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Backofen, Rainer
amdis
Commits
cdb9e4ad
Commit
cdb9e4ad
authored
Sep 30, 2009
by
Thomas Witkowski
Browse files
Fixed incorrect MPI usage in parmetis partitioner.
parent
2a0239ea
Changes
3
Hide whitespace changes
Inline
Side-by-side
AMDiS/libtool
View file @
cdb9e4ad
...
...
@@ -44,7 +44,7 @@ available_tags=" CXX F77"
# ### BEGIN LIBTOOL CONFIG
# Libtool was configured on host
deimos103
:
# Libtool was configured on host
mars
:
# Shell to use when invoking shell scripts.
SHELL
=
"/bin/sh"
...
...
@@ -66,12 +66,12 @@ fast_install=yes
# The host system.
host_alias
=
host
=
x86_
64-unknown-linux-gnu
host
=
ia
64-unknown-linux-gnu
host_os
=
linux-gnu
# The build system.
build_alias
=
build
=
x86_
64-unknown-linux-gnu
build
=
ia
64-unknown-linux-gnu
build_os
=
linux-gnu
# An echo program that does not interpret backslashes.
...
...
@@ -82,13 +82,13 @@ AR="ar"
AR_FLAGS
=
"cru"
# A C compiler.
LTCC
=
"
/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpi
cc"
LTCC
=
"
g
cc"
# LTCC compiler flags.
LTCFLAGS
=
"-g -O2"
# A language-specific compiler.
CC
=
"
/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpi
cc"
CC
=
"
g
cc"
# Is the compiler the GNU C compiler?
with_gcc
=
yes
...
...
@@ -97,7 +97,7 @@ with_gcc=yes
EGREP
=
"grep -E"
# The linker used to build libraries.
LD
=
"/usr/
x86_
64-suse-linux/bin/ld
-m elf_x86_64
"
LD
=
"/usr/
ia
64-suse-linux/bin/ld"
# Whether we need hard or soft links.
LN_S
=
"ln -s"
...
...
@@ -147,7 +147,7 @@ pic_flag=" -fPIC -DPIC"
pic_mode
=
default
# What is the maximum length of a command?
max_cmd_len
=
32768
max_cmd_len
=
131072
# Does compiler simultaneously support -c and -o options?
compiler_c_o
=
"yes"
...
...
@@ -171,7 +171,7 @@ dlopen_self=unknown
dlopen_self_static
=
unknown
# Compiler flag to prevent dynamic linking.
link_static_flag
=
""
link_static_flag
=
"
-static
"
# Compiler flag to turn off builtin functions.
no_builtin_flag
=
" -fno-builtin"
...
...
@@ -269,10 +269,10 @@ finish_eval=""
global_symbol_pipe
=
"sed -n -e 's/^.*[ ]
\\
([ABCDGIRSTW][ABCDGIRSTW]*
\\
)[ ][ ]*
\\
([_A-Za-z][_A-Za-z0-9]*
\\
)
\$
/
\\
1
\\
2
\\
2/p'"
# Transform the output of nm in a proper C declaration
global_symbol_to_cdecl
=
"sed -n -e 's/^
.
.*
\\
(.*
\\
)
\$
/extern int
\\
1;/p'"
global_symbol_to_cdecl
=
"sed -n -e 's/^
T
.*
\\
(.*
\\
)
\$
/extern int
\\
1();/p' -e 's/^[ABCDGIRSTW]* .*
\\
(.*
\\
)
\$
/extern char
\\
1;/p'"
# Transform the output of nm in a C name address pair
global_symbol_to_c_name_address
=
"sed -n -e 's/^:
\\
([^ ]*
\\
)
\$
/ {
\\\"\\
1
\\\"
, (lt_ptr) 0},/p' -e 's/^[BCD
E
GRST
]
\\
([^ ]*
\\
)
\\
([^ ]*
\\
)
\$
/ {
\"\\
2
\"
, (lt_ptr)
\\
&
\\
2},/p'"
global_symbol_to_c_name_address
=
"sed -n -e 's/^:
\\
([^ ]*
\\
)
\$
/ {
\\\"\\
1
\\\"
, (lt_ptr) 0},/p' -e 's/^[
A
BCDG
I
RST
W]*
\\
([^ ]*
\\
)
\\
([^ ]*
\\
)
\$
/ {
\"\\
2
\"
, (lt_ptr)
\\
&
\\
2},/p'"
# This is the shared library runtime path variable.
runpath_var
=
LD_RUN_PATH
...
