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.gitignore 0 → 100644
View file @ 8272e4a7
# ignore generated .vtu and .pvd files,
*.vtu
*.pvd
*.pvtu
*.vtk
# ignore ARH files
*.arh
*.parh
*.tarh
*.kate-swp
*.tmp
# ignore build directories
build*/
install*/
output*/
# ignore CMake files
CMakeCache.txt
CMakeFiles
CMakeScripts
Testing
Makefile
cmake_install.cmake
install_manifest.txt
compile_commands.json
CTestTestfile.cmake
.gitlab-ci.yml 0 → 100644
View file @ 8272e4a7
---
image: mathiwr/amdis-base:debian9
stages:
- build
- demo
- test
# compile amdis
build:9-debug-gcc:
stage: build
script:
- tools/build_amdis.sh --stage build --config Debug
artifacts:
paths:
- install/
name: "$CI_BUILD_NAME"
expire_in: 6 hrs
build:9-release-gcc:
stage: build
script:
- tools/build_amdis.sh --stage build --config Release
artifacts:
paths:
- install/
name: "$CI_BUILD_NAME"
expire_in: 6 hrs
build:9-parallel-debug-gcc:
stage: build
script:
- tools/build_amdis.sh --stage build --config Debug --parallel
artifacts:
paths:
- install/
name: "$CI_BUILD_NAME"
expire_in: 6 hrs
build:9-parallel-release-gcc:
stage: build
script:
- tools/build_amdis.sh --stage build --config Release --parallel
artifacts:
paths:
- install/
name: "$CI_BUILD_NAME"
expire_in: 6 hrs
# compile the demos
demo:9-debug-gcc:
stage: demo
script:
- tools/build_amdis.sh --stage demo --config Debug
dependencies:
- build:9-debug-gcc
demo:9-release-gcc:
stage: demo
script:
- tools/build_amdis.sh --stage demo --config Release
dependencies:
- build:9-release-gcc
demo:9-parallel-debug-gcc:
stage: demo
script:
- tools/build_amdis.sh --stage demo --config Debug --parallel
dependencies:
- build:9-parallel-debug-gcc
demo:9-parallel-release-gcc:
stage: demo
script:
- tools/build_amdis.sh --stage demo --config Release --parallel
dependencies:
- build:9-parallel-release-gcc
# compiel and run the tests
test:9-debug-gcc:
stage: test
script:
- tools/build_amdis.sh --stage test --config Debug
dependencies:
- build:9-debug-gcc
test:9-release-gcc:
stage: test
script:
- tools/build_amdis.sh --stage test --config Release
dependencies:
- build:9-release-gcc
test:9-parallel-debug-gcc:
stage: test
script:
- tools/build_amdis.sh --stage test --config Debug --parallel
dependencies:
- build:9-parallel-debug-gcc
test:9-parallel-release-gcc:
stage: test
script:
- tools/build_amdis.sh --stage test --config Release --parallel
dependencies:
- build:9-parallel-release-gcc
AMDiS/AUTHORS deleted 100644 → 0
View file @ 499f2ad3
AMDiS/CMakeLists.txt
View file @ 8272e4a7
set(CMAKE_LEGACY_CYGWIN_WIN32 0)
cmake_minimum_required(VERSION 2.8.12 FATAL_ERROR)
project(AMDiS)
cmake_minimum_required(VERSION 2.6)
#needs: --enable-debug, enable-intel --enable-openmp --enable-parmetis --enable-parallel-domain --enable-umfpack --enable-mkl --enable-boost --enable-marmot
#TODO: use the cmake build type
option(ENABLE_DEBUG "debug" false)
#option(ENABLE_INTEL "use intel compiler" false)
option(ENABLE_OPENMP "use openmp" false)
option(ENABLE_PARMETIS "use partion of unity and enable parmetis" false)
option(ENABLE_PARALLEL_DOMAIN "use parallel domain decomposition" false)
SET(PETSC_DIR "" CACHE STRING "Petsc directory for parallel domain decomposition" )
SET(PETSC_ARCH "" CACHE STRING "Petsc architecture")
option(ENABLE_UMFPACK "use umfpack solver" false)
option(ENABLE_MKL "use the mkl" false)
SET(MKL_DIR "" CACHE STRING "MKL directory")
option(ENABLE_DUNE "use dune" false)
SET(DUNE_DIR "" CACHE STRING "Dune directory")
#option(ENABLE_BOOST "use the boost library" false)
option(ENABLE_MARMOT "use marmot" false)
option(ENABLE_GUI "compile the gui" false)
#option(ENABLE_TESTS "compile the tests" false)
SET(ENABLE_TESTS false)
if(ENABLE_INTEL)
Message("please set the icc manually")
INCLUDE (CMakeForceCompiler)
CMAKE_FORCE_C_COMPILER(icc "intel C compiler")
CMAKE_FORCE_CXX_COMPILER(icpc "intel C++ compiler")
#SET(CMAKE_C_COMPILER "icc")
endif(ENABLE_INTEL)
#if(ENABLE_BOOST)
SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_BOOST=1")
find_package(Boost 1.42 REQUIRED)
#endif(ENABLE_BOOST)
SET(LIB_DIR ./lib)
SET(SOURCE_DIR ./src)
SET(AMDIS_SRC ${SOURCE_DIR}/DOFIndexed.cc
${SOURCE_DIR}/GNUPlotWriter.cc
${SOURCE_DIR}/VertexVector.cc
${SOURCE_DIR}/PeriodicBC.cc
${SOURCE_DIR}/Recovery.cc
${SOURCE_DIR}/RecoveryEstimator.cc
${SOURCE_DIR}/ResidualEstimator.cc
${SOURCE_DIR}/Cholesky.cc
${SOURCE_DIR}/AdaptBase.cc
${SOURCE_DIR}/StandardProblemIteration.cc
${SOURCE_DIR}/ProblemScal.cc
${SOURCE_DIR}/ProblemVec.cc
${SOURCE_DIR}/ProblemImplicit.cc
${SOURCE_DIR}/ProblemVecDbg.cc
${SOURCE_DIR}/DualTraverse.cc
${SOURCE_DIR}/ElementData.cc
${SOURCE_DIR}/ComponentTraverseInfo.cc
${SOURCE_DIR}/CreatorMap.cc
${SOURCE_DIR}/ProblemInterpolScal.cc
${SOURCE_DIR}/ProblemInterpolVec.cc
${SOURCE_DIR}/MacroReader.cc
${SOURCE_DIR}/ValueReader.cc
${SOURCE_DIR}/Projection.cc
${SOURCE_DIR}/SubAssembler.cc
${SOURCE_DIR}/ZeroOrderAssembler.cc
${SOURCE_DIR}/FirstOrderAssembler.cc
${SOURCE_DIR}/SecondOrderAssembler.cc
${SOURCE_DIR}/Assembler.cc
${SOURCE_DIR}/AdaptInfo.cc
${SOURCE_DIR}/Marker.cc
${SOURCE_DIR}/SurfaceQuadrature.cc
${SOURCE_DIR}/LeafData.cc
${SOURCE_DIR}/BoundaryManager.cc
${SOURCE_DIR}/DirichletBC.cc
${SOURCE_DIR}/RobinBC.cc
${SOURCE_DIR}/FileWriter.cc
${SOURCE_DIR}/ElementFileWriter.cc
${SOURCE_DIR}/ElInfo.cc
${SOURCE_DIR}/ElInfoStack.cc
${SOURCE_DIR}/OperatorTerm.cc
${SOURCE_DIR}/ZeroOrderTerm.cc
${SOURCE_DIR}/FirstOrderTerm.cc
${SOURCE_DIR}/SecondOrderTerm.cc
${SOURCE_DIR}/Operator.cc
${SOURCE_DIR}/Mesh.cc
${SOURCE_DIR}/MeshStructure.cc
${SOURCE_DIR}/AdaptStationary.cc
${SOURCE_DIR}/AdaptInstationary.cc
${SOURCE_DIR}/DOFVector.cc
${SOURCE_DIR}/Estimator.cc
${SOURCE_DIR}/ProblemInstat.cc
${SOURCE_DIR}/ProblemNonLin.cc
${SOURCE_DIR}/NonLinUpdater.cc
${SOURCE_DIR}/QPsiPhi.cc
${SOURCE_DIR}/BasisFunction.cc
${SOURCE_DIR}/Boundary.cc
${SOURCE_DIR}/CoarseningManager.cc
${SOURCE_DIR}/CoarseningManager1d.cc
${SOURCE_DIR}/CoarseningManager2d.cc
${SOURCE_DIR}/CoarseningManager3d.cc
${SOURCE_DIR}/DOFAdmin.cc
${SOURCE_DIR}/DOFMatrix.cc
${SOURCE_DIR}/Element.cc
${SOURCE_DIR}/ElInfo1d.cc
${SOURCE_DIR}/ElInfo2d.cc
${SOURCE_DIR}/ElInfo3d.cc
${SOURCE_DIR}/FiniteElemSpace.cc
${SOURCE_DIR}/FixVec.cc
${SOURCE_DIR}/Global.cc
${SOURCE_DIR}/Lagrange.cc
${SOURCE_DIR}/Line.cc
${SOURCE_DIR}/MacroElement.cc
${SOURCE_DIR}/MacroWriter.cc
${SOURCE_DIR}/Parameters.cc
${SOURCE_DIR}/Parametric.cc
${SOURCE_DIR}/Quadrature.cc
${SOURCE_DIR}/RCNeighbourList.cc
${SOURCE_DIR}/RefinementManager.cc
${SOURCE_DIR}/RefinementManager1d.cc
${SOURCE_DIR}/RefinementManager2d.cc
${SOURCE_DIR}/RefinementManager3d.cc
${SOURCE_DIR}/Tetrahedron.cc
${SOURCE_DIR}/Traverse.cc
${SOURCE_DIR}/TraverseParallel.cc
${SOURCE_DIR}/Triangle.cc
${SOURCE_DIR}/TecPlotWriter.cc
${SOURCE_DIR}/ValueWriter.cc
${SOURCE_DIR}/VtkWriter.cc
${SOURCE_DIR}/PngWriter.cc
${SOURCE_DIR}/PovrayWriter.cc
${SOURCE_DIR}/DataCollector.cc
${SOURCE_DIR}/ScalableQuadrature.cc
${SOURCE_DIR}/SubElInfo.cc
${SOURCE_DIR}/parallel/InteriorBoundary.cc
${SOURCE_DIR}/ElementDofIterator.cc
${SOURCE_DIR}/Debug.cc
${SOURCE_DIR}/time/RosenbrockAdaptInstationary.cc
${SOURCE_DIR}/time/RosenbrockStationary.cc
${SOURCE_DIR}/time/RosenbrockMethod.cc
)
if(ENABLE_PARMETIS)
find_package(MPI REQUIRED)
INCLUDE (CMakeForceCompiler)
CMAKE_FORCE_C_COMPILER(mpicc "MPI C compiler")
CMAKE_FORCE_CXX_COMPILER(mpiCC "MPI C++ compiler")
include_directories( ${LIB_DIR}/ParMetis-3.1)
SET(PARALLEL_AMDIS_SRC ${SOURCE_DIR}/ConditionalEstimator.cc ${SOURCE_DIR}/ConditionalMarker.cc
${SOURCE_DIR}/ParallelProblem.cc ${SOURCE_DIR}/ParMetisPartitioner.cc
${SOURCE_DIR}/PollutionError.cc)
SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_PARALLEL_AMDIS=1")
endif(ENABLE_PARMETIS)
if(ENABLE_PARALLEL_DOMAIN)
include_directories(${PETSC_DIR}/include ${PETSC_DIR}/${PETSC_ARCH}/include)
SET(PARALLEL_DOMAIN_AMDIS_SRC
${SOURCE_DIR}/parallel/ParallelDomainBase.cc
${SOURCE_DIR}/parallel/StdMpi.cc
${SOURCE_DIR}/parallel/ParallelDomainDbg.cc
${SOURCE_DIR}/parallel/GlobalMatrixSolver.cc
${SOURCE_DIR}/parallel/MpiHelper.cc)
SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_PARALLEL_DOMAIN_AMDIS=1")
endif(ENABLE_PARALLEL_DOMAIN)
if(ENABLE_DEBUG)
SET(COMPILEFLAGS "${COMPILEFLAGS} -g -O0 -DDEBUG=1")
endif(ENABLE_DEBUG)
if(ENABLE_OPENMP)
if(ENABLE_INTEL)
SET(COMPILEFLAGS "${COMPILEFLAGS} -openmp")
else(ENABLE_INTEL)
SET(COMPILEFLAGS "${COMPILEFLAGS} -fopenmp")
endif(ENABLE_INTEL)
endif(ENABLE_OPENMP)
if(ENABLE_UMFPACK)
include_directories(${LIB_DIR}/UFconfig ${LIB_DIR}/AMD/Include ${LIB_DIR}/UMFPACK/Include)
SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_UMFPACK=1 -DMTL_HAS_UMFPACK")
endif(ENABLE_UMFPACK)
if(ENABLE_MKL)
include_directories(${MKL_DIR})
SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_MKL=1")
endif(ENABLE_MKL)
if(ENABLE_DUNE)
include_directories(${DUNE_DIR})
SET(COMPILEFLAGS "${COMPILEFLAGS} -DHAVE_DUNE=1")
endif(ENABLE_DUNE)
SET(COMPOSITE_SOURCE_DIR compositeFEM/src)
SET(COMPOSITE_FEM_SRC ${COMPOSITE_SOURCE_DIR}/CFE_Integration.cc ${COMPOSITE_SOURCE_DIR}/CFE_NormAndErrorFcts.cc
${COMPOSITE_SOURCE_DIR}/CompositeFEMMethods.cc ${COMPOSITE_SOURCE_DIR}/LevelSetAdaptMesh.cc
