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Oliver Sander authored[[Imported from SVN: r9614]]
Oliver Sander authored[[Imported from SVN: r9614]]
rodassemblertest.cc 21.44 KiB
#include <config.h>
#include <dune/grid/onedgrid.hh>
#include <dune/istl/io.hh>
#include <dune/gfe/rigidbodymotion.hh>
#include <dune/gfe/rodassembler.hh>
// Number of degrees of freedom:
// 7 (x, y, z, q_1, q_2, q_3, q_4) for a spatial rod
const int blocksize = 6;
using namespace Dune;
void infinitesimalVariation(RigidBodyMotion<double,3>& c, double eps, int i)
{
if (i<3)
c.r[i] += eps;
else {
Dune::FieldVector<double,3> axial(0);
axial[i-3] = eps;
SkewMatrix<double,3> variation(axial);
c.q = c.q.mult(Rotation<double,3>::exp(variation));
}
}
template <class GridType>
void strainFD(const std::vector<RigidBodyMotion<double,3> >& x,
double pos,
Dune::array<Dune::FieldMatrix<double,2,6>, 6>& fdStrainDerivatives,
const RodAssembler<GridType,3>& assembler)
{
assert(x.size()==2);
double eps = 1e-8;
typename GridType::template Codim<0>::EntityPointer element = assembler.grid_->template leafbegin<0>();
// ///////////////////////////////////////////////////////////
// Compute gradient by finite-difference approximation
// ///////////////////////////////////////////////////////////
std::vector<RigidBodyMotion<double,3> > forwardSolution = x;
std::vector<RigidBodyMotion<double,3> > backwardSolution = x;
for (size_t i=0; i<x.size(); i++) {
Dune::FieldVector<double,6> fdGradient;
for (int j=0; j<6; j++) {
infinitesimalVariation(forwardSolution[i], eps, j);
infinitesimalVariation(backwardSolution[i], -eps, j);
// fdGradient[j] = (assembler.computeEnergy(forwardSolution) - assembler.computeEnergy(backwardSolution))
// / (2*eps);
Dune::FieldVector<double,6> strain;
strain = assembler.getStrain(forwardSolution, element, pos);
strain -= assembler.getStrain(backwardSolution, element, pos);
strain /= 2*eps;
for (int m=0; m<6; m++)
fdStrainDerivatives[m][i][j] = strain[m];
forwardSolution[i] = x[i];
backwardSolution[i] = x[i];
}
}
}
template <class GridType>
void strain2ndOrderFD(const std::vector<RigidBodyMotion<double,3> >& x,
double pos,
Dune::array<Dune::Matrix<Dune::FieldMatrix<double,6,6> >, 3>& translationDer,
Dune::array<Dune::Matrix<Dune::FieldMatrix<double,3,3> >, 3>& rotationDer,
const RodAssembler<GridType,3>& assembler)
{
assert(x.size()==2);
double eps = 1e-3;
typename GridType::template Codim<0>::EntityPointer element = assembler.grid_->template leafbegin<0>();
for (int m=0; m<3; m++) {
translationDer[m].setSize(2,2);
translationDer[m] = 0;
rotationDer[m].setSize(2,2);
rotationDer[m] = 0;
}
// ///////////////////////////////////////////////////////////
// Compute gradient by finite-difference approximation
// ///////////////////////////////////////////////////////////
std::vector<RigidBodyMotion<double,3> > forwardSolution = x;
std::vector<RigidBodyMotion<double,3> > backwardSolution = x;
std::vector<RigidBodyMotion<double,3> > forwardForwardSolution = x;
std::vector<RigidBodyMotion<double,3> > forwardBackwardSolution = x;
std::vector<RigidBodyMotion<double,3> > backwardForwardSolution = x;
std::vector<RigidBodyMotion<double,3> > backwardBackwardSolution = x;
for (int i=0; i<2; i++) {
for (int j=0; j<3; j++) {
for (int k=0; k<2; k++) {
for (int l=0; l<3; l++) {