...
@@ -325,10 +325,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs
=
unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec
=
" /usr/lib
64
/gcc/
x86_
64-suse-linux/4.1.2/ /usr/lib/gcc/
x86_
64-suse-linux/4.1.2/ /usr/lib
64
/gcc/
x86_
64-suse-linux/4.1.2/../../../../
x86_
64-suse-linux/lib/
x86_
64-suse-linux/4.1.2/ /usr/lib
64
/gcc/
x86_
64-suse-linux/4.1.2/../../../../
x86_
64-suse-linux/lib/
../lib64/
/usr/lib
64
/gcc/
x86_
64-suse-linux/4.1.2/../../../
x86_
64-suse-linux/4.1.2/ /usr/lib
64
/gcc/
x86_
64-suse-linux/4.1.2/../../../
../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_
64-suse-linux/4.1.2/
../../../ /lib/
/usr/lib/"
sys_lib_search_path_spec
=
" /usr/lib/gcc/
ia
64-suse-linux/4.1.2/ /usr/lib/gcc/
ia
64-suse-linux/4.1.2/ /usr/lib/gcc/
ia
64-suse-linux/4.1.2/../../../../
ia
64-suse-linux/lib/
ia
64-suse-linux/4.1.2/ /usr/lib/gcc/
ia
64-suse-linux/4.1.2/../../../../
ia
64-suse-linux/lib/ /usr/lib/gcc/
ia
64-suse-linux/4.1.2/../../../
ia
64-suse-linux/4.1.2/ /usr/lib/gcc/
ia
64-suse-linux/4.1.2/../../../
/lib/ia64-suse-linux/4.1.2/ /lib/ /usr/lib/ia
64-suse-linux/4.1.2/ /usr/lib/"
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec
=
"/lib /usr/lib /usr/X11R6/lib
64
/Xaw3d /usr/X11R6/lib
64
/usr/
X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/p
gi/
l
in
ux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2
/lib
so
"
sys_lib_dlsearch_path_spec
=
"/lib /usr/lib /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/
ia64-suse-linux/lib /usr/local/lib /opt/kde3/lib /opt/gnome/lib /work/licsoft/lsf/6.2/linux2.6-glibc2.4-sn-ipf/lib /opt/sgi-dapl/lib /opt/tivoli/tsm/client/api/bin /usr/lib/sgi/intel9/ /usr/lib/s
gi/in
tel8/ /usr/lib/sgi/intel7/ /usr/lib/sysadm
/lib "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path
=
""
...
...
@@ -6760,7 +6760,7 @@ build_old_libs=`case $build_libtool_libs in yes) $echo no;; *) $echo yes;; esac`
# End:
# ### BEGIN LIBTOOL TAG CONFIG: CXX
# Libtool was configured on host
deimos103
:
# Libtool was configured on host
mars
:
# Shell to use when invoking shell scripts.
SHELL
=
"/bin/sh"
...
...
@@ -6782,12 +6782,12 @@ fast_install=yes
# The host system.
host_alias
=
host
=
x86_
64-unknown-linux-gnu
host
=
ia
64-unknown-linux-gnu
host_os
=
linux-gnu
# The build system.
build_alias
=
build
=
x86_
64-unknown-linux-gnu
build
=
ia
64-unknown-linux-gnu
build_os
=
linux-gnu
# An echo program that does not interpret backslashes.
...
...
@@ -6798,13 +6798,13 @@ AR="ar"
AR_FLAGS
=
"cru"
# A C compiler.
LTCC
=
"
/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpi
cc"
LTCC
=
"
g
cc"
# LTCC compiler flags.
LTCFLAGS
=
"-g -O2"
# A language-specific compiler.
CC
=
"
/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpiCC
"
CC
=
"
g++
"
# Is the compiler the GNU C compiler?
with_gcc
=
yes
...
...