${COMPOSITE_SOURCE_DIR}/PenaltyOperator.cc ${COMPOSITE_SOURCE_DIR}/ElementLevelSet.cc
${COMPOSITE_SOURCE_DIR}/CompositeFEMOperator.cc ${COMPOSITE_SOURCE_DIR}/SubPolytope.cc
${COMPOSITE_SOURCE_DIR}/SubElementAssembler.cc )
#mtl4 includes
include_directories(${LIB_DIR}/mtl4)
include_directories(${SOURCE_DIR})
add_library(amdis SHARED ${AMDIS_SRC} ${PARALLEL_AMDIS_SRC} ${PARALLEL_DOMAIN_AMDIS_SRC})
add_library(compositeFEM SHARED ${COMPOSITE_FEM_SRC})
SET_TARGET_PROPERTIES(amdis PROPERTIES COMPILE_FLAGS "${COMPILEFLAGS}")
if(ENABLE_MARMOT)
Message("please set marmotcc manually")
endif(ENABLE_MARMOT)
install(TARGETS amdis compositeFEM
LIBRARY DESTINATION lib )
if(ENABLE_GUI)
add_subdirectory(other/tools/amdis_gui)
endif(ENABLE_GUI)
if(ENABLE_TESTS)
#ENABLE_TESTING()
#add_test(demo_test run_test.sh)
#add_test(demo_test ${CMAKE_CTEST_COMMAND} --build-and-test "${CMAKE_SOURCE_DIR}/test/demo_test" "${CMAKE_BINARY_DIR}/test/demo_test" --build-generator "${CMAKE_GENERATOR}" --build-makeprogram "${CMAKE_MAKE_PROGRAM}" "${CMAKE_BINARY_DIR}/test/demo_test")
endif(ENABLE_TESTS)
set(AMDiS_VERSION "1.2.0")
set(BASE_DIR ${AMDiS_SOURCE_DIR})
set(SOURCE_DIR ${BASE_DIR}/src)
if (NOT CMAKE_BUILD_TYPE)
set(CMAKE_BUILD_TYPE RelWithDebInfo CACHE STRING
"Choose the type of build, options are: None Debug Release [RelWithDebInfo] MinSizeRel."
FORCE)
endif ()
# ------------------------------------------------------------------------------
# some options to control the build process
option(ENABLE_PARALLEL_DOMAIN "Use parallel domain decomposition" false)
option(ENABLE_MPI "Compile with MPI compiler and library" false)
option(ENABLE_UMFPACK "Enable support for the UMFPACK solver" true)
option(ENABLE_EXTENSIONS "Use extensions for AMDiS" false)
option(ENABLE_HYPRE "Use HYPRE AMG solver" false)
option(ENABLE_PNG "Use png reader/writer" false)
include(CMakeDependentOption)
# additional options for parallel_domain
# {
cmake_dependent_option(ENABLE_ZOLTAN
"Add support for the Parallel Partitioning suite Zoltan" false
"ENABLE_PARALLEL_DOMAIN" false)
cmake_dependent_option(ENABLE_PARALLEL_SOLVERS
"Add some problem dependent solver, e.g. Feti, Navier-Stokes and Cahn-Hilliard" true
"ENABLE_PARALLEL_DOMAIN" false)
cmake_dependent_option(ENABLE_BDDCML
"Add support for the BDDCML library" false
"ENABLE_PARALLEL_DOMAIN" false)
# }
# enable/disable some more features
option(ENABLE_COMPRESSION "Use output compression for vtu and arh files" true)
mark_as_advanced(ENABLE_COMPRESSION)
option(ENABLE_REINIT "Compile reinit library" true)
mark_as_advanced(ENABLE_REINIT)
option(ENABLE_COMPOSITE_FEM "Compile compositeFEM library" true)
mark_as_advanced(ENABLE_COMPOSITE_FEM)
option(ENABLE_OPENMP "Compile with OpenMP flags. (Experimental)" false)
mark_as_advanced(ENABLE_OPENMP)
option(ENABLE_SEQ_PETSC "Use sequential PETSc solvers" false)
mark_as_advanced(ENABLE_SEQ_PETSC)
option(BUILD_SHARED_LIBS "Build all libraries as shared or static, default: shared" true)
mark_as_advanced(BUILD_SHARED_LIBS)
if (MSVC)
set(BUILD_SHARED_LIBS false)
mark_as_advanced(BUILD_SHARED_LIBS)
message(WARNING "Currently we can only build static libraries with Visual Studio")
add_definitions(-DNOMINMAX -D_CONSOLE -DSTRICT -D_SCL_SECURE_NO_WARNINGS -D_CRT_SECURE_NO_WARNINGS)
endif (MSVC)
# parallel of sequential version
if (ENABLE_PARALLEL_DOMAIN)
set(ENABLE_MPI 1 CACHE BOOL "Compile with MPI compiler and library" FORCE)
set(POSTFIX "-p")
else ()
set(POSTFIX "-s")
endif ()
# ------------------------------------------------------------------------------
if (${CMAKE_VERSION} VERSION_LESS "3.2")
# Fallback to classical CMakeLists file
include(${AMDiS_SOURCE_DIR}/cmake/CMakeLists.txt)
else ()
include(${AMDiS_SOURCE_DIR}/cmake3/CMakeLists.txt)
endif ()
# ------------------------------------------------------------------------------
include(CMakePackageConfigHelpers)
write_basic_package_version_file(
${AMDiS_BINARY_DIR}/AMDISConfigVersion.cmake
VERSION ${AMDiS_VERSION}
COMPATIBILITY SameMajorVersion
)
install(FILES ${AMDiS_BINARY_DIR}/AMDISConfigVersion.cmake DESTINATION share/amdis/)
AMDiS/COPYING deleted 100644 → 0
View file @ 499f2ad3
GNU GENERAL PUBLIC LICENSE
Version 2, June 1991
Copyright (C) 1989, 1991 Free Software Foundation, Inc.
59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Everyone is permitted to copy and distribute verbatim copies
of this license document, but changing it is not allowed.
Preamble
The licenses for most software are designed to take away your
freedom to share and change it. By contrast, the GNU General Public
License is intended to guarantee your freedom to share and change free
software--to make sure the software is free for all its users. This
General Public License applies to most of the Free Software
Foundation's software and to any other program whose authors commit to
using it. (Some other Free Software Foundation software is covered by
the GNU Library General Public License instead.) You can apply it to
your programs, too.
When we speak of free software, we are referring to freedom, not
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To protect your rights, we need to make restrictions that forbid
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These restrictions translate to certain responsibilities for you if you
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The precise terms and conditions for copying, distribution and
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TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
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Each version is given a distinguishing version number. If the Program
specifies a version number of this License which applies to it and "any
later version", you have the option of following the terms and conditions
either of that version or of any later version published by the Free
Software Foundation. If the Program does not specify a version number of
this License, you may choose any version ever published by the Free Software
Foundation.
10. If you wish to incorporate parts of the Program into other free
programs whose distribution conditions are different, write to the author
to ask for permission. For software which is copyrighted by the Free
Software Foundation, write to the Free Software Foundation; we sometimes
make exceptions for this. Our decision will be guided by the two goals
of preserving the free status of all derivatives of our free software and
of promoting the sharing and reuse of software generally.
NO WARRANTY
11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY
FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN
OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES
PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED
OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS
TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE
PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING,
REPAIR OR CORRECTION.
12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR
REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,
INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING
OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED
TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY
YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER
PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
POSSIBILITY OF SUCH DAMAGES.
END OF TERMS AND CONDITIONS
How to Apply These Terms to Your New Programs
If you develop a new program, and you want it to be of the greatest
possible use to the public, the best way to achieve this is to make it
free software which everyone can redistribute and change under these terms.
To do so, attach the following notices to the program. It is safest
to attach them to the start of each source file to most effectively
convey the exclusion of warranty; and each file should have at least
the "copyright" line and a pointer to where the full notice is found.
<one line to give the program's name and a brief idea of what it does.>
Copyright (C) 19yy <name of author>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Also add information on how to contact you by electronic and paper mail.
If the program is interactive, make it output a short notice like this
when it starts in an interactive mode:
Gnomovision version 69, Copyright (C) 19yy name of author
Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
This is free software, and you are welcome to redistribute it
under certain conditions; type `show c' for details.
The hypothetical commands `show w' and `show c' should show the appropriate
parts of the General Public License. Of course, the commands you use may
be called something other than `show w' and `show c'; they could even be
mouse-clicks or menu items--whatever suits your program.
You should also get your employer (if you work as a programmer) or your
school, if any, to sign a "copyright disclaimer" for the program, if
necessary. Here is a sample; alter the names:
Yoyodyne, Inc., hereby disclaims all copyright interest in the program
`Gnomovision' (which makes passes at compilers) written by James Hacker.