if (i==k && j==l) {
infinitesimalVariation(forwardSolution[i], eps, j+3);
infinitesimalVariation(backwardSolution[i], -eps, j+3);
// Second derivative
// fdHessian[j][k] = (assembler.computeEnergy(forwardSolution)
// - 2*assembler.computeEnergy(x)
// + assembler.computeEnergy(backwardSolution)) / (eps*eps);
Dune::FieldVector<double,6> strain;
strain = assembler.getStrain(forwardSolution, element, pos);
strain += assembler.getStrain(backwardSolution, element, pos);
strain.axpy(-2, assembler.getStrain(x, element, pos));
strain /= eps*eps;
for (int m=0; m<3; m++)
rotationDer[m][i][k][j][l] = strain[3+m];
forwardSolution = x;
backwardSolution = x;
} else {
infinitesimalVariation(forwardForwardSolution[i], eps, j+3);
infinitesimalVariation(forwardForwardSolution[k], eps, l+3);
infinitesimalVariation(forwardBackwardSolution[i], eps, j+3); infinitesimalVariation(forwardBackwardSolution[k], -eps, l+3);
infinitesimalVariation(backwardForwardSolution[i], -eps, j+3);
infinitesimalVariation(backwardForwardSolution[k], eps, l+3);
infinitesimalVariation(backwardBackwardSolution[i],-eps, j+3);
infinitesimalVariation(backwardBackwardSolution[k],-eps, l+3);
// fdHessian[j][k] = (assembler.computeEnergy(forwardForwardSolution)
// + assembler.computeEnergy(backwardBackwardSolution)
// - assembler.computeEnergy(forwardBackwardSolution)
// - assembler.computeEnergy(backwardForwardSolution)) / (4*eps*eps);
Dune::FieldVector<double,6> strain;
strain = assembler.getStrain(forwardForwardSolution, element, pos);
strain += assembler.getStrain(backwardBackwardSolution, element, pos);
strain -= assembler.getStrain(forwardBackwardSolution, element, pos);
strain -= assembler.getStrain(backwardForwardSolution, element, pos);
strain /= 4*eps*eps;
for (int m=0; m<3; m++)
rotationDer[m][i][k][j][l] = strain[3+m];
forwardForwardSolution = x;
forwardBackwardSolution = x;
backwardForwardSolution = x;
backwardBackwardSolution = x;
}
}
}
}
}
}
template <class GridType>
void strain2ndOrderFD2(const std::vector<RigidBodyMotion<double,3> >& x,
double pos,
Dune::FieldVector<double,1> shapeGrad[2],
Dune::FieldVector<double,1> shapeFunction[2],
Dune::array<Dune::Matrix<Dune::FieldMatrix<double,6,6> >, 3>& translationDer,
Dune::array<Dune::Matrix<Dune::FieldMatrix<double,3,3> >, 3>& rotationDer,
const RodAssembler<GridType,3>& assembler)
{
assert(x.size()==2);
double eps = 1e-3;
for (int m=0; m<3; m++) {
translationDer[m].setSize(2,2);
translationDer[m] = 0;
rotationDer[m].setSize(2,2);
rotationDer[m] = 0;
}
// ///////////////////////////////////////////////////////////
// Compute gradient by finite-difference approximation
// ///////////////////////////////////////////////////////////
std::vector<RigidBodyMotion<double,3> > forwardSolution = x;
std::vector<RigidBodyMotion<double,3> > backwardSolution = x;
for (int k=0; k<2; k++) {
for (int l=0; l<3; l++) {
infinitesimalVariation(forwardSolution[k], eps, l+3);
infinitesimalVariation(backwardSolution[k], -eps, l+3);
Dune::array<Dune::FieldMatrix<double,2,6>, 6> forwardStrainDer;
assembler.strainDerivative(forwardSolution, pos, shapeGrad, shapeFunction, forwardStrainDer);
Dune::array<Dune::FieldMatrix<double,2,6>, 6> backwardStrainDer;
assembler.strainDerivative(backwardSolution, pos, shapeGrad, shapeFunction, backwardStrainDer);