@@ -6813,7 +6813,7 @@ with_gcc=yes
EGREP
=
"grep -E"
# The linker used to build libraries.
LD
=
"/usr/
x86_
64-suse-linux/bin/ld
-m elf_x86_64
"
LD
=
"/usr/
ia
64-suse-linux/bin/ld"
# Whether we need hard or soft links.
LN_S
=
"ln -s"
...
...
@@ -6863,7 +6863,7 @@ pic_flag=" -fPIC -DPIC"
pic_mode
=
default
# What is the maximum length of a command?
max_cmd_len
=
32768
max_cmd_len
=
131072
# Does compiler simultaneously support -c and -o options?
compiler_c_o
=
"yes"
...
...
@@ -6887,7 +6887,7 @@ dlopen_self=unknown
dlopen_self_static
=
unknown
# Compiler flag to prevent dynamic linking.
link_static_flag
=
""
link_static_flag
=
"
-static
"
# Compiler flag to turn off builtin functions.
no_builtin_flag
=
" -fno-builtin"
...
...
@@ -6942,11 +6942,11 @@ striplib="strip --strip-unneeded"
# Dependencies to place before the objects being linked to create a
# shared library.
predep_objects
=
"/usr/lib
64
/gcc/
x86_
64-suse-linux/4.1.2/../../../
../lib64/
crti.o /usr/lib
64
/gcc/
x86_
64-suse-linux/4.1.2/crtbeginS.o"
predep_objects
=
"/usr/lib/gcc/
ia
64-suse-linux/4.1.2/../../../crti.o /usr/lib/gcc/
ia
64-suse-linux/4.1.2/crtbeginS.o"
# Dependencies to place after the objects being linked to create a
# shared library.
postdep_objects
=
"/usr/lib
64
/gcc/
x86_
64-suse-linux/4.1.2/crtendS.o /usr/lib
64
/gcc/
x86_
64-suse-linux/4.1.2/../../../
../lib64/
crtn.o"
postdep_objects
=
"/usr/lib/gcc/
ia
64-suse-linux/4.1.2/crtendS.o /usr/lib/gcc/
ia
64-suse-linux/4.1.2/../../../crtn.o"
# Dependencies to place before the objects being linked to create a
# shared library.
...
...
@@ -6954,11 +6954,11 @@ predeps=""
# Dependencies to place after the objects being linked to create a
# shared library.
postdeps
=
"
-lmpi_cxx -lmpi -lopen-rte -lopen-pal -libverbs -lrt -lnuma -ldl -lnsl -lutil -ldl
-lstdc++ -lm -lgcc_s -l
pthrea
d -lc -lgcc_s"
postdeps
=
"-lstdc++ -lm -lgcc_s -l
unwin
d -lc -lgcc_s
-lunwind
"
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path
=
"-L/usr/lib
64 -L/licsoft/libraries/openmpi/1.2.6/64bit/lib -L/usr/lib64/gcc/x86_
64-suse-linux/4.1.2 -L/usr/lib
64
/gcc/
x86_
64-suse-linux/4.1.2
/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib64/gcc/x86_
64-suse-linux/4.1.2/../../../../
x86_
64-suse-linux/lib -L/usr/lib
64
/gcc/
x86_
64-suse-linux/4.1.2/../../.."
compiler_lib_search_path
=
"-L/usr/lib
/gcc/ia
64-suse-linux/4.1.2 -L/usr/lib/gcc/
ia
64-suse-linux/4.1.2
-L/usr/lib/gcc/ia
64-suse-linux/4.1.2/../../../../
ia
64-suse-linux/lib -L/usr/lib/gcc/
ia
64-suse-linux/4.1.2/../../.."
# Method to check whether dependent libraries are shared objects.
deplibs_check_method
=
"pass_all"
...
...
@@ -6982,10 +6982,10 @@ finish_eval=""
global_symbol_pipe
=
"sed -n -e 's/^.*[ ]
\\
([ABCDGIRSTW][ABCDGIRSTW]*
\\
)[ ][ ]*
\\
([_A-Za-z][_A-Za-z0-9]*
\\
)
\$
/
\\
1
\\
2
\\
2/p'"
# Transform the output of nm in a proper C declaration
global_symbol_to_cdecl
=
"sed -n -e 's/^
.
