATAL_ERROR "CompositeFEM library not found")
endif ()
unset(_COMPOSITE_FEM_LIB CACHE)
endif (AMDIS_NEED_COMPOSITE_FEM)
# muparser library
# --------------------
find_library(_MUPARSER_LIB muparser PATHS ${AMDIS_DIR}/../../lib/amdis/)
if (_MUPARSER_LIB)
list(APPEND AMDIS_INCLUDE_DIRS ${AMDIS_INCLUDE_DIR}/muparser)
list(APPEND AMDIS_LIBRARIES ${_MUPARSER_LIB})
else ()
message(ERROR "MuParser library not found")
endif ()
unset(_MUPARSER_LIB CACHE)
# Additional libraries
# ==================================================================================================
if (AMDIS_HAS_PARALLEL_DOMAIN)
enable_mpi(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
enable_petsc(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
list(APPEND AMDIS_COMPILEFLAGS "-DHAVE_PARALLEL_DOMAIN_AMDIS=1")
endif (AMDIS_HAS_PARALLEL_DOMAIN)
# Zoltan library
# --------------
if (AMDIS_NEED_ZOLTAN)
enable_zoltan(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
endif ()
# BDDCML library
# --------------
if (AMDIS_NEED_BDDCML)
enable_bddcml(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
endif ()
# Hypre library
# --------------
if (AMDIS_NEED_HYPRE)
enable_hypre(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
endif ()
# PNG library
# --------------
if (AMDIS_NEED_PNG)
enable_png(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
endif ()
# Sequential PETSc library
# --------------
if (AMDIS_NEED_SEQ_PETSC AND NOT AMDIS_HAS_PARALLEL_DOMAIN)
enable_mpi(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
enable_petsc(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
list(APPEND COMPILEFLAGS "-DHAVE_SEQ_PETSC=1")
endif ()
AMDiS/cmake/AMDISConfig.cmake.in 0 → 100644
View file @ 8272e4a7
# This configuration file is shipped with the FEM-Toolbox AMDiS.
# It simplifies the configure of different amdis-versions.
#
# We set the following variables:
# AMDIS_INCLUDE_DIRS all include directories (mtl, umfpack, parmetis, metis, ...)
# AMDIS_LIBRARIES the needed libraries
# AMDiS_COMPILEFLAGS some compile flags for amdis
#
# Use this package in the following way:
#
# find_package(AMDiS REQUIRED [PARALLEL|SEQUENTIAL])
# add_executable(yourTarget <yourSources>)
# include_directories(${AMDIS_INCLUDE_DIRS})
# compile_definitions(${AMDIS_COMPILEFLAGS})
# target_link_libraries(yourTarget ${AMDIS_LIBRARIES})
#
# The default component for this package is SEQUENTIAL.
#
if (${CMAKE_VERSION} VERSION_LESS "2.8.10")
message(FATAL_ERROR "The Configuration file was created for CMake version >= 2.8.10")
endif ()
list(APPEND CMAKE_MODULE_PATH ${AMDIS_DIR})
set(IS_AMDISCONFIG true)
set(AMDIS_USE_FILE ${AMDIS_DIR}/AMDISUse.cmake)
# Include macros
include(enable_cxx11)
include(enable_mtl4)
include(enable_boost)
include(enable_umfpack)
include(enable_petsc)
include(enable_zoltan)
include(enable_bddcml)
include(enable_hypre)
include(enable_png)
# enable components
# -----------------
if (AMDIS_FIND_REQUIRED_PARALLEL AND AMDIS_FIND_REQUIRED_SEQUENTIAL)
message(WARNING "Choose either SEQUENTIAL or PARALLEL as component, not both! Falling back to the default SEQUENTIAL.")
set(AMDIS_FIND_REQUIRED_PARALLEL OFF)
endif ()
set(AMDIS_CONFIGURATION "")
# parallel of sequential version
if (AMDIS_FIND_REQUIRED_PARALLEL)
set(AMDIS_HAS_PARALLEL_DOMAIN ON)
set(POSTFIX "-p")
list(APPEND AMDIS_CONFIGURATION "PARALLEL")
else ()
set(AMDIS_HAS_PARALLEL_DOMAIN OFF)
set(POSTFIX "-s")
list(APPEND AMDIS_CONFIGURATION "SEQUENTIAL")
endif ()
if (MSVC)
add_definitions(-DNOMINMAX -D_CONSOLE -DSTRICT -D_SCL_SECURE_NO_WARNINGS -D_CRT_SECURE_NO_WARNINGS)
endif (MSVC)
if (NOT EXISTS ${AMDIS_DIR}/AMDIS${POSTFIX}.cmake)
message(FATAL_ERROR "Configuration ${AMDIS_CONFIGURATION} can not be found in ${AMDIS_DIR}.")