<signature of Ty Coon>, 1 April 1989
Ty Coon, President of Vice
This General Public License does not permit incorporating your program into
proprietary programs. If your program is a subroutine library, you may
consider it more useful to permit linking proprietary applications with the
library. If this is what you want to do, use the GNU Library General
Public License instead of this License.
AMDiS/ChangeLog deleted 100644 → 0
View file @ 499f2ad3
Rev 1210:
* In ganz AMDiS Variablen- und Funktionsnamen von "FESpace" nach
"FeSpace" geändert. Dies betrifft insbesondere "getFESpace()",
das nun "getFeSpace()" heißt.
* ProblemVec::getRHS() -> ProblemVec::getRhs()
Rev 1231:
* Im Operator-Konstruktor dürfen die Flags MATRIX_OPERATOR und
VECTOR_OPERATOR nicht mehr angegeben werden. Sollten diese gesetzt sein,
so compiliert das Programm noch, aber es wird eine entsprechende
Fehlermeldung ausgegeben und das Programm bricht ab.
AMDiS/INSTALL deleted 100644 → 0
View file @ 499f2ad3
Installation Instructions
*************************
Copyright (C) 1994, 1995, 1996, 1999, 2000, 2001, 2002, 2004, 2005 Free
Software Foundation, Inc.
This file is free documentation; the Free Software Foundation gives
unlimited permission to copy, distribute and modify it.
Basic Installation
==================
These are generic installation instructions.
The `configure' shell script attempts to guess correct values for
various system-dependent variables used during compilation. It uses
those values to create a `Makefile' in each directory of the package.
It may also create one or more `.h' files containing system-dependent
definitions. Finally, it creates a shell script `config.status' that
you can run in the future to recreate the current configuration, and a
file `config.log' containing compiler output (useful mainly for
debugging `configure').
It can also use an optional file (typically called `config.cache'
and enabled with `--cache-file=config.cache' or simply `-C') that saves
the results of its tests to speed up reconfiguring. (Caching is
disabled by default to prevent problems with accidental use of stale
cache files.)
If you need to do unusual things to compile the package, please try
to figure out how `configure' could check whether to do them, and mail
diffs or instructions to the address given in the `README' so they can
be considered for the next release. If you are using the cache, and at
some point `config.cache' contains results you don't want to keep, you
may remove or edit it.
The file `configure.ac' (or `configure.in') is used to create
`configure' by a program called `autoconf'. You only need
`configure.ac' if you want to change it or regenerate `configure' using
a newer version of `autoconf'.
The simplest way to compile this package is:
1. `cd' to the directory containing the package's source code and type
`./configure' to configure the package for your system. If you're
using `csh' on an old version of System V, you might need to type
`sh ./configure' instead to prevent `csh' from trying to execute
`configure' itself.
Running `configure' takes awhile. While running, it prints some
messages telling which features it is checking for.
2. Type `make' to compile the package.
3. Optionally, type `make check' to run any self-tests that come with
the package.
4. Type `make install' to install the programs and any data files and
documentation.
5. You can remove the program binaries and object files from the
source code directory by typing `make clean'. To also remove the
files that `configure' created (so you can compile the package for
a different kind of computer), type `make distclean'. There is
also a `make maintainer-clean' target, but that is intended mainly
for the package's developers. If you use it, you may have to get
all sorts of other programs in order to regenerate files that came
with the distribution.
Compilers and Options
=====================
Some systems require unusual options for compilation or linking that the
`configure' script does not know about. Run `./configure --help' for
details on some of the pertinent environment variables.
You can give `configure' initial values for configuration parameters
by setting variables in the command line or in the environment. Here
is an example:
./configure CC=c89 CFLAGS=-O2 LIBS=-lposix
*Note Defining Variables::, for more details.
Compiling For Multiple Architectures
====================================
You can compile the package for more than one kind of computer at the
same time, by placing the object files for each architecture in their
own directory. To do this, you must use a version of `make' that
supports the `VPATH' variable, such as GNU `make'. `cd' to the
directory where you want the object files and executables to go and run
the `configure' script. `configure' automatically checks for the
source code in the directory that `configure' is in and in `..'.
If you have to use a `make' that does not support the `VPATH'
variable, you have to compile the package for one architecture at a
time in the source code directory. After you have installed the
package for one architecture, use `make distclean' before reconfiguring
for another architecture.
Installation Names
==================
By default, `make install' installs the package's commands under
`/usr/local/bin', include files under `/usr/local/include', etc. You
can specify an installation prefix other than `/usr/local' by giving
`configure' the option `--prefix=PREFIX'.
You can specify separate installation prefixes for
architecture-specific files and architecture-independent files. If you
pass the option `--exec-prefix=PREFIX' to `configure', the package uses
PREFIX as the prefix for installing programs and libraries.
Documentation and other data files still use the regular prefix.
In addition, if you use an unusual directory layout you can give
options like `--bindir=DIR' to specify different values for particular
kinds of files. Run `configure --help' for a list of the directories
you can set and what kinds of files go in them.
If the package supports it, you can cause programs to be installed
with an extra prefix or suffix on their names by giving `configure' the
option `--program-prefix=PREFIX' or `--program-suffix=SUFFIX'.
Optional Features
=================
Some packages pay attention to `--enable-FEATURE' options to
`configure', where FEATURE indicates an optional part of the package.
They may also pay attention to `--with-PACKAGE' options, where PACKAGE
is something like `gnu-as' or `x' (for the X Window System). The
`README' should mention any `--enable-' and `--with-' options that the
package recognizes.
For packages that use the X Window System, `configure' can usually
find the X include and library files automatically, but if it doesn't,
you can use the `configure' options `--x-includes=DIR' and
`--x-libraries=DIR' to specify their locations.
Specifying the System Type
==========================
There may be some features `configure' cannot figure out automatically,
but needs to determine by the type of machine the package will run on.
Usually, assuming the package is built to be run on the _same_
architectures, `configure' can figure that out, but if it prints a
message saying it cannot guess the machine type, give it the
`--build=TYPE' option. TYPE can either be a short name for the system
type, such as `sun4', or a canonical name which has the form:
CPU-COMPANY-SYSTEM
where SYSTEM can have one of these forms:
OS KERNEL-OS
See the file `config.sub' for the possible values of each field. If
`config.sub' isn't included in this package, then this package doesn't
need to know the machine type.
If you are _building_ compiler tools for cross-compiling, you should
use the option `--target=TYPE' to select the type of system they will
produce code for.
If you want to _use_ a cross compiler, that generates code for a
platform different from the build platform, you should specify the
"host" platform (i.e., that on which the generated programs will
eventually be run) with `--host=TYPE'.
Sharing Defaults
================
If you want to set default values for `configure' scripts to share, you
can create a site shell script called `config.site' that gives default
values for variables like `CC', `cache_file', and `prefix'.
`configure' looks for `PREFIX/share/config.site' if it exists, then
`PREFIX/etc/config.site' if it exists. Or, you can set the
`CONFIG_SITE' environment variable to the location of the site script.
A warning: not all `configure' scripts look for a site script.
Defining Variables
==================
Variables not defined in a site shell script can be set in the
environment passed to `configure'. However, some packages may run
configure again during the build, and the customized values of these
variables may be lost. In order to avoid this problem, you should set
them in the `configure' command line, using `VAR=value'. For example:
./configure CC=/usr/local2/bin/gcc
causes the specified `gcc' to be used as the C compiler (unless it is
overridden in the site shell script). Here is a another example:
/bin/bash ./configure CONFIG_SHELL=/bin/bash
Here the `CONFIG_SHELL=/bin/bash' operand causes subsequent
configuration-related scripts to be executed by `/bin/bash'.
`configure' Invocation
======================
`configure' recognizes the following options to control how it operates.
`--help'
`-h'
Print a summary of the options to `configure', and exit.
`--version'
`-V'
Print the version of Autoconf used to generate the `configure'
script, and exit.
`--cache-file=FILE'
Enable the cache: use and save the results of the tests in FILE,
traditionally `config.cache'. FILE defaults to `/dev/null' to
disable caching.
`--config-cache'
`-C'
Alias for `--cache-file=config.cache'.
`--quiet'
`--silent'
`-q'
Do not print messages saying which checks are being made. To
suppress all normal output, redirect it to `/dev/null' (any error
messages will still be shown).
`--srcdir=DIR'
Look for the package's source code in directory DIR. Usually
`configure' can determine that directory automatically.
`configure' also accepts some other, not widely useful, options. Run
`configure --help' for more details.
AMDiS/Makefile.am deleted 100644 → 0
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SUBDIRS = lib bin
EXTRA_DIST = demo
AMDiS/Makefile.in deleted 100644 → 0
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# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT:
AMDiS/NEWS deleted 100644 → 0
View file @ 499f2ad3
AMDiS/README
View file @ 8272e4a7
================== Install AMDiS ===================
Testing AMDiS
--------------
To install AMDiS run the following commands:
testing the compilation of amdis is done after configuring the binary using cmake. The compile test is run using
ctest -V -S CTestScript.cmake
./configure --prefix=`pwd` [--enable-debug]
[--enable-intel]
[--with-mpi=<MPI-DIR>]
[--with-parmetis]
(omit the argument -V to remove the output)
make install
Note that for debugging your application you should enable the flag
--enable-debug. If you do not need debugging information but, instead,
your application should run as fast as possible, do not set this flag.
The runtime will increase by factor 5 to 6 without --enable-debug!
================== Compile AMDiS on mars ===================
1) Load the Inter compiler:
module load icc
2) Change to the directory AMDiS/lib/ParMetis-3.1
3) Compile ParMETIS with:
make CC=icc LD=icc
4) Change to the AMDiS directory
5) Run the configure script:
./configure --prefix=`pwd` --enable-intel --enable-parmetis
You can also enabel --enable-debug. Enabling MPI using --with-mpi
does not work on mars and it is not necessary to use this parameter
to compile AMDiS with MPI on mars. Note taht is is also possible to
compile with gcc (just omit --enable-intel), but the result is less
performant. Compiling with the Intel compiler results in a huge
number of warnings. Just ignore them.
6) Start compiling with:
make install
7) To compile the demos you have to edit the Makefile in the demo
directory. At the beginning of the file you will find several
parameters, which you have to define in order to compiler the demos
properly.
================== Compile AMDiS on deimos ===================
1) Load MPI support for the GNU compiler:
module load openmpi
2) Change to the directory AMDiS/lib/ParMetis-3.1
3) Compile ParMETIS with:
make
4) Change to the AMDiS directory
5) Run the configure script:
./configure --prefix=`pwd` --with-mpi=/licsoft/libraries/openmpi/1.2.6/64bit --enable-parmetis
You may also enable --enable-debug.
6) Start compiling with:
make install
7) To compile the demos you have to edit the Makefile in the demo
directory. At the beginning of the file you will find several
parameters, which you have to define in order to compiler the demos
properly.
================== Remake AMDiS' make system ===================
If you have added a new source file or you want to change something
on the automake-system, you have to rerun the following commands:
libtoolize --copy --force
aclocal
autoconf
automake --copy --add-missing
Hint: This test only compiles the given configuration from a previous cmake run. If you want to test the demos, initfiles and so on, you have to check out https://fusionforge.zih.tu-dresden.de/svn/amdis/trunk/tools/test and have a look at the README there.