.*
\\
(.*
\\
)
\$
/extern int
\\
1;/p'"
global_symbol_to_cdecl
=
"sed -n -e 's/^
T
.*
\\
(.*
\\
)
\$
/extern int
\\
1();/p' -e 's/^[ABCDGIRSTW]* .*
\\
(.*
\\
)
\$
/extern char
\\
1;/p'"
# Transform the output of nm in a C name address pair
global_symbol_to_c_name_address
=
"sed -n -e 's/^:
\\
([^ ]*
\\
)
\$
/ {
\\\"\\
1
\\\"
, (lt_ptr) 0},/p' -e 's/^[BCD
E
GRST
]
\\
([^ ]*
\\
)
\\
([^ ]*
\\
)
\$
/ {
\"\\
2
\"
, (lt_ptr)
\\
&
\\
2},/p'"
global_symbol_to_c_name_address
=
"sed -n -e 's/^:
\\
([^ ]*
\\
)
\$
/ {
\\\"\\
1
\\\"
, (lt_ptr) 0},/p' -e 's/^[
A
BCDG
I
RST
W]*
\\
([^ ]*
\\
)
\\
([^ ]*
\\
)
\$
/ {
\"\\
2
\"
, (lt_ptr)
\\
&
\\
2},/p'"
# This is the shared library runtime path variable.
runpath_var
=
LD_RUN_PATH
...
...
@@ -7038,10 +7038,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs
=
unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec
=
" /usr/lib
64
/gcc/
x86_
64-suse-linux/4.1.2/ /usr/lib/gcc/
x86_
64-suse-linux/4.1.2/ /usr/lib
64
/gcc/
x86_
64-suse-linux/4.1.2/../../../../
x86_
64-suse-linux/lib/
x86_
64-suse-linux/4.1.2/ /usr/lib
64
/gcc/
x86_
64-suse-linux/4.1.2/../../../../
x86_
64-suse-linux/lib/
../lib64/
/usr/lib
64
/gcc/
x86_
64-suse-linux/4.1.2/../../../
x86_
64-suse-linux/4.1.2/ /usr/lib
64
/gcc/
x86_
64-suse-linux/4.1.2/../../../
../lib64/ /lib/x86_64-suse-linux/4.1.2/ /lib/../lib64/ /usr/lib/x86_64-suse-linux/4.1.2/ /usr/lib/../lib64/ /usr/lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/lib/ /usr/lib64/gcc/x86_
64-suse-linux/4.1.2/
../../../ /lib/
/usr/lib/"
sys_lib_search_path_spec
=
" /usr/lib/gcc/
ia
64-suse-linux/4.1.2/ /usr/lib/gcc/
ia
64-suse-linux/4.1.2/ /usr/lib/gcc/
ia
64-suse-linux/4.1.2/../../../../
ia
64-suse-linux/lib/
ia
64-suse-linux/4.1.2/ /usr/lib/gcc/
ia
64-suse-linux/4.1.2/../../../../
ia
64-suse-linux/lib/ /usr/lib/gcc/
ia
64-suse-linux/4.1.2/../../../
ia
64-suse-linux/4.1.2/ /usr/lib/gcc/
ia
64-suse-linux/4.1.2/../../../
/lib/ia64-suse-linux/4.1.2/ /lib/ /usr/lib/ia
64-suse-linux/4.1.2/ /usr/lib/"
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec
=
"/lib /usr/lib /usr/X11R6/lib
64
/Xaw3d /usr/X11R6/lib
64
/usr/
X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/p
gi/
l
in
ux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2
/lib
so
"
sys_lib_dlsearch_path_spec
=
"/lib /usr/lib /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/
ia64-suse-linux/lib /usr/local/lib /opt/kde3/lib /opt/gnome/lib /work/licsoft/lsf/6.2/linux2.6-glibc2.4-sn-ipf/lib /opt/sgi-dapl/lib /opt/tivoli/tsm/client/api/bin /usr/lib/sgi/intel9/ /usr/lib/s
gi/in
tel8/ /usr/lib/sgi/intel7/ /usr/lib/sysadm
/lib "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path
=
""
...