endif ()
# include component configuration
include(AMDIS${POSTFIX})
AMDiS/cmake/AMDISUse.cmake 0 → 100644
View file @ 8272e4a7
# globally add compile options and include directories
add_definitions(${AMDIS_COMPILEFLAGS})
include_directories(${AMDIS_INCLUDE_DIRS})
AMDiS/cmake/CMakeLists.txt 0 → 100644
View file @ 8272e4a7
cmake_minimum_required(VERSION 2.8.10 FATAL_ERROR)
if(POLICY CMP0048)
cmake_policy(SET CMP0048 OLD)
endif()
project(AMDiS)
# set some policies
cmake_policy(SET CMP0017 OLD)
if(POLICY CMP0042)
cmake_policy(SET CMP0042 NEW)
endif()
if(POLICY CMP0054)
cmake_policy(SET CMP0054 NEW)
endif()
list(APPEND CMAKE_MODULE_PATH ${BASE_DIR}/cmake)
# Include macros
include(enable_cxx11)
include(enable_mtl4)
include(enable_boost)
include(enable_umfpack)
include(enable_petsc)
include(enable_zoltan)
include(enable_bddcml)
include(enable_hypre)
include(enable_png)
# ------------------------------------------------------------------------------
include_directories(${SOURCE_DIR})
set(AMDIS_INCLUDE_DIRS "")
set(COMPILEFLAGS "")
enable_cxx11(ENABLE_CXX11 COMPILEFLAGS)
if (ENABLE_CXX11)
list(APPEND COMPILEFLAGS "-DAMDIS_HAS_CXX11=1")
else ()
list(APPEND COMPILEFLAGS "-DAMDIS_HAS_CXX11=0")
endif (ENABLE_CXX11)
enable_mtl4(COMPILEFLAGS AMDIS_INCLUDE_DIRS _)
enable_boost(COMPILEFLAGS AMDIS_INCLUDE_DIRS _)
if (ENABLE_UMFPACK)
enable_umfpack(COMPILEFLAGS AMDIS_INCLUDE_DIRS _)
endif (ENABLE_UMFPACK)
if (ENABLE_PNG)
enable_png(COMPILEFLAGS AMDIS_INCLUDE_DIRS _)
endif (ENABLE_PNG)
# ------------------------------------------------------------------------------
set(AMDIS_SRC "")
list(APPEND AMDIS_SRC
${SOURCE_DIR}/AdaptBase.cc
${SOURCE_DIR}/AdaptInfo.cc
${SOURCE_DIR}/AdaptInstationary.cc
${SOURCE_DIR}/AdaptStationary.cc
${SOURCE_DIR}/AMDiS.cc
${SOURCE_DIR}/Assembler.cc
${SOURCE_DIR}/BasisFunction.cc
${SOURCE_DIR}/Boundary.cc
${SOURCE_DIR}/BoundaryManager.cc
${SOURCE_DIR}/BoundaryObject.cc
${SOURCE_DIR}/Bubble.cc
${SOURCE_DIR}/Cholesky.cc
${SOURCE_DIR}/CoarseningManager.cc
${SOURCE_DIR}/CoarseningManager1d.cc
${SOURCE_DIR}/CoarseningManager2d.cc
${SOURCE_DIR}/CoarseningManager3d.cc
${SOURCE_DIR}/ComponentTraverseInfo.cc
${SOURCE_DIR}/CouplingIterationInterface.cc
${SOURCE_DIR}/CreatorMap.cc
${SOURCE_DIR}/DOFAdmin.cc
${SOURCE_DIR}/DOFIndexed.cc
${SOURCE_DIR}/DOFMatrix.cc
${SOURCE_DIR}/DOFVector.cc
${SOURCE_DIR}/DirichletBC.cc
${SOURCE_DIR}/DualTraverse.cc
${SOURCE_DIR}/ElInfo.cc
${SOURCE_DIR}/ElInfo1d.cc
${SOURCE_DIR}/ElInfo2d.cc
${SOURCE_DIR}/ElInfo3d.cc
${SOURCE_DIR}/ElInfoStack.cc
${SOURCE_DIR}/Element.cc
${SOURCE_DIR}/ElementData.cc
${SOURCE_DIR}/ElementDofIterator.cc
${SOURCE_DIR}/ElementRegion_ED.cc
${SOURCE_DIR}/FiniteElemSpace.cc
${SOURCE_DIR}/FirstOrderAssembler.cc
${SOURCE_DIR}/FirstOrderTerm.cc
${SOURCE_DIR}/FixVec.cc
${SOURCE_DIR}/Global.cc
${SOURCE_DIR}/Initfile.cc
${SOURCE_DIR}/Lagrange.cc
${SOURCE_DIR}/LeafData.cc
${SOURCE_DIR}/Line.cc