for (int i=0; i<2; i++) {
for (int j=0; j<3; j++) {
for (int m=0; m<3; m++) {
rotationDer[m][i][k][j][l] = (forwardStrainDer[m][i][j]-backwardStrainDer[m][i][j]) / (2*eps);
}
}
}
forwardSolution = x;
backwardSolution = x;
}
}
}
template <class GridType>
void expHessianFD()
{
using namespace Dune;
double eps = 1e-3;
// ///////////////////////////////////////////////////////////
// Compute gradient by finite-difference approximation
// ///////////////////////////////////////////////////////////
SkewMatrix<double,3> forward;
SkewMatrix<double,3> backward;
SkewMatrix<double,3> forwardForward;
SkewMatrix<double,3> forwardBackward;
SkewMatrix<double,3> backwardForward;
SkewMatrix<double,3> backwardBackward;
for (int i=0; i<3; i++) {
for (int j=0; j<3; j++) {
Quaternion<double> hessian;
if (i==j) {
forward = backward = 0;
forward.axial()[i] += eps;
backward.axial()[i] -= eps;
// Second derivative
// fdHessian[j][k] = (assembler.computeEnergy(forward)
// - 2*assembler.computeEnergy(x)
// + assembler.computeEnergy(backward)) / (eps*eps);
hessian = Rotation<double,3>::exp(forward);
hessian += Rotation<double,3>::exp(backward);
SkewMatrix<double,3> zero(0); hessian.axpy(-2, Rotation<double,3>::exp(zero));
hessian /= eps*eps;
} else {
forwardForward = forwardBackward = 0;
backwardForward = backwardBackward = 0;
forwardForward.axial()[i] += eps;
forwardForward.axial()[j] += eps;
forwardBackward.axial()[i] += eps;
forwardBackward.axial()[j] -= eps;
backwardForward.axial()[i] -= eps;
backwardForward.axial()[j] += eps;
backwardBackward.axial()[i] -= eps;
backwardBackward.axial()[j] -= eps;
hessian = Rotation<double,3>::exp(forwardForward);
hessian += Rotation<double,3>::exp(backwardBackward);
hessian -= Rotation<double,3>::exp(forwardBackward);
hessian -= Rotation<double,3>::exp(backwardForward);
hessian /= 4*eps*eps;
}
printf("i: %d, j: %d ", i, j);
std::cout << hessian << std::endl;
}
}
}
template <class GridType>
void gradientFDCheck(const std::vector<RigidBodyMotion<double,3> >& x,
const Dune::BlockVector<Dune::FieldVector<double,6> >& gradient,
const RodAssembler<GridType,3>& assembler)
{
#ifndef ABORT_ON_ERROR
static int gradientError = 0;
double maxError = -1;
#endif
double eps = 1e-6;
// ///////////////////////////////////////////////////////////
// Compute gradient by finite-difference approximation
// ///////////////////////////////////////////////////////////
std::vector<RigidBodyMotion<double,3> > forwardSolution = x;
std::vector<RigidBodyMotion<double,3> > backwardSolution = x;
for (size_t i=0; i<x.size(); i++) {
Dune::FieldVector<double,6> fdGradient;
for (int j=0; j<6; j++) {
infinitesimalVariation(forwardSolution[i], eps, j);
infinitesimalVariation(backwardSolution[i], -eps, j);
fdGradient[j] = (assembler.computeEnergy(forwardSolution) - assembler.computeEnergy(backwardSolution))
/ (2*eps);
forwardSolution[i] = x[i];
backwardSolution[i] = x[i];
}
if ( (fdGradient-gradient[i]).two_norm() > 1e-6 ) {#ifdef ABORT_ON_ERROR
std::cout << "Differing gradients at " << i
<< "! (" << (fdGradient-gradient[i]).two_norm() / gradient[i].two_norm()
<< ") Analytical: " << gradient[i] << ", fd: " << fdGradient << std::endl;
//std::cout << "Current configuration " << std::endl;
for (size_t j=0; j<x.size(); j++)
std::cout << x[j] << std::endl;