...
@@ -7065,7 +7065,7 @@ include_expsyms=""
# ### BEGIN LIBTOOL TAG CONFIG: F77
# Libtool was configured on host
deimos103
:
# Libtool was configured on host
mars
:
# Shell to use when invoking shell scripts.
SHELL
=
"/bin/sh"
...
...
@@ -7087,12 +7087,12 @@ fast_install=yes
# The host system.
host_alias
=
host
=
x86_
64-unknown-linux-gnu
host
=
ia
64-unknown-linux-gnu
host_os
=
linux-gnu
# The build system.
build_alias
=
build
=
x86_
64-unknown-linux-gnu
build
=
ia
64-unknown-linux-gnu
build_os
=
linux-gnu
# An echo program that does not interpret backslashes.
...
...
@@ -7103,22 +7103,22 @@ AR="ar"
AR_FLAGS
=
"cru"
# A C compiler.
LTCC
=
"
/licsoft/libraries/openmpi/1.2.6/64bit/bin/mpi
cc"
LTCC
=
"
g
cc"
# LTCC compiler flags.
LTCFLAGS
=
"-g -O2"
# A language-specific compiler.
CC
=
"g
77
"
CC
=
"g
fortran
"
# Is the compiler the GNU C compiler?
with_gcc
=
with_gcc
=
yes
# An ERE matcher.
EGREP
=
"grep -E"
# The linker used to build libraries.
LD
=
"/usr/
x86_
64-suse-linux/bin/ld
-m elf_x86_64
"
LD
=
"/usr/
ia
64-suse-linux/bin/ld"
# Whether we need hard or soft links.
LN_S
=
"ln -s"
...
...
@@ -7168,7 +7168,7 @@ pic_flag=" -fPIC"
pic_mode
=
default
# What is the maximum length of a command?
max_cmd_len
=
32768
max_cmd_len
=
131072
# Does compiler simultaneously support -c and -o options?
compiler_c_o
=
"yes"
...
...
@@ -7290,10 +7290,10 @@ finish_eval=""
global_symbol_pipe
=
"sed -n -e 's/^.*[ ]
\\
([ABCDGIRSTW][ABCDGIRSTW]*
\\
)[ ][ ]*
\\
([_A-Za-z][_A-Za-z0-9]*
\\
)
\$
/
\\
1
\\
2
\\
2/p'"
# Transform the output of nm in a proper C declaration
global_symbol_to_cdecl
=
"sed -n -e 's/^
.
.*
\\
(.*
\\
)
\$
/extern int
\\
1;/p'"
global_symbol_to_cdecl
=
"sed -n -e 's/^
T
.*
\\
(.*
\\
)
\$
/extern int
\\
1();/p' -e 's/^[ABCDGIRSTW]* .*
\\
(.*
\\
)
\$
/extern char
\\
1;/p'"
# Transform the output of nm in a C name address pair
global_symbol_to_c_name_address
=
"sed -n -e 's/^:
\\
([^ ]*
\\
)
\$
/ {
\\\"\\
1
\\\"
, (lt_ptr) 0},/p' -e 's/^[BCD
E
GRST
]
\\
([^ ]*
\\
)
\\
([^ ]*
\\
)
\$
/ {
\"\\
2
\"
, (lt_ptr)
\\
&
\\
2},/p'"
global_symbol_to_c_name_address
=
"sed -n -e 's/^:
\\
([^ ]*
\\
)
\$
/ {
\\\"\\
1
\\\"
, (lt_ptr) 0},/p' -e 's/^[
A
BCDG
I
RST
W]*
\\
([^ ]*
\\
)
\\
([^ ]*
\\
)
\$
/ {
\"\\
2
\"
, (lt_ptr)
\\
&
\\
2},/p'"
# This is the shared library runtime path variable.
runpath_var
=
LD_RUN_PATH
...
...