${SOURCE_DIR}/MacroElement.cc
${SOURCE_DIR}/Marker.cc
${SOURCE_DIR}/MatrixVector.cc
${SOURCE_DIR}/Mesh.cc
${SOURCE_DIR}/MeshStructure.cc
${SOURCE_DIR}/Operator.cc
${SOURCE_DIR}/OperatorTerm.cc
${SOURCE_DIR}/Parametric.cc
${SOURCE_DIR}/PeriodicBC.cc
${SOURCE_DIR}/ProblemInstat.cc
${SOURCE_DIR}/ProblemInterpol.cc
${SOURCE_DIR}/ProblemStat.cc
${SOURCE_DIR}/Projection.cc
${SOURCE_DIR}/QPInfo.cc
${SOURCE_DIR}/QPsiPhi.cc
${SOURCE_DIR}/Quadrature.cc
${SOURCE_DIR}/RCNeighbourList.cc
${SOURCE_DIR}/Recovery.cc
${SOURCE_DIR}/RefinementManager.cc
${SOURCE_DIR}/RefinementManager1d.cc
${SOURCE_DIR}/RefinementManager2d.cc
${SOURCE_DIR}/RefinementManager3d.cc
${SOURCE_DIR}/RobinBC.cc
${SOURCE_DIR}/ScalableQuadrature.cc
${SOURCE_DIR}/SecondOrderAssembler.cc
${SOURCE_DIR}/SecondOrderTerm.cc
${SOURCE_DIR}/Serializer.cc
${SOURCE_DIR}/StandardProblemIteration.cc
${SOURCE_DIR}/SubAssembler.cc
${SOURCE_DIR}/SubElInfo.cc
${SOURCE_DIR}/SubQuadrature.cc
${SOURCE_DIR}/SurfaceQuadrature.cc
${SOURCE_DIR}/SurfaceRegion_ED.cc
${SOURCE_DIR}/SystemVector.cc
${SOURCE_DIR}/Tetrahedron.cc
${SOURCE_DIR}/Timer.cc
${SOURCE_DIR}/Traverse.cc
${SOURCE_DIR}/Triangle.cc
${SOURCE_DIR}/VertexVector.cc
${SOURCE_DIR}/ZeroOrderAssembler.cc
${SOURCE_DIR}/ZeroOrderTerm.cc
${SOURCE_DIR}/est/Estimator.cc
${SOURCE_DIR}/est/RecoveryEstimator.cc
${SOURCE_DIR}/est/ResidualEstimator.cc
${SOURCE_DIR}/est/SimpleResidualEstimator.cc
${SOURCE_DIR}/io/ArhReader.cc
${SOURCE_DIR}/io/detail/ArhReader.cc
${SOURCE_DIR}/io/Arh2Reader.cc
${SOURCE_DIR}/io/Arh2Writer.cc
${SOURCE_DIR}/io/Arh3Reader.cc
${SOURCE_DIR}/io/Arh3Writer.cc
${SOURCE_DIR}/io/detail/Arh2Reader.cc
${SOURCE_DIR}/io/detail/ArhWriter.cc
${SOURCE_DIR}/io/detail/Arh2Writer.cc
${SOURCE_DIR}/io/detail/Arh3Reader.cc
${SOURCE_DIR}/io/detail/Arh3Writer.cc
${SOURCE_DIR}/io/DofWriter.cc
${SOURCE_DIR}/io/ElementFileWriter.cc
${SOURCE_DIR}/io/FileWriterInterface.cc
${SOURCE_DIR}/io/FileWriter.cc
${SOURCE_DIR}/io/GNUPlotWriter.cc
${SOURCE_DIR}/io/MacroInfo.cc
${SOURCE_DIR}/io/MacroReader.cc
${SOURCE_DIR}/io/MacroWriter.cc
${SOURCE_DIR}/io/PngReader.cc
${SOURCE_DIR}/io/PngWriter.cc
${SOURCE_DIR}/io/PovrayWriter.cc
${SOURCE_DIR}/io/Spreadsheet.cc
${SOURCE_DIR}/io/ValueReader.cc
${SOURCE_DIR}/io/ValueWriter.cc
${SOURCE_DIR}/io/VtkWriter.cc
${SOURCE_DIR}/io/VtkVectorWriter.cc
${SOURCE_DIR}/io/detail/VtkWriter.cc
${SOURCE_DIR}/nonlin/ProblemNonLin.cc
${SOURCE_DIR}/solver/SolverMatrix.cc
${SOURCE_DIR}/time/RosenbrockAdaptInstationary.cc
${SOURCE_DIR}/time/RosenbrockMethod.cc
${SOURCE_DIR}/time/RosenbrockStationary.cc
# debugging files
${SOURCE_DIR}/Debug.cc
${SOURCE_DIR}/GlobalDOFNumbering.cc # not used by any other class
${SOURCE_DIR}/GlobalElementNumbering.cc # not used by any other class
${SOURCE_DIR}/ProblemStatDbg.cc
)
if (ENABLE_MPI)
enable_mpi(COMPILEFLAGS AMDIS_INCLUDE_DIRS _)
list(APPEND COMPILEFLAGS "-DHAVE_MPI=1")
endif (ENABLE_MPI)
include(amdis_parallel)