AMDiS/Radiosity/3d/GL/glu.h deleted 100755 → 0
View file @ 499f2ad3
/* $Id: glu.h,v 1.1 2005/07/27 13:28:46 weichmann Exp $ */
/*
* Mesa 3-D graphics library
* Version: 3.3
*
* Copyright (C) 1995-1999 Brian Paul
*
* This library is free software; you can redistribute it and/or
* modify it under the terms of the GNU Library General Public
* License as published by the Free Software Foundation; either
* version 2 of the License, or (at your option) any later version.
*
* This library is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
* Library General Public License for more details.
*
* You should have received a copy of the GNU Library General Public
* License along with this library; if not, write to the Free
* Software Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA.
*/
#ifndef __glu_h__
#define __glu_h__
#if defined(USE_MGL_NAMESPACE)
#include "glu_mangle.h"
#endif
#include "GL/gl.h"
#ifdef __cplusplus
extern "C" {
#endif
/* to facilitate clean DLL building ... */
#if !defined(OPENSTEP) && (defined(__WIN32__) || defined(__CYGWIN32__))
# if defined(_MSC_VER) && defined(BUILD_GLU32) /* tag specify we're building mesa as a DLL */
# define GLUAPI __declspec(dllexport)
# elif defined(_MSC_VER) && defined(_DLL) /* tag specifying we're building for DLL runtime support */
# define GLUAPI __declspec(dllimport)
# else /* for use with static link lib build of Win32 edition only */
# define GLUAPI extern
# endif /* _STATIC_MESA support */
#else
# define GLUAPI extern
#endif /* WIN32 / CYGWIN32 bracket */
#ifdef macintosh
#pragma enumsalwaysint on
#if PRAGMA_IMPORT_SUPPORTED
#pragma import on
#endif
#endif
#ifndef GLUAPI
#define GLUAPI
#endif
#ifndef GLAPIENTRY
#define GLAPIENTRY
#endif
#ifndef GLCALLBACK
#define GLCALLBACK
#endif
#define GLU_VERSION_1_1 1
#define GLU_VERSION_1_2 1
#define GLU_TRUE 1
#define GLU_FALSE 0
/* Normal vectors */
#define GLU_SMOOTH 100000
#define GLU_FLAT 100001
#define GLU_NONE 100002
/* Quadric draw styles */
#define GLU_POINT 100010
#define GLU_LINE 100011
#define GLU_FILL 100012
#define GLU_SILHOUETTE 100013
/* Quadric orientation */
#define GLU_OUTSIDE 100020
#define GLU_INSIDE 100021
/* Tessellator */
#define GLU_TESS_BEGIN 100100
#define GLU_TESS_VERTEX 100101
#define GLU_TESS_END 100102
#define GLU_TESS_ERROR 100103
#define GLU_TESS_EDGE_FLAG 100104
#define GLU_TESS_COMBINE 100105
#define GLU_TESS_BEGIN_DATA 100106
#define GLU_TESS_VERTEX_DATA 100107
#define GLU_TESS_END_DATA 100108
#define GLU_TESS_ERROR_DATA 100109
#define GLU_TESS_EDGE_FLAG_DATA 100110
#define GLU_TESS_COMBINE_DATA 100111
/* Winding rules */
#define GLU_TESS_WINDING_ODD 100130
#define GLU_TESS_WINDING_NONZERO 100131
#define GLU_TESS_WINDING_POSITIVE 100132
#define GLU_TESS_WINDING_NEGATIVE 100133
#define GLU_TESS_WINDING_ABS_GEQ_TWO 100134
/* Tessellation properties */
#define GLU_TESS_WINDING_RULE 100140
#define GLU_TESS_BOUNDARY_ONLY 100141
#define GLU_TESS_TOLERANCE 100142
/* Tessellation errors */
#define GLU_TESS_ERROR1 100151 /* Missing gluBeginPolygon */
#define GLU_TESS_ERROR2 100152 /* Missing gluBeginContour */
#define GLU_TESS_ERROR3 100153 /* Missing gluEndPolygon */
#define GLU_TESS_ERROR4 100154 /* Missing gluEndContour */
#define GLU_TESS_ERROR5 100155 /* */
#define GLU_TESS_ERROR6 100156 /* */
#define GLU_TESS_ERROR7 100157 /* */
#define GLU_TESS_ERROR8 100158 /* */
/* NURBS */
#define GLU_AUTO_LOAD_MATRIX 100200
#define GLU_CULLING 100201
#define GLU_PARAMETRIC_TOLERANCE 100202
#define GLU_SAMPLING_TOLERANCE 100203
#define GLU_DISPLAY_MODE 100204
#define GLU_SAMPLING_METHOD 100205
#define GLU_U_STEP 100206
#define GLU_V_STEP 100207
#define GLU_PATH_LENGTH 100215
#define GLU_PARAMETRIC_ERROR 100216
#define GLU_DOMAIN_DISTANCE 100217
#define GLU_MAP1_TRIM_2 100210
#define GLU_MAP1_TRIM_3 100211
#define GLU_OUTLINE_POLYGON 100240
#define GLU_OUTLINE_PATCH 100241
#define GLU_NURBS_ERROR1 100251 /* spline order un-supported */
#define GLU_NURBS_ERROR2 100252 /* too few knots */
#define GLU_NURBS_ERROR3 100253 /* valid knot range is empty */
#define GLU_NURBS_ERROR4 100254 /* decreasing knot sequence */
#define GLU_NURBS_ERROR5 100255 /* knot multiplicity > spline order */
#define GLU_NURBS_ERROR6 100256 /* endcurve() must follow bgncurve() */
#define GLU_NURBS_ERROR7 100257 /* bgncurve() must precede endcurve() */
#define GLU_NURBS_ERROR8 100258 /* ctrlarray or knot vector is NULL */
#define GLU_NURBS_ERROR9 100259 /* can't draw pwlcurves */
#define GLU_NURBS_ERROR10 100260 /* missing gluNurbsCurve() */
#define GLU_NURBS_ERROR11 100261 /* missing gluNurbsSurface() */
#define GLU_NURBS_ERROR12 100262 /* endtrim() must precede endsurface() */
#define GLU_NURBS_ERROR13 100263 /* bgnsurface() must precede endsurface() */
#define GLU_NURBS_ERROR14 100264 /* curve of improper type passed as trim curve */
#define GLU_NURBS_ERROR15 100265 /* bgnsurface() must precede bgntrim() */
#define GLU_NURBS_ERROR16 100266 /* endtrim() must follow bgntrim() */
#define GLU_NURBS_ERROR17 100267 /* bgntrim() must precede endtrim()*/
#define GLU_NURBS_ERROR18 100268 /* invalid or missing trim curve*/
#define GLU_NURBS_ERROR19 100269 /* bgntrim() must precede pwlcurve() */
#define GLU_NURBS_ERROR20 100270 /* pwlcurve referenced twice*/
#define GLU_NURBS_ERROR21 100271 /* pwlcurve and nurbscurve mixed */
#define GLU_NURBS_ERROR22 100272 /* improper usage of trim data type */
#define GLU_NURBS_ERROR23 100273 /* nurbscurve referenced twice */
#define GLU_NURBS_ERROR24 100274 /* nurbscurve and pwlcurve mixed */
#define GLU_NURBS_ERROR25 100275 /* nurbssurface referenced twice */
#define GLU_NURBS_ERROR26 100276 /* invalid property */
#define GLU_NURBS_ERROR27 100277 /* endsurface() must follow bgnsurface() */
#define GLU_NURBS_ERROR28 100278 /* intersecting or misoriented trim curves */
#define GLU_NURBS_ERROR29 100279 /* intersecting trim curves */
#define GLU_NURBS_ERROR30 100280 /* UNUSED */
#define GLU_NURBS_ERROR31 100281 /* unconnected trim curves */
#define GLU_NURBS_ERROR32 100282 /* unknown knot error */
#define GLU_NURBS_ERROR33 100283 /* negative vertex count encountered */
#define GLU_NURBS_ERROR34 100284 /* negative byte-stride */
#define GLU_NURBS_ERROR35 100285 /* unknown type descriptor */
#define GLU_NURBS_ERROR36 100286 /* null control point reference */
#define GLU_NURBS_ERROR37 100287 /* duplicate point on pwlcurve */
/* GLU 1.3 and later */
#define GLU_NURBS_MODE ?
/* Errors */
#define GLU_INVALID_ENUM 100900
#define GLU_INVALID_VALUE 100901
#define GLU_OUT_OF_MEMORY 100902
#define GLU_INCOMPATIBLE_GL_VERSION 100903
/* GLU 1.1 and later */
#define GLU_VERSION 100800
#define GLU_EXTENSIONS 100801
/*** GLU 1.0 tessellation - obsolete! ***/
/* Contour types */
#define GLU_CW 100120
#define GLU_CCW 100121
#define GLU_INTERIOR 100122
#define GLU_EXTERIOR 100123
#define GLU_UNKNOWN 100124
/* Tessellator */
#define GLU_BEGIN GLU_TESS_BEGIN
#define GLU_VERTEX GLU_TESS_VERTEX
#define GLU_END GLU_TESS_END
#define GLU_ERROR GLU_TESS_ERROR
#define GLU_EDGE_FLAG GLU_TESS_EDGE_FLAG
/*
* These are the GLU 1.1 typedefs. GLU 1.3 has different ones!
*/
#if defined(__BEOS__)
/* The BeOS does something funky and makes these typedefs in one
* of its system headers.