//abort();
#else
gradientError++;
maxError = std::max(maxError, (fdGradient-gradient[i]).two_norm());
#endif
}
}
#ifndef ABORT_ON_ERROR
std::cout << gradientError << " errors in the gradient corrected (max: " << maxError << ")!" << std::endl;
#endif
}
template <class GridType>
void hessianFDCheck(const std::vector<RigidBodyMotion<double,3> >& x,
const Dune::BCRSMatrix<Dune::FieldMatrix<double,6,6> >& hessian,
const RodAssembler<GridType,3>& assembler)
{
#ifndef ABORT_ON_ERROR
static int hessianError = 0;
#endif
double eps = 1e-2;
typedef typename Dune::BCRSMatrix<Dune::FieldMatrix<double,6,6> >::row_type::const_iterator ColumnIterator;
// ///////////////////////////////////////////////////////////
// Compute gradient by finite-difference approximation
// ///////////////////////////////////////////////////////////
std::vector<RigidBodyMotion<double,3> > forwardSolution = x;
std::vector<RigidBodyMotion<double,3> > backwardSolution = x;
std::vector<RigidBodyMotion<double,3> > forwardForwardSolution = x;
std::vector<RigidBodyMotion<double,3> > forwardBackwardSolution = x;
std::vector<RigidBodyMotion<double,3> > backwardForwardSolution = x;
std::vector<RigidBodyMotion<double,3> > backwardBackwardSolution = x;
// ///////////////////////////////////////////////////////////////
// Loop over all blocks of the outer matrix
// ///////////////////////////////////////////////////////////////
for (size_t i=0; i<hessian.N(); i++) {
ColumnIterator cIt = hessian[i].begin();
ColumnIterator cEndIt = hessian[i].end();
for (; cIt!=cEndIt; ++cIt) {
// ////////////////////////////////////////////////////////////////////////////
// Compute a finite-difference approximation of this hessian matrix block
// ////////////////////////////////////////////////////////////////////////////
Dune::FieldMatrix<double,6,6> fdHessian;
for (int j=0; j<6; j++) {
for (int k=0; k<6; k++) {
if (i==cIt.index() && j==k) {
infinitesimalVariation(forwardSolution[i], eps, j); infinitesimalVariation(backwardSolution[i], -eps, j);
// Second derivative
fdHessian[j][k] = (assembler.computeEnergy(forwardSolution)
+ assembler.computeEnergy(backwardSolution)
- 2*assembler.computeEnergy(x)
) / (eps*eps);
forwardSolution[i] = x[i];
backwardSolution[i] = x[i];
} else {
infinitesimalVariation(forwardForwardSolution[i], eps, j);
infinitesimalVariation(forwardForwardSolution[cIt.index()], eps, k);
infinitesimalVariation(forwardBackwardSolution[i], eps, j);
infinitesimalVariation(forwardBackwardSolution[cIt.index()], -eps, k);
infinitesimalVariation(backwardForwardSolution[i], -eps, j);
infinitesimalVariation(backwardForwardSolution[cIt.index()], eps, k);
infinitesimalVariation(backwardBackwardSolution[i], -eps, j);
infinitesimalVariation(backwardBackwardSolution[cIt.index()],-eps, k);
fdHessian[j][k] = (assembler.computeEnergy(forwardForwardSolution)
+ assembler.computeEnergy(backwardBackwardSolution)
- assembler.computeEnergy(forwardBackwardSolution)
- assembler.computeEnergy(backwardForwardSolution)) / (4*eps*eps);
forwardForwardSolution[i] = x[i];
forwardForwardSolution[cIt.index()] = x[cIt.index()];
forwardBackwardSolution[i] = x[i];
forwardBackwardSolution[cIt.index()] = x[cIt.index()];
backwardForwardSolution[i] = x[i];
backwardForwardSolution[cIt.index()] = x[cIt.index()];