@@ -7346,10 +7346,10 @@ variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH GCC_EXEC_PREFIX COM
link_all_deplibs
=
unknown
# Compile-time system search path for libraries
sys_lib_search_path_spec
=
" /usr/lib
64
/gcc
-lib/x86_
64-suse-linux/
3.3.5
/ /usr/lib/gcc/
x86_
64-suse-linux/
3.3.5
/ /usr/lib
64
/gcc
-lib/x86_
64-suse-linux/
3.3.5
/../../../../
x86_
64-suse-linux/lib/
x86_
64-suse-linux/
3.3.5
/ /usr/lib
64
/gcc
-lib/x86_
64-suse-linux/
3.3.5
/../../../../
x86_
64-suse-linux/lib/ /usr/lib
64
/gcc
-lib/x86_
64-suse-linux/
3.3.5
/../../../
x86_
64-suse-linux/
3.3.5
/ /usr/lib
64
/gcc
-lib/x86_
64-suse-linux/
3.3.5
/../../../ /lib/
x86_
64-suse-linux/
3.3.5
/ /lib/ /usr/lib/
x86_
64-suse-linux/
3.3.5
/ /usr/lib/"
sys_lib_search_path_spec
=
" /usr/lib/gcc
/ia
64-suse-linux/
4.1.2
/ /usr/lib/gcc/
ia
64-suse-linux/
4.1.2
/ /usr/lib/gcc
/ia
64-suse-linux/
4.1.2
/../../../../
ia
64-suse-linux/lib/
ia
64-suse-linux/
4.1.2
/ /usr/lib/gcc
/ia
64-suse-linux/
4.1.2
/../../../../
ia
64-suse-linux/lib/ /usr/lib/gcc
/ia
64-suse-linux/
4.1.2
/../../../
ia
64-suse-linux/
4.1.2
/ /usr/lib/gcc
/ia
64-suse-linux/
4.1.2
/../../../ /lib/
ia
64-suse-linux/
4.1.2
/ /lib/ /usr/lib/
ia
64-suse-linux/
4.1.2
/ /usr/lib/"
# Run-time system search path for libraries
sys_lib_dlsearch_path_spec
=
"/lib /usr/lib /usr/X11R6/lib
64
/Xaw3d /usr/X11R6/lib
64
/usr/
X11R6/lib/Xaw3d /usr/X11R6/lib /usr/x86_64-suse-linux/lib /usr/local/lib64 /usr/local/lib /opt/kde3/lib64 /opt/kde3/lib /opt/gnome/lib64 /opt/gnome/lib /lib64 /lib /usr/lib64 /usr/lib /opt/cluster/intel/cce/9.1.042/lib /opt/cluster/intel/fce/9.1.036/lib /opt/cluster/Pathscale3.0/lib/2.9.99 /opt/cluster/Pathscale3.0/lib/2.9.99/32 /work/licsoft/compilers/p
gi/
l
in
ux86-64/6.2/lib /work/licsoft/compilers/pgi/linux86-64/6.2
/lib
so
"
sys_lib_dlsearch_path_spec
=
"/lib /usr/lib /usr/X11R6/lib/Xaw3d /usr/X11R6/lib /usr/
ia64-suse-linux/lib /usr/local/lib /opt/kde3/lib /opt/gnome/lib /work/licsoft/lsf/6.2/linux2.6-glibc2.4-sn-ipf/lib /opt/sgi-dapl/lib /opt/tivoli/tsm/client/api/bin /usr/lib/sgi/intel9/ /usr/lib/s
gi/in
tel8/ /usr/lib/sgi/intel7/ /usr/lib/sysadm
/lib "
# Fix the shell variable $srcfile for the compiler.
fix_srcfile_path
=
""
...
...
AMDiS/src/ParMetisPartitioner.cc
View file @
cdb9e4ad
#include
<queue>
#include
"ParMetisPartitioner.h"
#include
"Mesh.h"
#include
"Traverse.h"
...
...
@@ -8,11 +9,9 @@
#include
"DOFVector.h"
#include
"mpi.h"
#include
<queue>
namespace
AMDiS
{
ParMetisMesh
::
ParMetisMesh
(
Mesh
*
mesh
,
MPI
::
C
omm
*
comm
)
ParMetisMesh
::
ParMetisMesh
(
Mesh
*
mesh
,
MPI
::
Intrac
omm
*
comm
)
:
dim
(
mesh
->
getDim
()),
nElements
(
0
),
mpiComm
(
comm
)
...