*/
#else
typedef struct GLUquadric GLUquadricObj;
typedef struct GLUnurbs GLUnurbsObj;
/* FIXME: We need to implement the other 1.3 typedefs - GH */
typedef struct GLUtesselator GLUtesselator;
typedef GLUtesselator GLUtriangulatorObj;
#endif
#if defined(__BEOS__) || defined(__QUICKDRAW__)
#pragma export on
#endif
/*
*
* Miscellaneous functions
*
*/
GLUAPI void GLAPIENTRY gluLookAt( GLdouble eyex, GLdouble eyey, GLdouble eyez,
GLdouble centerx, GLdouble centery,
GLdouble centerz,
GLdouble upx, GLdouble upy, GLdouble upz );
GLUAPI void GLAPIENTRY gluOrtho2D( GLdouble left, GLdouble right,
GLdouble bottom, GLdouble top );
GLUAPI void GLAPIENTRY gluPerspective( GLdouble fovy, GLdouble aspect,
GLdouble zNear, GLdouble zFar );
GLUAPI void GLAPIENTRY gluPickMatrix( GLdouble x, GLdouble y,
GLdouble width, GLdouble height,
const GLint viewport[4] );
GLUAPI GLint GLAPIENTRY gluProject( GLdouble objx, GLdouble objy, GLdouble objz,
const GLdouble modelMatrix[16],
const GLdouble projMatrix[16],
const GLint viewport[4],
GLdouble *winx, GLdouble *winy,
GLdouble *winz );
GLUAPI GLint GLAPIENTRY gluUnProject( GLdouble winx, GLdouble winy,
GLdouble winz,
const GLdouble modelMatrix[16],
const GLdouble projMatrix[16],
const GLint viewport[4],
GLdouble *objx, GLdouble *objy,
GLdouble *objz );
GLUAPI const GLubyte* GLAPIENTRY gluErrorString( GLenum errorCode );
/*
*
* Mipmapping and image scaling
*
*/
GLUAPI GLint GLAPIENTRY gluScaleImage( GLenum format,
GLint widthin, GLint heightin,
GLenum typein, const void *datain,
GLint widthout, GLint heightout,
GLenum typeout, void *dataout );
GLUAPI GLint GLAPIENTRY gluBuild1DMipmaps( GLenum target, GLint components,
GLint width, GLenum format,
GLenum type, const void *data );
GLUAPI GLint GLAPIENTRY gluBuild2DMipmaps( GLenum target, GLint components,
GLint width, GLint height,
GLenum format,
GLenum type, const void *data );
/*
*
* Quadrics
*
*/
GLUAPI GLUquadricObj* GLAPIENTRY gluNewQuadric( void );
GLUAPI void GLAPIENTRY gluDeleteQuadric( GLUquadricObj *state );
GLUAPI void GLAPIENTRY gluQuadricDrawStyle( GLUquadricObj *quadObject,
GLenum drawStyle );
GLUAPI void GLAPIENTRY gluQuadricOrientation( GLUquadricObj *quadObject,
GLenum orientation );
GLUAPI void GLAPIENTRY gluQuadricNormals( GLUquadricObj *quadObject,
GLenum normals );
GLUAPI void GLAPIENTRY gluQuadricTexture( GLUquadricObj *quadObject,
GLboolean textureCoords );
GLUAPI void GLAPIENTRY gluQuadricCallback( GLUquadricObj *qobj,
GLenum which,
void (GLCALLBACK *fn)() );
GLUAPI void GLAPIENTRY gluCylinder( GLUquadricObj *qobj,
GLdouble baseRadius,
GLdouble topRadius,
GLdouble height,
GLint slices, GLint stacks );
GLUAPI void GLAPIENTRY gluSphere( GLUquadricObj *qobj,
GLdouble radius, GLint slices,
GLint stacks );
GLUAPI void GLAPIENTRY gluDisk( GLUquadricObj *qobj,
GLdouble innerRadius, GLdouble outerRadius,
GLint slices, GLint loops );
GLUAPI void GLAPIENTRY gluPartialDisk( GLUquadricObj *qobj, GLdouble innerRadius,
GLdouble outerRadius, GLint slices,
GLint loops, GLdouble startAngle,
GLdouble sweepAngle );
/*
*
* Nurbs
*
*/
GLUAPI GLUnurbsObj* GLAPIENTRY gluNewNurbsRenderer( void );
GLUAPI void GLAPIENTRY gluDeleteNurbsRenderer( GLUnurbsObj *nobj );
GLUAPI void GLAPIENTRY gluLoadSamplingMatrices( GLUnurbsObj *nobj,
const GLfloat modelMatrix[16],
const GLfloat projMatrix[16],
const GLint viewport[4] );
GLUAPI void GLAPIENTRY gluNurbsProperty( GLUnurbsObj *nobj, GLenum property,
GLfloat value );
GLUAPI void GLAPIENTRY gluGetNurbsProperty( GLUnurbsObj *nobj, GLenum property,
GLfloat *value );
GLUAPI void GLAPIENTRY gluBeginCurve( GLUnurbsObj *nobj );
GLUAPI void GLAPIENTRY gluEndCurve( GLUnurbsObj * nobj );
GLUAPI void GLAPIENTRY gluNurbsCurve( GLUnurbsObj *nobj, GLint nknots,
GLfloat *knot, GLint stride,
GLfloat *ctlarray, GLint order,
GLenum type );
GLUAPI void GLAPIENTRY gluBeginSurface( GLUnurbsObj *nobj );
GLUAPI void GLAPIENTRY gluEndSurface( GLUnurbsObj * nobj );
GLUAPI void GLAPIENTRY gluNurbsSurface( GLUnurbsObj *nobj,
GLint sknot_count, GLfloat *sknot,
GLint tknot_count, GLfloat *tknot,
GLint s_stride, GLint t_stride,
GLfloat *ctlarray,
GLint sorder, GLint torder,
GLenum type );
GLUAPI void GLAPIENTRY gluBeginTrim( GLUnurbsObj *nobj );
GLUAPI void GLAPIENTRY gluEndTrim( GLUnurbsObj *nobj );
GLUAPI void GLAPIENTRY gluPwlCurve( GLUnurbsObj *nobj, GLint count,
GLfloat *array, GLint stride,
GLenum type );
GLUAPI void GLAPIENTRY gluNurbsCallback( GLUnurbsObj *nobj, GLenum which,
void (GLCALLBACK *fn)() );
/*
*
* Polygon tessellation
*
*/
GLUAPI GLUtesselator* GLAPIENTRY gluNewTess( void );
GLUAPI void GLAPIENTRY gluDeleteTess( GLUtesselator *tobj );
GLUAPI void GLAPIENTRY gluTessBeginPolygon( GLUtesselator *tobj,
void *polygon_data );
GLUAPI void GLAPIENTRY gluTessBeginContour( GLUtesselator *tobj );
GLUAPI void GLAPIENTRY gluTessVertex( GLUtesselator *tobj, GLdouble coords[3],
void *vertex_data );
GLUAPI void GLAPIENTRY gluTessEndContour( GLUtesselator *tobj );
GLUAPI void GLAPIENTRY gluTessEndPolygon( GLUtesselator *tobj );
GLUAPI void GLAPIENTRY gluTessProperty( GLUtesselator *tobj, GLenum which,
GLdouble value );
GLUAPI void GLAPIENTRY gluTessNormal( GLUtesselator *tobj, GLdouble x,
GLdouble y, GLdouble z );
GLUAPI void GLAPIENTRY gluTessCallback( GLUtesselator *tobj, GLenum which,
void (GLCALLBACK *fn)() );
GLUAPI void GLAPIENTRY gluGetTessProperty( GLUtesselator *tobj, GLenum which,
GLdouble *value );
/*
*
* Obsolete 1.0 tessellation functions
*
*/
GLUAPI void GLAPIENTRY gluBeginPolygon( GLUtesselator *tobj );
GLUAPI void GLAPIENTRY gluNextContour( GLUtesselator *tobj, GLenum type );
GLUAPI void GLAPIENTRY gluEndPolygon( GLUtesselator *tobj );
/*
*
* New functions in GLU 1.1
*
*/
GLUAPI const GLubyte* GLAPIENTRY gluGetString( GLenum name );
/*
*
* GLU 1.3 functions
*
*/
GLUAPI GLboolean GLAPIENTRY
gluCheckExtension(const char *extName, const GLubyte *extString);
GLUAPI GLint GLAPIENTRY
gluBuild3DMipmaps( GLenum target, GLint internalFormat, GLsizei width,
GLsizei height, GLsizei depth, GLenum format,
GLenum type, const void *data );
GLUAPI GLint GLAPIENTRY
gluBuild1DMipmapLevels( GLenum target, GLint internalFormat, GLsizei width,
GLenum format, GLenum type, GLint level, GLint base,
GLint max, const void *data );
GLUAPI GLint GLAPIENTRY
gluBuild2DMipmapLevels( GLenum target, GLint internalFormat, GLsizei width,
GLsizei height, GLenum format, GLenum type,
GLint level, GLint base, GLint max,
const void *data );
GLUAPI GLint GLAPIENTRY
gluBuild3DMipmapLevels( GLenum target, GLint internalFormat, GLsizei width,
GLsizei height, GLsizei depth, GLenum format,
GLenum type, GLint level, GLint base, GLint max,
const void *data );
GLUAPI GLint GLAPIENTRY
gluUnProject4( GLdouble winx, GLdouble winy, GLdouble winz, GLdouble clipw,
const GLdouble modelMatrix[16], const GLdouble projMatrix[16],
const GLint viewport[4], GLclampd zNear, GLclampd zFar,
GLdouble *objx, GLdouble *objy, GLdouble *objz,
GLdouble *objw );
#if defined(__BEOS__) || defined(__QUICKDRAW__)
#pragma export off
#endif
#ifdef macintosh
#pragma enumsalwaysint reset
#if PRAGMA_IMPORT_SUPPORTED
#pragma import off
#endif
#endif
#ifdef __cplusplus
}
#endif
#endif /* __glu_h__ */
AMDiS/Reinit/Makefile deleted 100644 → 0
View file @ 499f2ad3
SHELL = /bin/sh
COMPILE = g++
DEFS = -DPACKAGE=\"AMDiS\" -DVERSION=\"0.1\" -DHAVE_DLFCN_H=1
DEBUG = 0
AMDIS_DIR = ../
INCLUDES = -I./src -I$(AMDIS_DIR)/src -I$(AMDIS_DIR)/compositeFEM/src -I$(AMDIS_DIR)/lib/mtl4
ifeq ($(strip $(DEBUG)), 0)
CPPFLAGS = -O2
else
CPPFLAGS = -g -O0
endif
CPPFLAGS += -ftemplate-depth-40
VPATH = .:$(AMDIS_DIR)/Reinit/src
LIBOFILES = \
BoundaryElementDist.o \
BoundaryElementNormalDist.o \
BoundaryElementLevelSetDist.o \
BoundaryElementTopDist.o \
BoundaryElementEdgeDist.o \
ElementLevelSet.o \
ElementUpdate_2d.o \
ElementUpdate_3d.o \
HL_SignedDist.o \
HL_SignedDistTraverse.o \
VelocityExt.o \
VelocityExtFromVelocityField.o \
NormEps.o
all: libreinit.a
# statische Bibliothek
libreinit.a: $(LIBOFILES)
rm -f lib/libreinit.a
ar cq lib/libreinit.a $(LIBOFILES)
.cc.o: $*.cc
$(COMPILE) $(DEFS) $(INCLUDES) $(CPPFLAGS) -c -o $*.o $<
clean:
-rm -rf *.o
AMDiS/Reinit/src/HL_SignedDistLevels.cc deleted 100644 → 0
View file @ 499f2ad3
This diff is collapsed.
AMDiS/Reinit/src/HL_SignedDistLevels.h deleted 100644 → 0
View file @ 499f2ad3
#ifndef HL_SIGNEDDISTLEVELS
#define HL_SIGNEDDISTLEVELS
#include <queue>
#include <vector>
#include <time.h>
#include "ElInfo.h"
#include "FixVec.h"
#include "Traverse.h"
#include "ElementLevelSet.h"
#include "BoundaryElementDist.h"
#include "ElementUpdate.h"
#include "ElementUpdate_2d.h"
#include "ElementUpdate_3d.h"
#include "HL_SignedDist.h"
#include "VelocityExt.h"
#include "SMIAdapter.h"
#include "smi.h"
using namespace AMDiS;
typedef struct
{
int ElNum;
int VertNum;
} Vert_Struct;
class HL_SignedDistLevels : public HL_SignedDist
{
public:
HL_SignedDistLevels(const char *name_,
int dim_,
bool doVelocityExt = false,
Flag velExtType_ = VEL_EXT)
: HL_SignedDist(name_, dim_, doVelocityExt, velExtType_),
smiAdapter(NULL)
{
FUNCNAME("HL_SignedDistLevels::HL_SignedDistLevels()");
// ===== Read parameters from init file. =====
GET_PARAMETER(0, name + "->tolerance", "%f", &tol);
GET_PARAMETER(0, name + "->count_how_often_saved_in_list", "%d", &count_in_list);
GET_PARAMETER(0, name + "->save_in_list->the ..th", "%d", &print_in_list);
GET_PARAMETER(0, name + "->save_in_list->after the ..th traversing of the list", "%d", &print_in_list_2);
GET_PARAMETER(0, name + "->print_level", "%d", &chosen_level);
GET_PARAMETER(0, name + "->print_level_yes_no", "%d", &print_level);
TEST_EXIT(tol > 0)("illegal tolerance !\n");
}
protected:
/**
* Initializes the boundary: calculation of the distance of boundary
* vertices to the interface.