backwardBackwardSolution[i] = x[i];
backwardBackwardSolution[cIt.index()] = x[cIt.index()];
}
}
}
//exit(0);
// /////////////////////////////////////////////////////////////////////////////
// Compare analytical and fd Hessians
// /////////////////////////////////////////////////////////////////////////////
Dune::FieldMatrix<double,6,6> diff = fdHessian;
diff -= *cIt;
if ( diff.frobenius_norm() > 1e-5 ) {
#ifdef ABORT_ON_ERROR
std::cout << "Differing hessians at [(" << i << ", "<< cIt.index() << ")]!" << std::endl
<< "Analytical: " << std::endl << *cIt << std::endl
<< "fd: " << std::endl << fdHessian << std::endl;
abort();
#else
hessianError++;
#endif
}
}
}
#ifndef ABORT_ON_ERROR
std::cout << hessianError << " errors in the Hessian corrected!" << std::endl;
#endif
}
int main (int argc, char *argv[]) try
{
typedef std::vector<RigidBodyMotion<double,3> > SolutionType;
// ///////////////////////////////////////
// Create the grid
// ///////////////////////////////////////
typedef OneDGrid GridType;
GridType grid(1, 0, 1);
SolutionType x(grid.size(1));
// //////////////////////////
// Initial solution
// //////////////////////////
FieldVector<double,3> xAxis(0);
xAxis[0] = 1;
FieldVector<double,3> zAxis(0);
zAxis[2] = 1;
for (size_t i=0; i<x.size(); i++) {
x[i].r[0] = 0; // x
x[i].r[1] = 0; // y
x[i].r[2] = double(i)/(x.size()-1); // z
//x[i].r[2] = i+5;
x[i].q = Quaternion<double>::identity();
//x[i].q = Quaternion<double>(zAxis, M_PI/2 * double(i)/(x.size()-1));
}
//x.back().r[1] = 0.1;
//x.back().r[2] = 2;
//x.back().q = Quaternion<double>(zAxis, M_PI/4);
std::cout << "Left boundary orientation:" << std::endl;
std::cout << "director 0: " << x[0].q.director(0) << std::endl;
std::cout << "director 1: " << x[0].q.director(1) << std::endl;
std::cout << "director 2: " << x[0].q.director(2) << std::endl;
std::cout << std::endl;
std::cout << "Right boundary orientation:" << std::endl;
std::cout << "director 0: " << x[x.size()-1].q.director(0) << std::endl;
std::cout << "director 1: " << x[x.size()-1].q.director(1) << std::endl;
std::cout << "director 2: " << x[x.size()-1].q.director(2) << std::endl;
// exit(0);
//x[0].r[2] = -1;
// ///////////////////////////////////////////
// Create a solver for the rod problem
// ///////////////////////////////////////////
RodLocalStiffness<GridType::LeafGridView,double> localStiffness(grid.leafGridView(),
0.01, 0.0001, 0.0001, 2.5e5, 0.3);
RodAssembler<GridType::LeafGridView,3> rodAssembler(grid.leafGridView(), &localStiffness);
std::cout << "Energy: " << rodAssembler.computeEnergy(x) << std::endl;
double pos = (argc==2) ? atof(argv[1]) : 0.5;
FieldVector<double,1> shapeGrad[2];
shapeGrad[0] = -1;
shapeGrad[1] = 1;
FieldVector<double,1> shapeFunction[2];
shapeFunction[0] = 1-pos;
shapeFunction[1] = pos;
exit(0); BlockVector<FieldVector<double,6> > rhs(x.size());
BCRSMatrix<FieldMatrix<double,6,6> > hessianMatrix;
MatrixIndexSet indices(grid.size(1), grid.size(1));
rodAssembler.getNeighborsPerVertex(indices);
indices.exportIdx(hessianMatrix);
rodAssembler.assembleGradient(x, rhs);
rodAssembler.assembleMatrix(x, hessianMatrix);
gradientFDCheck(x, rhs, rodAssembler);
hessianFDCheck(x, hessianMatrix, rodAssembler);
// //////////////////////////////
} catch (Exception e) {
std::cout << e << std::endl;
}