...
@@ -51,11 +50,10 @@ namespace AMDiS {
elmdist
=
new
int
[
mpiSize
+
1
];
elem_p2a
=
new
int
[
nElements
];
if
(
dim
==
dow
)
{
if
(
dim
==
dow
)
xyz
=
new
float
[
nElements
*
dim
];
}
else
{
xyz
=
NULL
;
}
else
xyz
=
NULL
;
eptr
[
0
]
=
0
;
...
...
@@ -67,9 +65,8 @@ namespace AMDiS {
mpiComm
->
Allgather
(
&
nElements
,
1
,
MPI_INT
,
elmdist
+
1
,
1
,
MPI_INT
);
elmdist
[
0
]
=
0
;
for
(
int
i
=
2
;
i
<
mpiSize
+
1
;
i
++
)
{
for
(
int
i
=
2
;
i
<
mpiSize
+
1
;
i
++
)
elmdist
[
i
]
+=
elmdist
[
i
-
1
];
}
// traverse mesh and fill distributed ParMETIS data
DimVec
<
double
>
bary
(
dim
,
DEFAULT_VALUE
,
1.0
/
(
dim
+
1
));
...
...
@@ -141,7 +138,7 @@ namespace AMDiS {
}
ParMetisGraph
::
ParMetisGraph
(
ParMetisMesh
*
parMesh
,
MPI
::
C
omm
*
comm
,
MPI
::
Intrac
omm
*
comm
,
int
ncommonnodes
)
:
parMetisMesh
(
parMesh
)
{
...
...
@@ -201,11 +198,11 @@ namespace AMDiS {
new
PartitionElementData
(
element
->
getElementData
());
element
->
setElementData
(
elData
);
if
(
totalElementCounter
%
mpiSize
==
mpiRank
)
{
if
(
totalElementCounter
%
mpiSize
==
mpiRank
)
elData
->
setPartitionStatus
(
IN
);
}
else
{
else
elData
->
setPartitionStatus
(
UNDEFINED
);
}
totalElementCounter
++
;
elInfo
=
stack
.
traverseNext
(
elInfo
);
...
...
@@ -475,9 +472,8 @@ namespace AMDiS {
for
(
int
i
=
0
;
i
<
mpiSize
;
i
++
)
{
int
*
rankStart
=
rankElements
+
recvBufferOffset
[
i
];
int
*
rankEnd
=
rankStart
+
nRankElements
[
i
];
for
(
int
*
rankPtr
=
rankStart
;
rankPtr
<
rankEnd
;
++
rankPtr
)
{
for
(
int
*
rankPtr
=
rankStart
;
rankPtr
<
rankEnd
;
++
rankPtr
)
elementInPartition
[
*
rankPtr
]
=
true
;
}
}
TraverseStack
stack
;
...
...
@@ -491,11 +487,11 @@ namespace AMDiS {
if
(
partitionData
&&
partitionData
->
getLevel
()
==
0
)
{
int
amdisIndex
=
element
->
getIndex
();
if
(
elementInPartition
[
amdisIndex
])
{
if
(
elementInPartition
[
amdisIndex
])
partitionData
->
setPartitionStatus
(
IN
);
}
else
{
else
partitionData
->
setPartitionStatus
(
OUT
);
}
descendPartitionData
(
element
);
}
...
...
@@ -551,12 +547,10 @@ namespace AMDiS {
PartitionElementData
*
partitionData
=
dynamic_cast
<
PartitionElementData
*>
(
element
->
getElementData
(
PARTITION_ED
));
if
(
partitionData
)
{
if
(
partitionData
->
getLevel
()
==
0
)
{
if
(
partitionData
->
getLevel
()
==
0
)
partition
=
(
*
(
coarseVec
))[
element
->
getIndex
()];
}
if
(
element
->
isLeaf
())
{
if
(
element
->
isLeaf
())
(
*
(
fineVec
))[
element
->
getIndex
()]
=
partition
;
}
}
elInfo
=
stack
.
traverseNext
(
elInfo
);
}
...
...
AMDiS/src/ParMetisPartitioner.h
View file @
cdb9e4ad
...