* Interface is given by \ref lS_DOF and result is stored in
* \ref sD_DOF.
*/
void initializeBoundary();
/**
* function for transvering Mesh to SMi an Adding the quantities
**/
void Mesh_to_SMI_and_quantity ();
/**
* function for creating the first list, in which elementnumber of
* boundary-elements are saved
*/
void createFirstList(const int elStatus,
const int *elVertStatusVec,
int ElNum,
const int NumVertIntPoints);
/**
* Calculates the distance function and stores result in sD_DOF.
* Requirement: The boundary values are already set in \ref sD_DOF.
*/
void HL_updateIteration();
/**
* function for traversing the list "List_Element"
* returns 1 if min one element is set in the new list
* returns 0 if no element is set in the new list
*/
int traverseListElement();
/**
* function for creating all levels higher than 1 an saving pairs of
* elements and node in the right list
**/
void createLevels ();
/**
* function collects the next neighbours, creates an according list
* and saves the pair in it
* returns true if one or more neighbours exist and false if not
**/
bool collectNeighbours_setLevels (const int Element,
const int currentIndex,
bool *elementInNewListSet);
/**
* function for traversing the list of list, named "Level_"
**/
void traversingListLevel_ ( DOFVector<double> *boundVal_DOF );
/**
* calls the next neighbours and puts them into the right list
* returns true if an element had to be saved in an lower level
* than the current index
* this means the loop over all lists Level_[i] has to be repaeated again
* "Vert" is a local node
**/
bool search_and_include_comb(int ElNum,
int Vert,
int *nodeIndices,
const int Index);
/**
* checking whether the element "ElNum_in" has to be included into
* the second list
* if yes it will be included
* returns true if the level of the element is smaler than he current index
* returns false if the level is greater thean the current index
* "Vert_1_in" and "Vert_2_in" are localvertizes
*/
bool includeIntoList (int ElNum_in,
int VertNum_1_in,
int VertNum_2_in,
const int Index);
/**
* gets the neighbour according to the node "VertNum_in" and two of
* its nodes (in local koordinates)
* returns "false" if the called neighbour exists and "true" if not
* Vert_Up_in is given in global coordinates, the other points are
* given in local coordinates
*/
bool getNextNeighbour (const int ElNum_in,
const int Vert_Up_in,
const int VertNum_in,
int &ElNum_out,
int &VertNum_1_out,
int &VertNum_2_out);
/**
* function needed in the function "traversingListELVert"
**/
int getNext_node_l_r (int elem_l_r_in,
int neighbour_l_r_in,
int node_l_r_in,
const int Vert);
//==================================
void print_quantity_5 (int cntr);
/**
* function for printinq the quantity 6
* attention: we need at least read_transaction in smi for calling
* this function
**/
void print_quantity_6 ();
//====================================
protected:
/**
* Tolerance for Hopf-Lax update iteration loop.
*/
double tol;
/**
* is needed for transfering the mesh to SMI
*/
SMIAdapter *smiAdapter;
/**
* in this list boundary-elements are saved;
* is needed for creating the list "List_El_Vert"
*/
queue<int> List_Element;
/**
* in this list structs filled with element-number and vertex-number
* are saved;
* is needed for traversing the mesh efficiently
*/
queue<Vert_Struct> Level;
queue<Vert_Struct> helpLevel;
queue<Vert_Struct> List_El_Vert; //Listen noch einmal kontrollieren!
/**
* in this vector the lists of different levels are saved
**/
vector<queue<Vert_Struct> > Level_;
/**
* 0 ->do not count updates
* 1 ->count updates
**/
int count_updates;
/**
* 1 -> it will be count how often a node is saved in the second list
* 0 ->it will not be count
**/
int count_in_list;
int print_in_list;
int print_in_list_2;
/**
* level which will be printed in a file
**/
int chosen_level;
/**
* 1->a special level will be printed in a file
* 0->no level is printed in a file
**/
int print_level;
};
#endif // HL_SIGNEDDISTLEVELS
AMDiS/aclocal.m4 deleted 100644 → 0
View file @ 499f2ad3
This diff is collapsed.
AMDiS/autogen.sh deleted 100755 → 0
View file @ 499f2ad3
#!/bin/sh
echo "--> Running aclocal"
aclocal
if test "$?" != "0" ; then
echo "*** aclocal failed"
exit 1
fi
if test "`grep AC_CONFIG_HEADER configure.ac`" != "" -o \
"`grep AM_CONFIG_HEADER configure.ac`" != "" ; then
# if we use CONFIG_HEADER, then make sure to run autoheader
echo "--> Running autoheader"
autoheader
if test "$?" != "0" ; then
echo "*** autoheader failed"
exit 1
fi
else
echo "--> autoheader not needed"
fi
echo "--> Running autoconf"
autoconf
if test "$?" != "0" ; then
echo "*** autoconf failed"
exit 1
fi
echo "--> Running libtoolize"
libtoolize --automake --copy
if test "$?" != "0" ; then
echo "*** libtoolize failed"
exit 1
fi
echo "--> Running automake"
automake -a --copy --include-deps
if test "$?" != "0" ; then
echo "*** automake failed"
exit 1
fi
echo;
echo "Running ./configure $@"
echo;
./configure $@
AMDiS/bin/Makefile.am deleted 100644 → 0
View file @ 499f2ad3
lib_LTLIBRARIES = libamdis.la libcompositeFEM.la
SOURCE_DIR = ../src
LIB_DIR = ../lib
PARALLEL_DIR = $(SOURCE_DIR)
PARMETIS_DIR = ../lib/ParMetis-3.1
AMDIS_INCLUDES = -I$(SOURCE_DIR)
libamdis_la_CXXFLAGS =
if USE_PARALLEL_AMDIS
PARALLEL_AMDIS_SOURCES = \
$(PARALLEL_DIR)/ConditionalEstimator.h $(PARALLEL_DIR)/ConditionalEstimator.cc \
$(PARALLEL_DIR)/ConditionalMarker.h \ $(PARALLEL_DIR)/ConditionalMarker.cc \
$(PARALLEL_DIR)/ParallelError.h $(PARALLEL_DIR)/ParallelError.hh \
$(PARALLEL_DIR)/ParallelProblem.h $(PARALLEL_DIR)/ParallelProblem.cc \
$(PARALLEL_DIR)/ParMetisPartitioner.h $(PARALLEL_DIR)/ParMetisPartitioner.cc \
$(PARALLEL_DIR)/PartitionElementData.h \
$(PARALLEL_DIR)/PollutionError.h $(PARALLEL_DIR)/PollutionError.cc
PARALLEL_INCLUDES = -I$(MPI_DIR)/include -I$(PARMETIS_DIR)
libamdis_la_CXXFLAGS += -DHAVE_PARALLEL_AMDIS=1
else
PARALLEL_AMDIS_SOURCES =
PARALLEL_INCLUDES =
endif
if USE_PARALLEL_DOMAIN_AMDIS
PARALLEL_AMDIS_SOURCES += \
$(SOURCE_DIR)/parallel/StdMpi.h $(SOURCE_DIR)/parallel/StdMpi.cc \
$(SOURCE_DIR)/parallel/ParallelDomainBase.h $(SOURCE_DIR)/parallel/ParallelDomainBase.cc \
$(SOURCE_DIR)/parallel/ParallelDomainDbg.h $(SOURCE_DIR)/parallel/ParallelDomainDbg.cc \
$(SOURCE_DIR)/parallel/GlobalMatrixSolver.h $(SOURCE_DIR)/parallel/GlobalMatrixSolver.cc \
$(SOURCE_DIR)/parallel/MpiHelper.h $(SOURCE_DIR)/parallel/MpiHelper.cc
libamdis_la_CXXFLAGS += -DHAVE_PARALLEL_DOMAIN_AMDIS=1
AMDIS_INCLUDES += -I$(PETSC_DIR)/include -I$(PETSC_DIR)/$(PETSC_ARCH)/include
endif
if ENABLE_UMFPACK
libamdis_la_CXXFLAGS += -DHAVE_UMFPACK=1 -DMTL_HAS_UMFPACK
AMDIS_INCLUDES += -I$(LIB_DIR)/UFconfig \
-I$(LIB_DIR)/AMD/Include \
-I$(LIB_DIR)/UMFPACK/Include
endif
if ENABLE_MKL
libamdis_la_CXXFLAGS += -DHAVE_MKL=1 -I${MKL_INC}
endif
if ENABLE_DUNE
libamdis_la_CXXFLAGS += -DHAVE_DUNE=1
AMDIS_INCLUDES += -I$(DUNE_DIR)
endif
if ENABLE_BOOST
libamdis_la_CXXFLAGS += -DHAVE_BOOST=1
endif
TEMPLATE_INCLUDES = -I../lib/mtl4
INCLUDES = $(AMDIS_INCLUDES) $(PARALLEL_INCLUDES) $(TEMPLATE_INCLUDES)
if AMDIS_DEBUG
libamdis_la_CXXFLAGS += -g -O0 -Wall -DDEBUG=1 $(OPENMP_FLAG) $(INCLUDES) #-pedantic
else
libamdis_la_CXXFLAGS += -O2 -Wall -DDEBUG=0 -DNDEBUG $(OPENMP_FLAG) -ftemplate-depth-100 $(INCLUDES) #-pedantic
endif
libamdis_la_SOURCES = \
$(PARALLEL_AMDIS_SOURCES) \