include(muparser)
# ------------------------------------------------------------------------------
if (ENABLE_COMPRESSION)
list(APPEND COMPILEFLAGS "-DAMDIS_HAS_COMPRESSION")
endif (ENABLE_COMPRESSION)
if (ENABLE_EXTENSIONS)
include(amdis_extensions)
add_library(amdis_extensions ${EXTENSIONS_SRC})
set_target_properties(amdis_extensions PROPERTIES OUTPUT_NAME amdisextensions${POSTFIX}
DEBUG_OUTPUT_NAME amdisextensions${POSTFIX}d)
install(TARGETS amdis_extensions DESTINATION lib/amdis/ )
endif (ENABLE_EXTENSIONS)
if (ENABLE_REINIT)
include(amdis_reinit)
add_library(amdis_reinit ${REINIT_SRC})
set_target_properties(amdis_reinit PROPERTIES OUTPUT_NAME amdisreinit${POSTFIX}
DEBUG_OUTPUT_NAME amdisreinit${POSTFIX}d)
install(TARGETS amdis_reinit DESTINATION lib/amdis/ )
endif (ENABLE_REINIT)
if (ENABLE_COMPOSITE_FEM)
include(amdis_compositeFEM)
add_library(amdis_compositeFEM ${COMPOSITE_FEM_SRC})
set_target_properties(amdis_compositeFEM PROPERTIES OUTPUT_NAME amdiscompositefem${POSTFIX}
DEBUG_OUTPUT_NAME amdiscompositefem${POSTFIX}d)
install(TARGETS amdis_compositeFEM DESTINATION lib/amdis/ )
endif (ENABLE_COMPOSITE_FEM)
if (ENABLE_SEQ_PETSC)
include(amdis_seq_petsc)
endif (ENABLE_SEQ_PETSC)
# ------------------------------------------------------------------------------
include_directories(${AMDIS_INCLUDE_DIRS})
add_definitions(${COMPILEFLAGS})
add_library(amdis ${AMDIS_SRC} ${PARALLEL_DOMAIN_AMDIS_SRC})
# specify how to install this target:
# -----------------------------------
set(INSTALL_SUBDIRS . config nonlin est expressions operations traits
utility time solver solver/details solver/itl io io/detail)
foreach (SUBDIR ${INSTALL_SUBDIRS})
file(GLOB HEADERS "${SOURCE_DIR}/${SUBDIR}/*.h*")
install(FILES ${HEADERS} DESTINATION include/amdis/${SUBDIR}/)
endforeach ()
file(GLOB CMAKE_MACROS "${BASE_DIR}/cmake/enable_*.cmake")
install(FILES ${CMAKE_MACROS} DESTINATION share/amdis/)
install(FILES ${BASE_DIR}/cmake3/parse_zoltan_makefile.cmake DESTINATION share/amdis/)
install(DIRECTORY ${BASE_DIR}/lib/mtl4/ DESTINATION include/amdis/mtl4/
FILES_MATCHING PATTERN "*.hpp"
PATTERN ".svn" EXCLUDE
PATTERN ".svn/*" EXCLUDE
PATTERN "mtl4/libs" EXCLUDE
PATTERN "mtl4/extern" EXCLUDE)
set_target_properties(amdis PROPERTIES OUTPUT_NAME amdis${POSTFIX}
DEBUG_OUTPUT_NAME amdis${POSTFIX}d)
install(TARGETS amdis DESTINATION lib/amdis/ )
# generate configuration file:
# ----------------------------
# global configuration
configure_file(${BASE_DIR}/cmake/AMDISConfig.cmake.in
${AMDiS_BINARY_DIR}/AMDISConfig.cmake
@ONLY
)
# component configuration
configure_file(${BASE_DIR}/cmake/AMDIS.cmake.in
${AMDiS_BINARY_DIR}/AMDIS${POSTFIX}.cmake
@ONLY
)
install(FILES ${AMDiS_BINARY_DIR}/AMDISConfig.cmake DESTINATION share/amdis/)
install(FILES ${AMDiS_BINARY_DIR}/AMDIS${POSTFIX}.cmake DESTINATION share/amdis/)
install(FILES ${BASE_DIR}/cmake3/AMDISUse.cmake DESTINATION share/amdis/)