...
@@ -25,7 +25,9 @@
#include
<map>
#include
<set>
#include
"parmetis.h"
#include
<Global.h>
#include
"Global.h"
#include
"mpi.h"
namespace
AMDiS
{
class
FiniteElemSpace
;
...
...
@@ -43,53 +45,64 @@ namespace AMDiS {
class
ParMetisMesh
{
public:
ParMetisMesh
(
Mesh
*
mesh
,
MPI
::
C
omm
*
comm
);
ParMetisMesh
(
Mesh
*
mesh
,
MPI
::
Intrac
omm
*
comm
);
~
ParMetisMesh
();
inline
void
setParMetisIndex
(
int
amdisIndex
,
int
parMetisIndex
)
{
inline
void
setParMetisIndex
(
int
amdisIndex
,
int
parMetisIndex
)
{
elem_a2p
[
amdisIndex
]
=
parMetisIndex
+
1
;
}
inline
int
getParMetisIndex
(
int
amdisIndex
)
{
inline
int
getParMetisIndex
(
int
amdisIndex
)
{
int
result
=
elem_a2p
[
amdisIndex
];
TEST_EXIT
(
result
>
0
)(
"invalid index
\n
"
);
return
result
-
1
;
}
inline
void
setAMDiSIndex
(
int
parMetisIndex
,
int
amdisIndex
)
{
inline
void
setAMDiSIndex
(
int
parMetisIndex
,
int
amdisIndex
)
{
elem_p2a
[
parMetisIndex
]
=
amdisIndex
;
}
inline
int
getAMDiSIndex
(
int
parMetisIndex
)
{
inline
int
getAMDiSIndex
(
int
parMetisIndex
)
{
return
elem_p2a
[
parMetisIndex
];
}
inline
int
*
getAMDiSIndices
()
{
inline
int
*
getAMDiSIndices
()
{
return
elem_p2a
;
}
inline
int
*
getElementPtr
()
{
inline
int
*
getElementPtr
()
{
return
eptr
;
}
inline
int
*
getElementInd
()
{
inline
int
*
getElementInd
()
{
return
eind
;
}
inline
int
*
getElementDist
()
{
inline
int
*
getElementDist
()
{
return
elmdist
;
}
inline
int
getDim
()
{
inline
int
getDim
()
{
return
dim
;
}
inline
float
*
getXYZ
()
{
inline
float
*
getXYZ
()
{
return
xyz
;
}
inline
int
getNumElements
()
{
inline
int
getNumElements
()
{
return
nElements
;
}
...
...
@@ -119,7 +132,7 @@ namespace AMDiS {
int
*
elem_p2a
;
/// The MPI communicator that should be used for mesh partition.
MPI
::
C
omm
*
mpiComm
;
MPI
::
Intrac
omm
*
mpiComm
;
};
...
...
@@ -127,16 +140,18 @@ namespace AMDiS {
{
public:
ParMetisGraph
(
ParMetisMesh
*
parMetisMesh
,
MPI
::
C
omm
*
comm
,
MPI
::
Intrac
omm
*
comm
,
int
ncommonnodes
=
-
1
);
~
ParMetisGraph
();
inline
int
*
getXAdj
()
{
inline
int
*
getXAdj
()
{
return
xadj
;
}
inline
int
*
getAdjncy
()
{
inline
int
*
getAdjncy
()
{
return
adjncy
;
}
...
...
@@ -152,7 +167,7 @@ namespace AMDiS {
class
ParMetisPartitioner
{
public:
ParMetisPartitioner
(
Mesh
*
mesh
,
MPI
::
C
omm
*
comm
)
ParMetisPartitioner
(
Mesh
*
mesh
,
MPI
::
Intrac
omm
*
comm
)
:
mesh_
(
mesh
),
mpiComm
(
comm
),
parMetisMesh
(
NULL
)
...
...
@@ -187,7 +202,7 @@ namespace AMDiS {
protected:
Mesh
*
mesh_
;
MPI
::
C
omm
*
mpiComm
;
MPI
::
Intrac
omm
*
mpiComm
;
ParMetisMesh
*
parMetisMesh
;
};
...
...
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