$(SOURCE_DIR)/DOFIndexed.h $(SOURCE_DIR)/DOFIndexed.cc \
$(SOURCE_DIR)/GNUPlotWriter.h $(SOURCE_DIR)/GNUPlotWriter.cc \
$(SOURCE_DIR)/VertexVector.h $(SOURCE_DIR)/VertexVector.cc \
$(SOURCE_DIR)/PeriodicBC.h $(SOURCE_DIR)/PeriodicBC.cc \
$(SOURCE_DIR)/Recovery.h $(SOURCE_DIR)/Recovery.cc \
$(SOURCE_DIR)/RecoveryEstimator.h $(SOURCE_DIR)/RecoveryEstimator.cc \
$(SOURCE_DIR)/ResidualEstimator.h $(SOURCE_DIR)/ResidualEstimator.cc \
$(SOURCE_DIR)/Cholesky.h $(SOURCE_DIR)/Cholesky.cc \
$(SOURCE_DIR)/AdaptBase.h $(SOURCE_DIR)/AdaptBase.cc \
$(SOURCE_DIR)/ProblemIterationInterface.h \
$(SOURCE_DIR)/StandardProblemIteration.h $(SOURCE_DIR)/StandardProblemIteration.cc \
$(SOURCE_DIR)/ProblemScal.h $(SOURCE_DIR)/ProblemScal.cc \
$(SOURCE_DIR)/ProblemVec.h $(SOURCE_DIR)/ProblemVec.cc \
$(SOURCE_DIR)/ProblemVecDbg.h $(SOURCE_DIR)/ProblemVecDbg.cc \
$(SOURCE_DIR)/DualTraverse.h $(SOURCE_DIR)/DualTraverse.cc \
$(SOURCE_DIR)/ElementPartition_ED.h $(SOURCE_DIR)/SurfacePartition_ED.h \
$(SOURCE_DIR)/ElementData.h $(SOURCE_DIR)/ElementData.cc \
$(SOURCE_DIR)/ComponentTraverseInfo.h $(SOURCE_DIR)/ComponentTraverseInfo.cc \
$(SOURCE_DIR)/CreatorMap.h $(SOURCE_DIR)/CreatorMap.hh $(SOURCE_DIR)/CreatorMap.cc \
$(SOURCE_DIR)/CreatorInterface.h \
$(SOURCE_DIR)/ElementFunction.h \
$(SOURCE_DIR)/ProblemInterpolScal.h $(SOURCE_DIR)/ProblemInterpolScal.cc \
$(SOURCE_DIR)/ProblemInterpolVec.h $(SOURCE_DIR)/ProblemInterpolVec.cc \
$(SOURCE_DIR)/Serializable.h \
$(SOURCE_DIR)/BallProject.h \
$(SOURCE_DIR)/CylinderProject.h \
$(SOURCE_DIR)/MacroReader.h $(SOURCE_DIR)/MacroReader.cc \
$(SOURCE_DIR)/ValueReader.h $(SOURCE_DIR)/ValueReader.cc \
$(SOURCE_DIR)/Projection.h $(SOURCE_DIR)/Projection.cc \
$(SOURCE_DIR)/SubAssembler.h $(SOURCE_DIR)/SubAssembler.cc \
$(SOURCE_DIR)/ZeroOrderAssembler.h $(SOURCE_DIR)/ZeroOrderAssembler.cc \
$(SOURCE_DIR)/FirstOrderAssembler.h $(SOURCE_DIR)/FirstOrderAssembler.cc \
$(SOURCE_DIR)/SecondOrderAssembler.h $(SOURCE_DIR)/SecondOrderAssembler.cc \
$(SOURCE_DIR)/Assembler.h $(SOURCE_DIR)/Assembler.cc \
$(SOURCE_DIR)/AdaptInfo.h $(SOURCE_DIR)/AdaptInfo.cc \
$(SOURCE_DIR)/Marker.h $(SOURCE_DIR)/Marker.cc \
$(SOURCE_DIR)/SystemVector.h \
$(SOURCE_DIR)/SurfaceQuadrature.h $(SOURCE_DIR)/SurfaceQuadrature.cc \
$(SOURCE_DIR)/LeafData.h $(SOURCE_DIR)/LeafData.cc \
$(SOURCE_DIR)/BoundaryManager.h $(SOURCE_DIR)/BoundaryManager.cc \
$(SOURCE_DIR)/BoundaryCondition.h \
$(SOURCE_DIR)/DirichletBC.h $(SOURCE_DIR)/DirichletBC.cc \
$(SOURCE_DIR)/RobinBC.h $(SOURCE_DIR)/RobinBC.cc \
$(SOURCE_DIR)/AbstractFunction.h \
$(SOURCE_DIR)/ProblemStatBase.h \
$(SOURCE_DIR)/DOFContainer.h \
$(SOURCE_DIR)/FileWriter.h $(SOURCE_DIR)/FileWriter.hh $(SOURCE_DIR)/FileWriter.cc \
$(SOURCE_DIR)/ElementFileWriter.h $(SOURCE_DIR)/ElementFileWriter.cc \
$(SOURCE_DIR)/ElInfo.cc \
$(SOURCE_DIR)/ElInfoStack.h $(SOURCE_DIR)/ElInfoStack.cc \
$(SOURCE_DIR)/OperatorTerm.h $(SOURCE_DIR)/OperatorTerm.cc \
$(SOURCE_DIR)/ZeroOrderTerm.h $(SOURCE_DIR)/ZeroOrderTerm.cc \
$(SOURCE_DIR)/FirstOrderTerm.h $(SOURCE_DIR)/FirstOrderTerm.cc \
$(SOURCE_DIR)/SecondOrderTerm.h $(SOURCE_DIR)/SecondOrderTerm.cc \
$(SOURCE_DIR)/Operator.h $(SOURCE_DIR)/Operator.cc \
$(SOURCE_DIR)/Mesh.cc \
$(SOURCE_DIR)/MeshStructure.h $(SOURCE_DIR)/MeshStructure.cc \
$(SOURCE_DIR)/MeshStructure_ED.h \
$(SOURCE_DIR)/AMDiS.h \
$(SOURCE_DIR)/AdaptStationary.h $(SOURCE_DIR)/AdaptStationary.cc \
$(SOURCE_DIR)/AdaptInstationary.h $(SOURCE_DIR)/AdaptInstationary.cc \
$(SOURCE_DIR)/QPsiPhi.h \
$(SOURCE_DIR)/BasisFunction.h \
$(SOURCE_DIR)/Boundary.h \
$(SOURCE_DIR)/ITL_Solver.h \
$(SOURCE_DIR)/CoarseningManager.h \
$(SOURCE_DIR)/CoarseningManager1d.h $(SOURCE_DIR)/CoarseningManager2d.h $(SOURCE_DIR)/CoarseningManager3d.h \
$(SOURCE_DIR)/DOFAdmin.h \
$(SOURCE_DIR)/DOFIterator.h \
$(SOURCE_DIR)/DOFMatrix.h \
$(SOURCE_DIR)/DOFVector.h $(SOURCE_DIR)/DOFVector.hh $(SOURCE_DIR)/DOFVector.cc \
$(SOURCE_DIR)/Element.h $(SOURCE_DIR)/ElementConnection.h \
$(SOURCE_DIR)/ElInfo.h $(SOURCE_DIR)/ElInfo1d.h $(SOURCE_DIR)/ElInfo2d.h $(SOURCE_DIR)/ElInfo3d.h \
$(SOURCE_DIR)/Error.h $(SOURCE_DIR)/Error.hh \
$(SOURCE_DIR)/Estimator.h $(SOURCE_DIR)/Estimator.cc \
$(SOURCE_DIR)/FiniteElemSpace.h \
$(SOURCE_DIR)/FixVec.h $(SOURCE_DIR)/FixVec.hh \
$(SOURCE_DIR)/FixVecConvert.h \
$(SOURCE_DIR)/Flag.h \
$(SOURCE_DIR)/Global.h \
$(SOURCE_DIR)/UmfPackSolver.h \ $(SOURCE_DIR)/UmfPackSolver.hh \
$(SOURCE_DIR)/Lagrange.h $(SOURCE_DIR)/Line.h \
$(SOURCE_DIR)/MacroElement.h $(SOURCE_DIR)/MacroWriter.h \
$(SOURCE_DIR)/Markings.h $(SOURCE_DIR)/Markings.hh \
$(SOURCE_DIR)/Mesh.h \
$(SOURCE_DIR)/Parameters.h \
$(SOURCE_DIR)/Parametric.h \
$(SOURCE_DIR)/Quadrature.h \
$(SOURCE_DIR)/RCNeighbourList.h \
$(SOURCE_DIRe)/RefinementManager.h \
$(SOURCE_DIR)/RefinementManager1d.h \
$(SOURCE_DIR)/RefinementManager2d.h \
$(SOURCE_DIR)/RefinementManager3d.h \
$(SOURCE_DIR)/TecPlotWriter.h $(SOURCE_DIR)/TecPlotWriter.hh \
$(SOURCE_DIR)/Tetrahedron.h \
$(SOURCE_DIR)/Traverse.h \
$(SOURCE_DIR)/Triangle.h \
$(SOURCE_DIR)/NonLinSolver.h $(SOURCE_DIR)/NonLinSolver.hh \
$(SOURCE_DIR)/ProblemInstat.h $(SOURCE_DIR)/ProblemInstat.cc \
$(SOURCE_DIR)/ProblemTimeInterface.h \
$(SOURCE_DIR)/ProblemNonLin.h $(SOURCE_DIR)/ProblemNonLin.cc \
$(SOURCE_DIR)/NonLinUpdater.h $(SOURCE_DIR)/NonLinUpdater.cc \
$(SOURCE_DIR)/Newton.h $(SOURCE_DIR)/Newton.hh \
$(SOURCE_DIR)/NewtonFS.h $(SOURCE_DIR)/NewtonFS.hh \
$(SOURCE_DIR)/GridWriter.h $(SOURCE_DIR)/GridWriter.hh \
$(SOURCE_DIR)/ValueWriter.h \
$(SOURCE_DIR)/QPsiPhi.cc \
$(SOURCE_DIR)/BasisFunction.cc \
$(SOURCE_DIR)/Boundary.cc \
$(SOURCE_DIR)/CoarseningManager.cc \
$(SOURCE_DIR)/CoarseningManager1d.cc \
$(SOURCE_DIR)/CoarseningManager2d.cc \
$(SOURCE_DIR)/CoarseningManager3d.cc \
$(SOURCE_DIR)/DOFAdmin.cc \
$(SOURCE_DIR)/DOFMatrix.cc \
$(SOURCE_DIR)/Element.cc \
$(SOURCE_DIR)/ElInfo1d.cc \
$(SOURCE_DIR)/ElInfo2d.cc \
$(SOURCE_DIR)/ElInfo3d.cc \
$(SOURCE_DIR)/FiniteElemSpace.cc \
$(SOURCE_DIR)/FixVec.cc \
$(SOURCE_DIR)/Global.cc \
$(SOURCE_DIR)/Lagrange.cc \
$(SOURCE_DIR)/Line.cc \
$(SOURCE_DIR)/MacroElement.cc \
$(SOURCE_DIR)/MacroWriter.cc \
$(SOURCE_DIR)/Parameters.cc \
$(SOURCE_DIR)/Parametric.cc \
$(SOURCE_DIR)/Quadrature.cc \
$(SOURCE_DIR)/RCNeighbourList.cc \
$(SOURCE_DIR)/RefinementManager.cc \
$(SOURCE_DIR)/RefinementManager1d.cc \
$(SOURCE_DIR)/RefinementManager2d.cc \
$(SOURCE_DIR)/RefinementManager3d.cc \
$(SOURCE_DIR)/Tetrahedron.cc \
$(SOURCE_DIR)/Traverse.cc \
$(SOURCE_DIR)/TraverseParallel.h $(SOURCE_DIR)/TraverseParallel.cc \
$(SOURCE_DIR)/Triangle.cc \
$(SOURCE_DIR)/TecPlotWriter.cc \
$(SOURCE_DIR)/ValueWriter.cc \
$(SOURCE_DIR)/VtkWriter.h $(SOURCE_DIR)/VtkWriter.cc \
$(SOURCE_DIR)/PngWriter.h $(SOURCE_DIR)/PngWriter.cc \
$(SOURCE_DIR)/PovrayWriter.h $(SOURCE_DIR)/PovrayWriter.cc \
$(SOURCE_DIR)/DataCollector.h $(SOURCE_DIR)/DataCollector.cc \
$(SOURCE_DIR)/ElementInfo.h \
$(SOURCE_DIR)/VertexInfo.h \
$(SOURCE_DIR)/PeriodicInfo.h \
$(SOURCE_DIR)/OpenMP.h \
$(SOURCE_DIR)/ScalableQuadrature.h $(SOURCE_DIR)/ScalableQuadrature.cc \
$(SOURCE_DIR)/SubElInfo.h $(SOURCE_DIR)/SubElInfo.cc \
$(SOURCE_DIR)/SolutionDataStorage.h $(SOURCE_DIR)/SolutionDataStorage.hh \
$(SOURCE_DIR)/ElementDofIteartor.h $(SOURCE_DIR)/ElementDofIterator.cc \
$(SOURCE_DIR)/parallel/InteriorBoundary.h $(SOURCE_DIR)/parallel/InteriorBoundary.cc \
$(SOURCE_DIR)/Debug.h $(SOURCE_DIR)/Debug.cc \
$(SOURCE_DIR)/time/RosenbrockAdaptInstationary.h $(SOURCE_DIR)/time/RosenbrockAdaptInstationary.cc \
$(SOURCE_DIR)/time/RosenbrockStationary.h $(SOURCE_DIR)/time/RosenbrockStationary.cc \
$(SOURCE_DIR)/time/RosenbrockMethod.h $(SOURCE_DIR)/time/RosenbrockMethod.cc
COMPOSITE_SOURCE_DIR = ../compositeFEM/src
libcompositeFEM_la_CXXFLAGS = $(libamdis_la_CXXFLAGS)
libcompositeFEM_la_SOURCES = $(COMPOSITE_SOURCE_DIR)/CFE_Integration.h \
$(COMPOSITE_SOURCE_DIR)/CFE_Integration.cc \
$(COMPOSITE_SOURCE_DIR)/CFE_NormAndErrorFcts.h \
$(COMPOSITE_SOURCE_DIR)/CFE_NormAndErrorFcts.cc \
$(COMPOSITE_SOURCE_DIR)/CompositeFEMMethods.h \
$(COMPOSITE_SOURCE_DIR)/CompositeFEMMethods.cc \
$(COMPOSITE_SOURCE_DIR)/LevelSetAdaptMesh.h \
$(COMPOSITE_SOURCE_DIR)/LevelSetAdaptMesh.cc \
$(COMPOSITE_SOURCE_DIR)/PenaltyOperator.h \
$(COMPOSITE_SOURCE_DIR)/PenaltyOperator.cc \
$(COMPOSITE_SOURCE_DIR)/ElementLevelSet.h \
$(COMPOSITE_SOURCE_DIR)/ElementLevelSet.cc \
$(COMPOSITE_SOURCE_DIR)/CompositeFEMOperator.h \
$(COMPOSITE_SOURCE_DIR)/CompositeFEMOperator.cc \
$(COMPOSITE_SOURCE_DIR)/SubPolytope.h $(COMPOSITE_SOURCE_DIR)/SubPolytope.cc \
$(COMPOSITE_SOURCE_DIR)/SubElementAssembler.h \
$(COMPOSITE_SOURCE_DIR)/SubElementAssembler.cc \
$(COMPOSITE_SOURCE_DIR)/TranslateLsFct.h
AMDiS/bin/Makefile.in deleted 100644 → 0
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AMDiS/cmake/AMDIS.cmake.in 0 → 100644
View file @ 8272e4a7
set(AMDIS_NEED_CXX11 @ENABLE_CXX11@)
set(AMDIS_NEED_UMFPACK @ENABLE_UMFPACK@)
set(AMDIS_NEED_COMPRESSION @ENABLE_COMPRESSION@)
set(AMDIS_NEED_EXTENSIONS @ENABLE_EXTENSIONS@)
set(AMDIS_NEED_BASE_PROBLEMS @ENABLE_BASE_PROBLEMS@)
set(AMDIS_NEED_REINIT @ENABLE_REINIT@)
set(AMDIS_NEED_COMPOSITE_FEM @ENABLE_COMPOSITE_FEM@)
set(AMDIS_NEED_ZOLTAN @ENABLE_ZOLTAN@)
set(AMDIS_NEED_BDDCML @ENABLE_BDDCML@)
set(AMDIS_NEED_HYPRE @ENABLE_HYPRE@)
set(AMDIS_NEED_PNG @ENABLE_PNG@)
set(AMDIS_NEED_SEQ_PETSC @ENABLE_SEQ_PETSC@)
set(BUILD_SHARED_LIBS @BUILD_SHARED_LIBS@)
set(CMAKE_BUILD_TYPE @CMAKE_BUILD_TYPE@)
set(AMDIS_COMPILEFLAGS "")
set(AMDIS_INCLUDE_DIRS "")
set(AMDIS_LIBRARIES "")
if (AMDIS_NEED_CXX11)
enable_cxx11(AMDIS_NEED_CXX11 AMDIS_COMPILEFLAGS)
if (NOT AMDIS_NEED_CXX11)
message(FATAL_ERROR "AMDiS was compiled with c++11 support, but the current compiler does not support this feature!")
endif (NOT AMDIS_NEED_CXX11)
list(APPEND AMDIS_COMPILEFLAGS "-DAMDIS_HAS_CXX11=1")
else ()
list(APPEND AMDIS_COMPILEFLAGS "-DAMDIS_HAS_CXX11=0")
endif (AMDIS_NEED_CXX11)
# try to detect the AMDiS include directory
# -------------------------------------------
find_file(_AMDIS_H AMDiS.h PATHS ${AMDIS_DIR}/../../include/amdis/)
if (_AMDIS_H)
get_filename_component(AMDIS_INCLUDE_DIR ${_AMDIS_H} PATH CACHE)
list(APPEND AMDIS_INCLUDE_DIRS ${AMDIS_INCLUDE_DIR})
else ()
message(ERROR "Could not detect the AMDiS include directory. Please set the variable AMDIS_INCLUDE_DIR to the directory containing the AMDiS headers.")
endif ()
unset(_AMDIS_H CACHE)
# MTL4 libraries
# --------------------
enable_mtl4(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
# AMDiS base libraries
# --------------------
find_library(_AMDIS_LIB amdis${POSTFIX} PATHS ${AMDIS_DIR}/../../lib/amdis/)
if (_AMDIS_LIB)
list(APPEND AMDIS_LIBRARIES optimized ${_AMDIS_LIB} debug ${_AMDIS_LIB}d)
else ()
message(ERROR "Could not detect the AMDiS${POSTFIX} library. Please set the variable _AMDIS_LIB to the AMDiS${POSTFIX} library.")
endif ()
unset(_AMDIS_LIB CACHE)
# Boost libraries
# ---------------
if (NOT BOOST_ROOT)
set(BOOST_ROOT @BOOST_ROOT@)
endif (NOT BOOST_ROOT)
if (NOT BOOST_LIBRARYDIR)
set(BOOST_LIBRARYDIR @BOOST_LIBRARYDIR@)
endif (NOT BOOST_LIBRARYDIR)
enable_boost(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
# umfpack library
# --------------------
if (AMDIS_NEED_UMFPACK)
set(AMDIS_SuiteSparse_DIR @SuiteSparse_DIR@)
set(AMDIS_UMFPACK_INCLUDE_DIR @UMFPACK_INCLUDE_DIRS@)
set(AMDIS_UMFPACK_LIB_DIR ${AMDIS_UMFPACK_INCLUDE_DIR}/../include)
enable_umfpack(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
endif (AMDIS_NEED_UMFPACK)
# amdis extensions
# ----------------
if (AMDIS_NEED_EXTENSIONS)
find_library(_EXTENSIONS_LIB amdisextensions${POSTFIX} PATHS ${AMDIS_DIR}/../../lib/amdis/)
if (_EXTENSIONS_LIB)
list(APPEND AMDIS_INCLUDE_DIRS
${AMDIS_INCLUDE_DIR}/extensions
${AMDIS_INCLUDE_DIR}/extensions/nanoflann
${AMDIS_INCLUDE_DIR}/extensions/pugixml
${AMDIS_INCLUDE_DIR}/extensions/time)
list(APPEND AMDIS_COMPILEFLAGS "-DHAVE_EXTENSIONS=1")
list(APPEND AMDIS_LIBRARIES optimized ${_EXTENSIONS_LIB} debug ${_EXTENSIONS_LIB}d)
if (AMDIS_NEED_BASE_PROBLEMS)
list(APPEND AMDIS_INCLUDE_DIRS ${AMDIS_INCLUDE_DIR}/extensions/base_problems)
endif (AMDIS_NEED_BASE_PROBLEMS)
else ()
message(FATAL_ERROR "Extensions library not found")
endif ()
unset(_EXTENSIONS_LIB CACHE)
endif (AMDIS_NEED_EXTENSIONS)
# reinit library
# --------------
if (AMDIS_NEED_REINIT)
find_library(_REINIT_LIB amdisreinit${POSTFIX} PATHS ${AMDIS_DIR}/../../lib/amdis/)
if (_REINIT_LIB)
list(APPEND AMDIS_INCLUDE_DIRS ${AMDIS_INCLUDE_DIR}/reinit)
list(APPEND AMDIS_LIBRARIES optimized ${_REINIT_LIB} debug ${_REINIT_LIB}d)
else ()
message(FATAL_ERROR "Reinit library not found")
endif ()
unset(_REINIT_LIB CACHE)
endif (AMDIS_NEED_REINIT)
# compositeFEM library
# --------------------
if (AMDIS_NEED_COMPOSITE_FEM)
find_library(_COMPOSITE_FEM_LIB amdiscompositefem${POSTFIX} PATHS ${AMDIS_DIR}/../../lib/amdis/)
if (_COMPOSITE_FEM_LIB)
list(APPEND AMDIS_INCLUDE_DIRS ${AMDIS_INCLUDE_DIR}/compositeFEM)
list(APPEND AMDIS_LIBRARIES optimized ${_COMPOSITE_FEM_LIB} debug ${_COMPOSITE_FEM_LIB}d)
else ()
message(FATAL_ERROR "CompositeFEM library not found")
endif ()
unset(_COMPOSITE_FEM_LIB CACHE)
endif (AMDIS_NEED_COMPOSITE_FEM)
# muparser library
# --------------------
find_library(_MUPARSER_LIB muparser PATHS ${AMDIS_DIR}/../../lib/amdis/)
if (_MUPARSER_LIB)
list(APPEND AMDIS_INCLUDE_DIRS ${AMDIS_INCLUDE_DIR}/muparser)
list(APPEND AMDIS_LIBRARIES ${_MUPARSER_LIB})
else ()
message(ERROR "MuParser library not found")
endif ()
unset(_MUPARSER_LIB CACHE)
# Additional libraries
# ==================================================================================================
if (AMDIS_HAS_PARALLEL_DOMAIN)
enable_mpi(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
enable_petsc(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
list(APPEND AMDIS_COMPILEFLAGS "-DHAVE_PARALLEL_DOMAIN_AMDIS=1")
endif (AMDIS_HAS_PARALLEL_DOMAIN)
# Zoltan library
# --------------
if (AMDIS_NEED_ZOLTAN)
enable_zoltan(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
endif ()
# BDDCML library
# --------------
if (AMDIS_NEED_BDDCML)
enable_bddcml(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
endif ()
# Hypre library
# --------------
if (AMDIS_NEED_HYPRE)
enable_hypre(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
endif ()
# PNG library
# --------------
if (AMDIS_NEED_PNG)
enable_png(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
endif ()
# Sequential PETSc library
# --------------
if (AMDIS_NEED_SEQ_PETSC AND NOT AMDIS_HAS_PARALLEL_DOMAIN)
enable_mpi(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
enable_petsc(AMDIS_COMPILEFLAGS AMDIS_INCLUDE_DIRS AMDIS_LIBRARIES ON)
list(APPEND COMPILEFLAGS "-DHAVE_SEQ_PETSC=1")
endif ()